Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Reverse (-)

3910634 .. 3913437

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGGGCTTGGCTTCCTTCCGGGCTGTTGCTTCTCTCTCTTCCCGTCCCAGAAACCCCATTTCCGCCTCCGCTTTCGACGCTCGTAGAGCAAAGTGGCTCTCTCTTCCTTCGTCGTCCTTTTCCATTGTTCGAGCTCAGCAGATGGAGTCTAAGGGCACTCCGCTGTCGCCGGTTGCGGTGGAAGGTGAAGAGGAGCCGGAGAAAGTTGAGCTGAAAATCAAGGAATGGGAGGTGGGTATGTACCACAATGAGGTGGCTGCGAGTCAGGGAATTAGAATCAGGAGGAGGCCTCCCACAGGACCCCCTCAGCACTATGTGGGACCTTTCGAGTTCCGGTTGCAGAACGAGGGCAACACTCCACGGAATATTCTGGAGGAAATCATATGGCACAAGGACACTGAAGTTGCTCAGTTGAAGCAGAGGCAACCTCTGTATTCATTGAAGAAAGATCTTGACAATGCTCCGCCGGTGAGGGATTTTGTTGGAGCTCTGAGGGCGGCGCATTCACGAACTGGTCTGCCCGGTTTGATTGCTGAAGTGAAGAAGGCTTCCCCAAGTAGAGGAGTTTTGAGGGAAAATTTTGATCCTGTTGAAATTGCACAAGCTTATGAAAAAGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGCTATGAAAATATGGTGGCGATAAGAAATGCTGGAGTTAAGTGTCCTCTGTTGTGCAAAGAATTTATCATCGAGGCTTGGCAAATCTACTATGCTCGAACCAAAGGTGCAGATGCGATTCTTTTGATTGCTGCTGTTTTGCCTGACCTTGACATCAAATACATGACAAGGATCTGCAAGATGCTTGGCATGGCAACACTTGTTGAGGTGCATGATGAGAGGGAAATGGACCGTGTTCTTGGCATTGAGGGGGTTGAGTTAATTGGCATCAACAACCGCAATCTTGAAACATTTGAGGTTGATACTAGTAACACAAAGAAGCTTCTTGAAGGAGAGCGTGGCGAATTGATCCGTCAGAGAGACATCATTGTGGTAGGAGAATCTGGACTGTTTACACCAGATGACATTGCCTATGTACAAGAAGCTGGTGTTAAAGCGGTTTTGGTAGGAGAGTCAATTGTGAAACAGAATGACCCTCAGAAGGGAATTGCTGAACTTTTTGGTAAAGACATTTCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

397

Amino Acids

43.97

Weight (kDa)

5.79

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	125 - 389	1.2e-77	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1189
AciI	CCGC	8 cut(s)	66, 72, 164, 179, 467, 500, 946, 1106
AclWI	GGATC	3 cut(s)	581, 848, 1012
AcsI	RAATTY	2 cut(s)	580, 731
AcuI	CTGAAG	2 cut(s)	423, 558
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	245, 1086
AfiI	CCNNNNNNNGG	5 cut(s)	253, 299, 563, 1150, 1151
AgsI	TTSAA	5 cut(s)	418, 445, 596, 956, 998
AhlI	ACTAGT	1 cut(s)	974
AluBI	AGCT	8 cut(s)	137, 214, 491, 608, 626, 672, 991, 1094
AluI	AGCT	8 cut(s)	137, 214, 491, 608, 626, 672, 991, 1094
Alw21I	GWGCWC	2 cut(s)	139, 493
Alw26I	GTCTC	1 cut(s)	1023
AlwI	GGATC	3 cut(s)	581, 848, 1012
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	260, 626, 800
ApoI	RAATTY	2 cut(s)	580, 731
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	3 cut(s)	302, 323, 898
AsuC2I	CCSGG	2 cut(s)	23, 525
AsuHPI	GGTGA	2 cut(s)	200, 484
AvaII	GGWCC	3 cut(s)	302, 323, 898
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	139, 493
Bbv12I	GWGCWC	2 cut(s)	139, 493
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	247, 613, 787
BccI	CCATC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	23, 525
BcoDI	GTCTC	1 cut(s)	1023
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	1 cut(s)	975
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	4 cut(s)	261, 501, 627, 801
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	262, 502, 628, 802
Bme1390I	CCNGG	2 cut(s)	23, 525
Bme18I	GGWCC	3 cut(s)	302, 323, 898
BmgT120I	GGNCC	3 cut(s)	302, 323, 898
BmiI	GGNNCC	3 cut(s)	198, 304, 324
BmrFI	CCNGG	2 cut(s)	23, 525
BmsI	GCATC	3 cut(s)	772, 840, 945
BplI	GAGNNNNNCTC	4 cut(s)	277, 309, 415, 447
BpmI	CTGGAG	2 cut(s)	395, 723
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	23, 525
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	5 cut(s)	253, 299, 563, 1150, 1151
Bse118I	RCCGGY	2 cut(s)	172, 469
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	1074
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	5 cut(s)	253, 299, 563, 1150, 1151
BseMI	GCAATG	1 cut(s)	1074
BseMII	CTCAG	5 cut(s)	152, 323, 425, 485, 1160
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	3 cut(s)	209, 301, 579
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	247, 613, 787
BsgI	GTGCAG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	139, 493
BsiSI	CCGG	6 cut(s)	22, 173, 200, 337, 470, 525
BslFI	GGGAC	2 cut(s)	33, 336
BslI	CCNNNNNNNGG	5 cut(s)	253, 299, 563, 1150, 1151
BsmAI	GTCTC	1 cut(s)	1023
BsmFI	GGGAC	2 cut(s)	33, 336
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	292
Bsp1286I	GDGCHC	3 cut(s)	139, 161, 493
Bsp1407I	TGTACA	1 cut(s)	1084
Bsp143I	GATC	4 cut(s)	451, 586, 840, 1017
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	8 cut(s)	66, 72, 164, 179, 467, 500, 946, 1106
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	5 cut(s)	151, 322, 424, 486, 1159
BspLI	GGNNCC	3 cut(s)	198, 304, 324
BspPI	GGATC	3 cut(s)	581, 848, 1012
BsrDI	GCAATG	1 cut(s)	1074
BsrFI	RCCGGY	2 cut(s)	172, 469
BsrGI	TGTACA	1 cut(s)	1084
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	2 cut(s)	172, 469
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	4 cut(s)	451, 586, 840, 1017
Bst4CI	ACNGT	2 cut(s)	902, 1059
Bst6I	CTCTTC	3 cut(s)	46, 111, 186
BstAUI	TGTACA	1 cut(s)	1084
BstDEI	CTNAG	7 cut(s)	138, 153, 309, 411, 494, 635, 1146
BstDSI	CCRYGG	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	4 cut(s)	454, 589, 843, 1020
BstMAI	GTCTC	1 cut(s)	1023
BstMBI	GATC	4 cut(s)	451, 586, 840, 1017
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 497
BstSCI	CCNGG	2 cut(s)	21, 523
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	247, 613, 787
BstX2I	RGATCY	2 cut(s)	451, 840
BstYI	RGATCY	2 cut(s)	451, 840
BsuRI	GGCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	399
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	2 cut(s)	172, 469
Cfr13I	GGNCC	3 cut(s)	302, 323, 898
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	244, 1085
CviAII	CATG	3 cut(s)	832, 859, 881
CviQI	GTAC	2 cut(s)	244, 1085
DdeI	CTNAG	7 cut(s)	138, 153, 309, 411, 494, 635, 1146
DpnI	GATC	4 cut(s)	453, 588, 842, 1019
DpnII	GATC	4 cut(s)	451, 586, 840, 1017
DraIII	CACNNNGTG	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	46, 111, 186
EarI	CTCTTC	3 cut(s)	46, 111, 186
EciI	GGCGGA	2 cut(s)	55, 456
Ecl136II	GAGCTC	2 cut(s)	137, 491
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	139, 493
Eco47I	GGWCC	3 cut(s)	302, 323, 898
Eco53kI	GAGCTC	2 cut(s)	137, 491
Eco57I	CTGAAG	2 cut(s)	423, 558
EcoICRI	GAGCTC	2 cut(s)	137, 491
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoO109I	RGGNCCY	2 cut(s)	302, 323
EcoT38I	GRGCYC	2 cut(s)	139, 493
FaeI	CATG	3 cut(s)	835, 862, 884
FaqI	GGGAC	2 cut(s)	33, 336
FatI	CATG	3 cut(s)	831, 858, 880
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	261, 501, 627, 801
FriOI	GRGCYC	2 cut(s)	139, 493
Fsp4HI	GCNGC	4 cut(s)	261, 501, 627, 801
FspBI	CTAG	1 cut(s)	975
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	4 cut(s)	261, 501, 627, 801
GsuI	CTGGAG	2 cut(s)	395, 723
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	6 cut(s)	22, 173, 200, 337, 470, 525
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	3 cut(s)	835, 862, 884
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HindIII	AAGCTT	2 cut(s)	606, 989
HinfI	GANTC	6 cut(s)	149, 265, 279, 787, 1049, 1121
HpaII	CCGG	6 cut(s)	22, 173, 200, 337, 470, 525
HphI	GGTGA	2 cut(s)	200, 484
Hpy166II	GTNNAC	1 cut(s)	1062
Hpy188I	TCNGA	3 cut(s)	495, 1026, 1149
Hpy188III	TCNNGA	7 cut(s)	283, 374, 455, 510, 953, 995, 1053
Hpy8I	GTNNAC	1 cut(s)	1062
Hpy99I	CGWCG	2 cut(s)	83, 118
HpyAV	CCTTC	6 cut(s)	28, 120, 179, 541, 992, 1144
HpyCH4III	ACNGT	2 cut(s)	902, 1059
HpyCH4V	TGCA	6 cut(s)	343, 602, 726, 779, 846, 880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 497
HpyF3I	CTNAG	7 cut(s)	138, 153, 309, 411, 494, 635, 1146
Hsp92II	CATG	3 cut(s)	835, 862, 884
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	4 cut(s)	451, 586, 840, 1017
LmnI	GCTCC	4 cut(s)	196, 469, 488, 623
Lsp1109I	GCAGC	3 cut(s)	247, 613, 787
LweI	GCATC	3 cut(s)	772, 840, 945
MaeI	CTAG	1 cut(s)	975
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	4 cut(s)	453, 588, 842, 1019
MboI	GATC	4 cut(s)	451, 586, 840, 1017
MboII	GAAGA	5 cut(s)	33, 98, 203, 457, 556
MfeI	CAATTG	1 cut(s)	1125
MflI	RGATCY	2 cut(s)	451, 840
MhlI	GDGCHC	3 cut(s)	139, 161, 493
MluCI	AATT	8 cut(s)	273, 580, 597, 731, 930, 1013, 1125, 1155
MlyI	GAGTC	3 cut(s)	158, 274, 1130
MmeI	TCCRAC	1 cut(s)	466
MseI	TTAA	3 cut(s)	708, 929, 1101
MslI	CAYNNNNRTG	1 cut(s)	1037
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	6 cut(s)	22, 173, 200, 337, 470, 525
MspR9I	CCNGG	2 cut(s)	23, 525
MunI	CAATTG	1 cut(s)	1125
Mva1269I	GAATGC	1 cut(s)	505
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 497
NciI	CCSGG	2 cut(s)	23, 525
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	4 cut(s)	451, 586, 840, 1017
NlaIII	CATG	3 cut(s)	835, 862, 884
NlaIV	GGNNCC	3 cut(s)	198, 304, 324
PceI	AGGCCT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	279, 787, 1049
PkrI	GCNGC	4 cut(s)	262, 502, 628, 802
PleI	GAGTC	3 cut(s)	157, 273, 1129
PpsI	GAGTC	3 cut(s)	157, 273, 1129
PpuMI	RGGWCCY	2 cut(s)	302, 323
PsiI	TTATAA	1 cut(s)	1189
Psp124BI	GAGCTC	2 cut(s)	139, 493
Psp5II	RGGWCCY	2 cut(s)	302, 323
PspN4I	GGNNCC	3 cut(s)	198, 304, 324
PspPI	GGNCC	3 cut(s)	302, 323, 898
PspPPI	RGGWCCY	2 cut(s)	302, 323
PsuI	RGATCY	2 cut(s)	451, 840
RsaI	GTAC	2 cut(s)	245, 1086
RsaNI	GTAC	2 cut(s)	244, 1085
RseI	CAYNNNNRTG	1 cut(s)	1037
SacI	GAGCTC	2 cut(s)	139, 493
SaqAI	TTAA	3 cut(s)	708, 929, 1101
SatI	GCNGC	4 cut(s)	261, 501, 627, 801
Sau3AI	GATC	4 cut(s)	451, 586, 840, 1017
Sau96I	GGNCC	3 cut(s)	302, 323, 898
SchI	GAGTC	3 cut(s)	158, 274, 1130
ScrFI	CCNGG	2 cut(s)	23, 525
SduI	GDGCHC	3 cut(s)	139, 161, 493
SfaNI	GCATC	3 cut(s)	772, 840, 945
SgrAI	CRCCGGYG	1 cut(s)	469
SinI	GGWCC	3 cut(s)	302, 323, 898
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	8 cut(s)	273, 580, 597, 731, 930, 1013, 1125, 1155
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	8 cut(s)	66, 72, 164, 179, 467, 500, 946, 1106
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	975
SstI	GAGCTC	2 cut(s)	139, 493
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	21, 523
TaaI	ACNGT	2 cut(s)	902, 1059
TaqI	TCGA	5 cut(s)	78, 133, 330, 741, 766
TasI	AATT	8 cut(s)	273, 580, 597, 731, 930, 1013, 1125, 1155
TatI	WGTACW	1 cut(s)	1084
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	3 cut(s)	279, 787, 1049
Tru1I	TTAA	3 cut(s)	708, 929, 1101
Tru9I	TTAA	3 cut(s)	708, 929, 1101
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	3 cut(s)	260, 626, 800
TspDTI	ATGAA	4 cut(s)	429, 627, 666, 690
TspGWI	ACGGA	2 cut(s)	379, 1010
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	302, 323, 898
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	2 cut(s)	580, 731
XspI	CTAG	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.