pycom09g07470

Salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0015020
Physical Location & Seq
Forward (+)
5662255 .. 5664847
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGAAGATACTGTGCAATGCGTGCGAGGTGGCGGAGGCCAAGGTGCTGTGCTGCGCGGACGAGGCGGCGTTGTGCTGGGCGTGCGACCAGAAGATCCACGCCGCCAACAAACTGGCCAGCAAGCACCAGAGAGTCCCTCTCTCTTCCTCTTCCTCTCCCATGCCCAAGTGCGATATTTGCCAGGAGATGGTCGGATACTTCTTCTGTCTGCAGGATCGAGCTTTACTCTGTCGGAAATGCGATGTTGCCATACACACAGTAAACTCGTATGTTTCCAGTCACCAAAGGTTTGTGCTTACTGGTGTGAAAGTGGGGCTTGAAGCTACCAAACCATGCATCTCCACCTCCACCAAGGAAATGTTGACTTCTGTGGAAACGGTTTCTGAATCAGCATCGTCGCGACCAATAAAGAAAAGTCCAGTAGGTCCGTTTGTTGGGGAGATTAAACAAGCATTGCCTGGTAAAGTTGACAGTGTTGGAACTGGTGTATCAGGAAAATTACCGTTAATTCAAAATGCTAACACCTCCGGTTCCGGGTCGAACTTGGAAGAATTTCTTGGTTTTACTGACCCTAATCAAAATTTTGGGGTCTTGGACCGCATGTCGCCCAAGGTTTACGGCAGATACTGCCTCTGA

Protein Analysis

212

Amino Acids

22.7

Weight (kDa)

8.39

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 53 - 95 5.9e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78600 AT1G78600
fragaria_vesca FvH4_6g37790
malus_domestica MD09G1155900.v1.1
prunus_persica Prupe.8G109100_v2.0.a1
pyrus_communis pycom09g07470
rosa_chinensis RchiOBHm_Chr2g0150861
rosa_laevigata RLG00000020514
rosa_multiflora Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa Rorug02G0423000
rosa_samantha Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana Rw2G039610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 2 cut(s) 56, 400
AciI CCGC 5 cut(s) 32, 56, 65, 102, 598
AclWI GGATC 2 cut(s) 88, 222
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 551, 580
AfiI CCNNNNNNNGG 3 cut(s) 187, 434, 534
AgsI TTSAA 2 cut(s) 320, 512
AhdI GACNNNNNGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 180, 457
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 2 cut(s) 221, 323
AluI AGCT 2 cut(s) 221, 323
AlwI GGATC 2 cut(s) 88, 222
AlwNI CAGNNNCTG 1 cut(s) 627
AoxI GGCC 2 cut(s) 36, 114
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 2 cut(s) 551, 580
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 425, 595
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 2 cut(s) 425, 595
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BalI TGGCCA 1 cut(s) 116
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 634
BciT130I CCWGG 2 cut(s) 182, 459
BciVI GTATCC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 3 cut(s) 52, 66, 102
BlsI GCNGC 3 cut(s) 53, 67, 103
Bme1390I CCNGG 3 cut(s) 182, 459, 535
Bme18I GGWCC 2 cut(s) 425, 595
BmeRI GACNNNNNGTC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 425, 595
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 3 cut(s) 182, 459, 535
BmsI GCATC 2 cut(s) 345, 401
BplI GAGNNNNNCTC 6 cut(s) 121, 153, 123, 155, 210, 242
BpuMI CCSGG 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 39, 351, 609
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 434, 534
Bse1I ACTGG 5 cut(s) 117, 276, 304, 419, 487
Bse3DI GCAATG 2 cut(s) 22, 452
BseBI CCWGG 2 cut(s) 182, 459
BseDI CCNNGG 3 cut(s) 39, 351, 609
BseLI CCNNNNNNNGG 3 cut(s) 187, 434, 534
BseMI GCAATG 2 cut(s) 22, 452
BseNI ACTGG 5 cut(s) 117, 276, 304, 419, 487
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 2 cut(s) 56, 400
BshFI GGCC 2 cut(s) 38, 116
BsiSI CCGG 2 cut(s) 528, 534
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 187, 434, 534
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 38, 116
Bsp143I GATC 2 cut(s) 93, 214
Bsp68I TCGCGA 1 cut(s) 400
BspACI CCGC 5 cut(s) 32, 56, 65, 102, 598
BspANI GGCC 2 cut(s) 38, 116
BspFNI CGCG 2 cut(s) 56, 400
BspLI GGNNCC 1 cut(s) 532
BspMAI CTGCAG 1 cut(s) 213
BspPI GGATC 2 cut(s) 88, 222
BsrDI GCAATG 2 cut(s) 22, 452
BsrI ACTGG 5 cut(s) 117, 276, 304, 419, 487
BssECI CCNNGG 3 cut(s) 39, 351, 609
BssMI GATC 2 cut(s) 93, 214
BssT1I CCWWGG 3 cut(s) 39, 351, 609
Bst2UI CCWGG 2 cut(s) 182, 459
Bst4CI ACNGT 5 cut(s) 12, 259, 379, 473, 504
Bst6I CTCTTC 2 cut(s) 148, 154
BstAPI GCANNNNNTGC 2 cut(s) 21, 627
BstC8I GCNNGC 4 cut(s) 22, 82, 118, 122
BstFNI CGCG 2 cut(s) 56, 400
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 96, 217
BstMBI GATC 2 cut(s) 93, 214
BstMWI GCNNNNNNNGC 5 cut(s) 21, 62, 81, 177, 627
BstNI CCWGG 2 cut(s) 182, 459
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 180, 457, 533
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 2 cut(s) 56, 400
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 38, 116
BtgZI GCGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 478
BtuMI TCGCGA 1 cut(s) 400
Cac8I GCNNGC 4 cut(s) 22, 82, 118, 122
CaiI CAGNNNCTG 1 cut(s) 627
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 425, 595
CviAII CATG 3 cut(s) 160, 333, 601
CviJI RGCY 5 cut(s) 38, 116, 221, 316, 323
CviKI_1 RGCY 5 cut(s) 38, 116, 221, 316, 323
DpnI GATC 2 cut(s) 95, 216
DpnII GATC 2 cut(s) 93, 214
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 148, 154
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 2 cut(s) 148, 154
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 3 cut(s) 39, 351, 609
Eco47I GGWCC 2 cut(s) 425, 595
EcoRII CCWGG 2 cut(s) 180, 457
EcoT14I CCWWGG 3 cut(s) 39, 351, 609
EcoT22I ATGCAT 1 cut(s) 338
ErhI CCWWGG 3 cut(s) 39, 351, 609
FaeI CATG 3 cut(s) 163, 336, 604
FaiI YATR 5 cut(s) 161, 251, 270, 334, 602
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 540, 572
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 159, 332, 600
Fnu4HI GCNGC 3 cut(s) 52, 66, 102
Fsp4HI GCNGC 3 cut(s) 52, 66, 102
GlaI GCGC 1 cut(s) 55
GluI GCNGC 3 cut(s) 52, 66, 102
GsaI CCCAGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 38, 116
HapII CCGG 2 cut(s) 528, 534
HhaI GCGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 163, 336, 604
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 363, 469
HindII GTYRAC 2 cut(s) 363, 469
HinfI GANTC 2 cut(s) 132, 386
HpaII CCGG 2 cut(s) 528, 534
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 4 cut(s) 262, 363, 469, 616
Hpy188I TCNGA 4 cut(s) 194, 234, 385, 635
Hpy188III TCNNGA 2 cut(s) 399, 492
Hpy8I GTNNAC 4 cut(s) 262, 363, 469, 616
Hpy99I CGWCG 1 cut(s) 400
HpyCH4III ACNGT 5 cut(s) 12, 259, 379, 473, 504
HpyCH4V TGCA 3 cut(s) 15, 211, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 62, 81, 177, 627
Hsp92II CATG 3 cut(s) 163, 336, 604
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 93, 214
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 345, 401
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 95, 216
MboI GATC 2 cut(s) 93, 214
MboII GAAGA 6 cut(s) 16, 103, 135, 141, 193, 560
MflI RGATCY 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 4 cut(s) 497, 507, 551, 580
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 3 cut(s) 172, 212, 457
MnlI CCTC 8 cut(s) 19, 28, 55, 147, 157, 163, 355, 535
Mox20I TGGCCA 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 444, 506
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 2 cut(s) 528, 534
MspR9I CCNGG 3 cut(s) 182, 459, 535
MvaI CCWGG 2 cut(s) 182, 459
MvnI CGCG 2 cut(s) 56, 400
MwoI GCNNNNNNNGC 5 cut(s) 21, 62, 81, 177, 627
NciI CCSGG 1 cut(s) 535
NdeII GATC 2 cut(s) 93, 214
NlaIII CATG 3 cut(s) 163, 336, 604
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 278
NruI TCGCGA 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 3 cut(s) 53, 67, 103
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 180, 457
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 180, 457
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 2 cut(s) 425, 595
PstI CTGCAG 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 93
RruI TCGCGA 1 cut(s) 400
SaqAI TTAA 2 cut(s) 444, 506
SatI GCNGC 3 cut(s) 52, 66, 102
Sau3AI GATC 2 cut(s) 93, 214
Sau96I GGNCC 2 cut(s) 425, 595
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 3 cut(s) 182, 459, 535
SetI ASST 9 cut(s) 30, 45, 223, 290, 325, 347, 427, 527, 615
SfaNI GCATC 2 cut(s) 345, 401
SfcI CTRYAG 1 cut(s) 209
SinI GGWCC 2 cut(s) 425, 595
Sse9I AATT 4 cut(s) 497, 507, 551, 580
SsiI CCGC 5 cut(s) 32, 56, 65, 102, 598
StyD4I CCNGG 3 cut(s) 180, 457, 533
StyI CCWWGG 3 cut(s) 39, 351, 609
TaaI ACNGT 5 cut(s) 12, 259, 379, 473, 504
TaqI TCGA 2 cut(s) 217, 539
TasI AATT 4 cut(s) 497, 507, 551, 580
TauI GCSGC 2 cut(s) 68, 104
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 444, 506
Tru9I TTAA 2 cut(s) 444, 506
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 478
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 425, 595
XapI RAATTY 2 cut(s) 551, 580
XceI RCATGY 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 552
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.