Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012863

Physical Location & Seq

Genomic Coordinates Forward (+)

5828181 .. 5829582

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCCTCTCACCCCTACTACATCAAAGGTGTTCAACGATAAAACATTCGCAATGATGAAGAAGGGAGTCCGAATCATTAATGTTGCCCGAGGCGGAGTCATTGATGAAGATGCACTAGTGAGAGCTCTTGACAGTGGAATTGTTGCTCAGGCTGCACTTGATGTGTTCGAAGAGGAGCCTCCATCCAAAGATAGTAAGCTCGTGCAACATGAGAATGTAACAGTCACACCTCATCTAGGAGCTAGCACAAAGGAAGCTCAGGAAGGTGTTGCCATTGAAATAGCAGAAGCTGTTGTTGGAGCATTGAGAGGTGAACTTTCTGCAACCGCTGTCAACGCTCCCATGGTCTCTCCTGAGGTTCTGGCTGAGTTGTCTCCATATGTTGTGCTAGCCGAGAAGCTGGGAAAGTTGGCTGTACAATTAGTAGCAGGAGGAAGTGGGATTAAATCTGTGAGGGTGGTTTACCAATCAGCTCGCCACCCCGATGACTTGGATACCAGACTTCTCAGGGCCATGATCACCAAAGGCATCATCGAACCGATATCTGCCTCATTTATCAATCTAGTCAATGCAGATTTCATTGCGAAGGATAAAGGTCTGCACATAAGCGAGGAAAGGGTAGCTGTCGACGCATCTCCAGAGTGCCCTATCGCTTCAATCCAAGTACACATTTCCAAAGTGGAGTCCAAATTCGCAAGTTGTGTTTCCGAAAATGGAAACATAAGCATTGAGGGGAAAGTGAAATATGGCAAGCCCCATCTGACATTGTTAGGAACGTTTGGTGTGGATGTGAGCCTCGAGGGAAATCTCATTCTGTGCCGGCAGGTGGATCATCCAGGCATGATTGGACAGGTGGGGAACATACTTGGGACCGAGAATGTGAATGTGAACTTTATGAGTGTGGGAAGAACTGTCCAGAAGAAGGCCATAATGGCGATTGGAGTGGATGAGGAACCGAAAGAGGAGTTGCTCAATAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

328

Amino Acids

34.79

Weight (kDa)

5.49

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17745 AT1G17745
fragaria_vesca	FvH4_6g37460
malus_domestica	MD09G1157900.v1.1 MD17G1143900.v1.1
prunus_persica	Prupe.3G168100_v2.0.a1
pyrus_communis	pycom09g07670 pycom17g13710
rosa_chinensis	RchiOBHm_Chr2g0150301
rosa_laevigata	RLG00000020484
rosa_multiflora	Rmu_sc0002335.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097310
rosa_rugosa	Rorug02G0420400
rosa_samantha	Rh2AG479300 Rh2BG491600 Rh2CG465500 Rh2DG500400
rosa_wichuraiana	Rw2G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	814
AbsI	CCTCGAGG	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	2 cut(s)	93, 327
AclI	AACGTT	1 cut(s)	776
AclWI	GGATC	1 cut(s)	837
AcsI	RAATTY	1 cut(s)	689
AfaI	GTAC	2 cut(s)	417, 666
AfiI	CCNNNNNNNGG	3 cut(s)	236, 826, 922
AgsI	TTSAA	3 cut(s)	34, 278, 657
AhlI	ACTAGT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	8 cut(s)	125, 199, 242, 257, 290, 400, 473, 623
AluI	AGCT	8 cut(s)	125, 199, 242, 257, 290, 400, 473, 623
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	352, 378
AlwI	GGATC	1 cut(s)	837
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	2 cut(s)	87, 797
AoxI	GGCC	2 cut(s)	510, 924
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	689
AseI	ATTAAT	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	510, 870
AsuHPI	GGTGA	2 cut(s)	323, 511
AsuII	TTCGAA	1 cut(s)	168
AsuNHI	GCTAGC	2 cut(s)	242, 388
AvaI	CYCGRG	2 cut(s)	87, 797
AvaII	GGWCC	1 cut(s)	870
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	190, 765
BciT130I	CCWGG	1 cut(s)	837
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	352, 378
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	5 cut(s)	116, 236, 243, 389, 563
BfuAI	ACCTGC	1 cut(s)	814
BfuI	GTATCC	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	932
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	1 cut(s)	870
BmeT110I	CYCGRG	2 cut(s)	87, 797
BmgT120I	GGNCC	2 cut(s)	510, 870
BmiI	GGNNCC	3 cut(s)	177, 871, 954
BmrFI	CCNGG	1 cut(s)	837
BmsI	GCATC	3 cut(s)	100, 537, 641
BmtI	GCTAGC	2 cut(s)	246, 392
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	2 cut(s)	147, 258
Bpu14I	TTCGAA	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	88, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 826, 922
Bse118I	RCCGGY	1 cut(s)	819
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	57, 579
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	88, 342
BseGI	GGATG	4 cut(s)	182, 793, 832, 952
BseLI	CCNNNNNNNGG	3 cut(s)	236, 826, 922
BseMI	GCAATG	2 cut(s)	57, 579
BseMII	CTCAG	5 cut(s)	161, 272, 345, 357, 520
BseRI	GAGGAG	2 cut(s)	188, 977
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	400
BsgI	GTGCAG	2 cut(s)	138, 584
BshFI	GGCC	2 cut(s)	512, 926
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	2 cut(s)	87, 797
BsiSI	CCGG	1 cut(s)	820
BslFI	GGGAC	1 cut(s)	883
BslI	CCNNNNNNNGG	3 cut(s)	236, 826, 922
BsmAI	GTCTC	2 cut(s)	352, 378
BsmFI	GGGAC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	512, 926
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	87, 797
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	127, 647
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	516, 829
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	93, 327
BspANI	GGCC	2 cut(s)	512, 926
BspCNI	CTCAG	5 cut(s)	160, 271, 346, 358, 519
BspLI	GGNNCC	3 cut(s)	177, 871, 954
BspMI	ACCTGC	1 cut(s)	814
BspOI	GCTAGC	2 cut(s)	246, 392
BspPI	GGATC	1 cut(s)	837
BspT104I	TTCGAA	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	57, 579
BsrFI	RCCGGY	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	819
BssECI	CCNNGG	2 cut(s)	88, 342
BssMI	GATC	2 cut(s)	516, 829
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	134, 223, 913
Bst6I	CTCTTC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	5 cut(s)	244, 390, 475, 752, 821
BstDEI	CTNAG	5 cut(s)	147, 258, 354, 366, 506
BstDSI	CCRYGG	1 cut(s)	342
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	4 cut(s)	182, 793, 832, 952
BstKTI	GATC	2 cut(s)	519, 832
BstMAI	GTCTC	2 cut(s)	352, 378
BstMBI	GATC	2 cut(s)	516, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 335, 629, 932
BstNI	CCWGG	1 cut(s)	837
BstSCI	CCNGG	1 cut(s)	835
BstSLI	GKGCMC	1 cut(s)	647
BstV1I	GCAGC	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	512, 926
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	4 cut(s)	182, 793, 832, 952
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	5 cut(s)	244, 390, 475, 752, 821
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	819
Cfr13I	GGNCC	2 cut(s)	510, 870
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	2 cut(s)	416, 665
CviAII	CATG	4 cut(s)	209, 343, 514, 841
CviQI	GTAC	2 cut(s)	416, 665
DdeI	CTNAG	5 cut(s)	147, 258, 354, 366, 506
DpnI	GATC	2 cut(s)	518, 831
DpnII	GATC	2 cut(s)	516, 829
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	870
Eco53kI	GAGCTC	1 cut(s)	125
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	87, 797
EcoICRI	GAGCTC	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	835
EcoRV	GATATC	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	4 cut(s)	212, 346, 517, 844
FaqI	GGGAC	1 cut(s)	883
FatI	CATG	4 cut(s)	208, 342, 513, 840
FauNDI	CATATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	4 cut(s)	169, 800, 819, 959
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	5 cut(s)	116, 236, 243, 389, 563
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	512, 926
HapII	CCGG	1 cut(s)	820
HgaI	GACGC	1 cut(s)	638
Hin1II	CATG	4 cut(s)	212, 346, 517, 844
HincII	GTYRAC	2 cut(s)	334, 628
HindII	GTYRAC	2 cut(s)	334, 628
HinfI	GANTC	4 cut(s)	66, 72, 96, 683
HpaII	CCGG	1 cut(s)	820
HphI	GGTGA	2 cut(s)	323, 511
Hpy166II	GTNNAC	6 cut(s)	314, 334, 463, 628, 667, 889
Hpy188I	TCNGA	3 cut(s)	71, 709, 762
Hpy188III	TCNNGA	5 cut(s)	128, 260, 353, 638, 916
Hpy8I	GTNNAC	6 cut(s)	314, 334, 463, 628, 667, 889
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	4 cut(s)	55, 257, 580, 916
HpyCH4III	ACNGT	3 cut(s)	134, 223, 913
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	6 cut(s)	113, 155, 205, 323, 572, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 335, 629, 932
HpyF3I	CTNAG	5 cut(s)	147, 258, 354, 366, 506
HpySE526I	ACGT	1 cut(s)	776
Hsp92II	CATG	4 cut(s)	212, 346, 517, 844
KroI	GCCGGC	1 cut(s)	819
KroNI	GCCGGC	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	516, 829
LmnI	GCTCC	4 cut(s)	175, 239, 299, 343
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	100, 537, 641
MaeI	CTAG	5 cut(s)	116, 236, 243, 389, 563
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	2 cut(s)	217, 223
MalI	GATC	2 cut(s)	518, 831
MboI	GATC	2 cut(s)	516, 829
MboII	GAAGA	5 cut(s)	70, 119, 182, 918, 931
MhlI	GDGCHC	2 cut(s)	127, 647
MluCI	AATT	3 cut(s)	138, 419, 689
MlyI	GAGTC	3 cut(s)	75, 105, 692
MmeI	TCCRAC	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	819
MseI	TTAA	2 cut(s)	78, 444
MslI	CAYNNNNRTG	2 cut(s)	213, 483
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	820
MspR9I	CCNGG	1 cut(s)	837
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	152, 335, 629, 932
NaeI	GCCGGC	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	516, 829
NgoMIV	GCCGGC	1 cut(s)	819
NheI	GCTAGC	2 cut(s)	242, 388
NlaIII	CATG	4 cut(s)	212, 346, 517, 844
NlaIV	GGNNCC	3 cut(s)	177, 871, 954
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	797
PaqCI	CACCTGC	1 cut(s)	814
PdiI	GCCGGC	1 cut(s)	821
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	3 cut(s)	74, 104, 691
PpsI	GAGTC	3 cut(s)	74, 104, 691
PshBI	ATTAAT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	776
Psp6I	CCWGG	1 cut(s)	835
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	3 cut(s)	177, 871, 954
PspPI	GGNCC	2 cut(s)	510, 870
PspXI	VCTCGAGB	1 cut(s)	797
PstNI	CAGNNNCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	417, 666
RsaNI	GTAC	2 cut(s)	416, 665
RseI	CAYNNNNRTG	2 cut(s)	213, 483
SacI	GAGCTC	1 cut(s)	127
SalI	GTCGAC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	78, 444
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	516, 829
Sau96I	GGNCC	2 cut(s)	510, 870
SchI	GAGTC	3 cut(s)	75, 105, 692
ScrFI	CCNGG	1 cut(s)	837
SduI	GDGCHC	2 cut(s)	127, 647
SfaNI	GCATC	3 cut(s)	100, 537, 641
Sfr274I	CTCGAG	1 cut(s)	797
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	870
SlaI	CTCGAG	1 cut(s)	797
SmiMI	CAYNNNNRTG	2 cut(s)	213, 483
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
SpeI	ACTAGT	1 cut(s)	115
Sse9I	AATT	3 cut(s)	138, 419, 689
SsiI	CCGC	2 cut(s)	93, 327
SspMI	CTAG	5 cut(s)	116, 236, 243, 389, 563
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	835
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	134, 223, 913
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	4 cut(s)	168, 534, 627, 798
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	3 cut(s)	138, 419, 689
TatI	WGTACW	2 cut(s)	415, 664
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	78, 444
Tru9I	TTAA	2 cut(s)	78, 444
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	71, 120, 568
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	870
VspI	ATTAAT	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	689
XhoI	CTCGAG	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	5 cut(s)	116, 236, 243, 389, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.