Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012863

Physical Location & Seq

Genomic Coordinates Forward (+)

54013732 .. 54021541

Gene Structure 7810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0420400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTGCTTCTTCCGATTGTGTGGATTTGGCCTATCACTGCCAATCTGCCATTCATATTTTCCAGTGTTGGCGGGCTGTACTCAGTTTGACTGGCAACTTTTAACTTATATGTCAGTTATTCAACAAATAACGGAGTTGAAAGTTGCTCAGGCCTTAGAGACCCCCTCATCTGTTACCAGCATCAAATCACTAGCCGAGTCCTCTGCTCTAAACTCTGTCCCTTCTGCCTATGCCTTCAACATAAACCCCAATGAAGAAGCAGATCCAAACGATCCCGAATTCGCAATTCCAATCATCGATATGTCACTCCTCACATCTGGTACTCCTGAACAACGCTCCCAAATCATCCATGACCTCGTCAAAATTTGTCAAGAATGGGGCTTCTTCATAGCAATTAACCACGGAGTGCCAGAGAGCCTAATGAAGGCCATGATTGACGCCTGTCACGGCTTCTTCAGTCTTCCAGACGAGGAGAAAAAGGAATTCAAATCAGGGAATGATGTGCTAGAAATGTTCAAGTATGGTACCAGCTATAACCTTGCCTTGGATAAGGTCCTTCTCTGGAGGGACTTCTTCAAGGTCAGAACACATCCTGAGTTTTACTCCCTCTACAAACCGGCCACCTTCAGTGAGGTTTCAATGGAGTTTGGCAAAAGAACAAGAGAAGTGGCACTAGAAATCATAAAAGCAATATCTGAAAGCCTGGGATTGGAGCCGAATTACATATTCGAAACGATGAACATGGACCGTGGCTTACAATTGCTGGCCGGGAACTACTATCCTCCTTGCCCTCAGCCGGAACATGCCATTGGTATACCACATCACACCGATCACGGTCTAGTCACACTCCTCATCCAGAATGAGATGAACGGTCTCCAAGTCGAACACAACGGAAAATGGCTCACCGTTAACGGCCCTGCCAATGGGTTTTTTGTTAACCTTGCTGATCAAATGCAGGTACTAATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

323

Amino Acids

36.34

Weight (kDa)

4.98

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	96 - 200	5e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	253 - 321	7.4e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17745 AT1G17745
fragaria_vesca	FvH4_6g37460
malus_domestica	MD09G1157900.v1.1 MD17G1143900.v1.1
prunus_persica	Prupe.3G168100_v2.0.a1
pyrus_communis	pycom09g07670 pycom17g13710
rosa_chinensis	RchiOBHm_Chr2g0150301
rosa_laevigata	RLG00000020484
rosa_multiflora	Rmu_sc0002335.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097310
rosa_rugosa	Rorug02G0420400
rosa_samantha	Rh2AG479300 Rh2BG491600 Rh2CG465500 Rh2DG500400
rosa_wichuraiana	Rw2G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	946
Acc65I	GGTACC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	814
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	257, 266
AcoI	YGGCCR	2 cut(s)	618, 765
AcsI	RAATTY	3 cut(s)	278, 363, 482
AcuI	CTGAAG	2 cut(s)	439, 610
AcyI	GRCGYC	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	406
AfaI	GTAC	4 cut(s)	79, 322, 526, 960
AfiI	CCNNNNNNNGG	5 cut(s)	424, 544, 709, 796, 923
AgsI	TTSAA	7 cut(s)	122, 139, 238, 487, 517, 577, 639
AjnI	CCWGG	1 cut(s)	702
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 792, 824
AluBI	AGCT	1 cut(s)	531
AluI	AGCT	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	152, 878
AlwI	GGATC	2 cut(s)	257, 266
AoxI	GGCC	6 cut(s)	28, 150, 426, 618, 765, 913
ApoI	RAATTY	3 cut(s)	278, 363, 482
AseI	ATTAAT	1 cut(s)	966
Asp718I	GGTACC	1 cut(s)	524
AspS9I	GGNCC	3 cut(s)	553, 745, 914
AsuC2I	CCSGG	1 cut(s)	769
AsuHPI	GGTGA	1 cut(s)	895
AsuII	TTCGAA	1 cut(s)	729
AvaII	GGWCC	2 cut(s)	553, 745
BanI	GGYRCC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	792
BceAI	ACGGC	2 cut(s)	463, 928
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	704
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	152, 878
BfaI	CTAG	4 cut(s)	191, 506, 674, 839
BfuAI	ACCTGC	1 cut(s)	946
Bme1390I	CCNGG	2 cut(s)	704, 769
Bme18I	GGWCC	2 cut(s)	553, 745
BmgT120I	GGNCC	3 cut(s)	553, 745, 914
BmiI	GGNNCC	2 cut(s)	526, 714
BmrFI	CCNGG	2 cut(s)	704, 769
BmsI	GCATC	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	4 cut(s)	149, 181, 587, 619
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	147, 792
Bpu14I	TTCGAA	1 cut(s)	729
BpuMI	CCSGG	1 cut(s)	769
Bsa29I	ATCGAT	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	152, 878
BsaJI	CCNNGG	4 cut(s)	400, 543, 703, 748
Bsc4I	CCNNNNNNNGG	5 cut(s)	424, 544, 709, 796, 923
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	2 cut(s)	62, 95
BseBI	CCWGG	1 cut(s)	704
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	4 cut(s)	400, 543, 703, 748
BseGI	GGATG	3 cut(s)	345, 589, 852
BseLI	CCNNNNNNNGG	5 cut(s)	424, 544, 709, 796, 923
BseMII	CTCAG	4 cut(s)	95, 161, 585, 806
BseNI	ACTGG	2 cut(s)	62, 95
BseRI	GAGGAG	3 cut(s)	299, 485, 839
BshFI	GGCC	6 cut(s)	30, 152, 428, 620, 767, 915
BshNI	GGYRCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	617, 768, 797
BslFI	GGGAC	2 cut(s)	203, 581
BslI	CCNNNNNNNGG	5 cut(s)	424, 544, 709, 796, 923
BsmAI	GTCTC	2 cut(s)	152, 878
BsmFI	GGGAC	2 cut(s)	203, 581
BsnI	GGCC	6 cut(s)	30, 152, 428, 620, 767, 915
Bso31I	GGTCTC	2 cut(s)	152, 878
Bsp119I	TTCGAA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	262, 271, 829, 946
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	6 cut(s)	30, 152, 428, 620, 767, 915
BspCNI	CTCAG	4 cut(s)	94, 160, 586, 805
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	526, 714
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	2 cut(s)	257, 266
BspT104I	TTCGAA	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	152, 878
BsrFI	RCCGGY	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	62, 95
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	4 cut(s)	400, 543, 703, 748
BssMI	GATC	4 cut(s)	262, 271, 829, 946
BssNAI	GTATAC	1 cut(s)	815
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	543
Bst1107I	GTATAC	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	4 cut(s)	749, 836, 872, 907
BstACI	GRCGYC	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	2 cut(s)	73, 765
BstDEI	CTNAG	5 cut(s)	81, 147, 154, 594, 792
BstDSI	CCRYGG	2 cut(s)	400, 748
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	345, 589, 852
BstKTI	GATC	4 cut(s)	265, 274, 832, 949
BstMAI	GTCTC	2 cut(s)	152, 878
BstMBI	GATC	4 cut(s)	262, 271, 829, 946
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	806
BstPAI	GACNNNNGTC	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	702, 767
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BstZ17I	GTATAC	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	6 cut(s)	30, 152, 428, 620, 767, 915
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	2 cut(s)	400, 748
BtsCI	GGATG	3 cut(s)	345, 589, 852
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	3 cut(s)	35, 69, 634
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	73, 765
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	3 cut(s)	553, 745, 914
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	4 cut(s)	78, 321, 525, 959
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	4 cut(s)	350, 430, 742, 803
CviQI	GTAC	4 cut(s)	78, 321, 525, 959
DdeI	CTNAG	5 cut(s)	81, 147, 154, 594, 792
DpnI	GATC	4 cut(s)	264, 273, 831, 948
DpnII	GATC	4 cut(s)	262, 271, 829, 946
DraIII	CACNNNGTG	1 cut(s)	406
EaeI	YGGCCR	2 cut(s)	618, 765
Eco130I	CCWWGG	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	152
Eco31I	GGTCTC	2 cut(s)	152, 878
Eco47I	GGWCC	2 cut(s)	553, 745
Eco57I	CTGAAG	2 cut(s)	439, 610
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRI	GAATTC	2 cut(s)	278, 482
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	4 cut(s)	353, 433, 745, 806
FaqI	GGGAC	2 cut(s)	203, 581
FatI	CATG	4 cut(s)	349, 429, 741, 802
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	814
FokI	GGATG	3 cut(s)	332, 576, 839
FspBI	CTAG	4 cut(s)	191, 506, 674, 839
GsuI	CTGGAG	1 cut(s)	583
HaeIII	GGCC	6 cut(s)	30, 152, 428, 620, 767, 915
HapII	CCGG	3 cut(s)	617, 768, 797
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	353, 433, 745, 806
HincII	GTYRAC	2 cut(s)	910, 937
HindII	GTYRAC	2 cut(s)	910, 937
HinfI	GANTC	1 cut(s)	197
HpaI	GTTAAC	2 cut(s)	910, 937
HpaII	CCGG	3 cut(s)	617, 768, 797
HphI	GGTGA	1 cut(s)	895
Hpy166II	GTNNAC	3 cut(s)	815, 910, 937
Hpy188I	TCNGA	3 cut(s)	14, 584, 697
Hpy188III	TCNNGA	7 cut(s)	275, 326, 371, 464, 562, 593, 856
Hpy8I	GTNNAC	3 cut(s)	815, 910, 937
HpyAV	CCTTC	5 cut(s)	231, 244, 418, 566, 634
HpyCH4III	ACNGT	4 cut(s)	749, 836, 872, 907
HpyCH4V	TGCA	1 cut(s)	955
HpyF3I	CTNAG	5 cut(s)	81, 147, 154, 594, 792
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	353, 433, 745, 806
KpnI	GGTACC	1 cut(s)	528
Ksp22I	TGATCA	1 cut(s)	946
KspAI	GTTAAC	2 cut(s)	910, 937
Kzo9I	GATC	4 cut(s)	262, 271, 829, 946
LmnI	GCTCC	2 cut(s)	341, 712
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	4 cut(s)	191, 506, 674, 839
MaeIII	GTNAC	4 cut(s)	172, 303, 443, 841
MalI	GATC	4 cut(s)	264, 273, 831, 948
MboI	GATC	4 cut(s)	262, 271, 829, 946
MboII	GAAGA	5 cut(s)	266, 376, 445, 452, 565
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	9 cut(s)	278, 285, 363, 393, 482, 718, 758, 963, 967
MlyI	GAGTC	1 cut(s)	206
MseI	TTAA	5 cut(s)	101, 396, 909, 936, 966
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	3 cut(s)	617, 768, 797
MspR9I	CCNGG	2 cut(s)	704, 769
MunI	CAATTG	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	704
NciI	CCSGG	1 cut(s)	769
NdeII	GATC	4 cut(s)	262, 271, 829, 946
NlaIII	CATG	4 cut(s)	353, 433, 745, 806
NlaIV	GGNNCC	2 cut(s)	526, 714
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	3 cut(s)	303, 443, 841
NspI	RCATGY	1 cut(s)	806
NspV	TTCGAA	1 cut(s)	729
PceI	AGGCCT	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	441
PshBI	ATTAAT	1 cut(s)	966
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	2 cut(s)	526, 714
PspPI	GGNCC	3 cut(s)	553, 745, 914
PspPPI	RGGWCCY	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	4 cut(s)	79, 322, 526, 960
RsaNI	GTAC	4 cut(s)	78, 321, 525, 959
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	5 cut(s)	101, 396, 909, 936, 966
Sau3AI	GATC	4 cut(s)	262, 271, 829, 946
Sau96I	GGNCC	3 cut(s)	553, 745, 914
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	704, 769
SetI	ASST	9 cut(s)	357, 533, 540, 555, 582, 626, 636, 942, 960
SfaNI	GCATC	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	729
SinI	GGWCC	2 cut(s)	553, 745
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	9 cut(s)	278, 285, 363, 393, 482, 718, 758, 963, 967
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	4 cut(s)	191, 506, 674, 839
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	702, 767
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	4 cut(s)	749, 836, 872, 907
TaqI	TCGA	3 cut(s)	297, 729, 882
TasI	AATT	9 cut(s)	278, 285, 363, 393, 482, 718, 758, 963, 967
TatI	WGTACW	1 cut(s)	77
Tru1I	TTAA	5 cut(s)	101, 396, 909, 936, 966
Tru9I	TTAA	5 cut(s)	101, 396, 909, 936, 966
TscAI	CASTG	3 cut(s)	42, 69, 634
TseFI	GTSAC	3 cut(s)	303, 443, 841
Tsp45I	GTSAC	3 cut(s)	303, 443, 841
TspDTI	ATGAA	6 cut(s)	42, 267, 376, 437, 752, 881
TspGWI	ACGGA	3 cut(s)	146, 417, 906
TspRI	CASTG	3 cut(s)	42, 69, 634
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	553, 745
VspI	ATTAAT	1 cut(s)	966
XagI	CCTNNNNNAGG	1 cut(s)	422
XapI	RAATTY	3 cut(s)	278, 363, 482
XceI	RCATGY	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	814
XspI	CTAG	4 cut(s)	191, 506, 674, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.