Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002335.1

Orthogroup ID

OG0012863

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2834

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1253 bp

gactatggaaacgcaacaagtatgttggtgtctctcttgttgggaagacattagcagtaatgggatttggaaaagttggatcagaagttgctagacgtgcaaaaggcttgggaatgcatgttatagcacatgatccatatgccccagctgacagagcccgtgccgttggtgtggatttggtctctttcgaccaggccatctccactgcagatttcgtgtctctgcatatgccacttacccctactacatcaaaggtgtttaatgatgatacgttttcaaagatgaagaagggtgttcgcatcattaatgttgcaaggggtggagtcattgatgaagatgcattagtgagagcccttgatagcggagttgtagctcaggctgcacttgatgtgttcacagaggagcctccatcaaaagaaagcaagttagtgcaacatgagaatgtcacagtcacacctcatctcggagctagtacaaaggaagcacaagaaggtgtagcaattgaaatagccgaggcagtagttggagcattgcaaggtgaactttctgcaaccgctgtcaatgcacccatggttcctcctgaggttatgttcgagttgtctccttatgttgttcttgctgagaagctgggaaagttagctgtacaattagtagcaggagggagtggaattacatctgtgagggtggtgtacaaatcagctcgagattctgatgacttggatactagacttctccgggctatgatcactaaaggcatcattgaaccgatatctacctcattcatcaatctagtaaatgctgattatgttgccaagcagaaaggtctgcgcataagtgaggaaaaggtatctgttgactcatctcctgagttccctgttgactcaatccaggtgcacatatccaatgtggactccaaatttgcaagttcagtttctgacaatggaagcataagcattgaggggaaagtgaaatatggggaaccccatctcacatgtttgggttcatttggcgtggacgtgagccttgaagggaatcttattttgtgccggcaggtggatcaacccggaatgattggcaatgtgggaaatattcttgggagccagaatgtgaatgtgagctttatgagtgtgggaagaaccatcctgaagaaagccatcatggctattggtgtagatgaggaaccaaacaaggagactttgaagaaaattggggatgtggctgctattgaagagtttgtgttccttaatctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

416

Amino Acids

44.25

Weight (kDa)

5.52

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17745 AT1G17745
fragaria_vesca	FvH4_6g37460
malus_domestica	MD09G1157900.v1.1 MD17G1143900.v1.1
prunus_persica	Prupe.3G168100_v2.0.a1
pyrus_communis	pycom09g07670 pycom17g13710
rosa_chinensis	RchiOBHm_Chr2g0150301
rosa_laevigata	RLG00000020484
rosa_multiflora	Rmu_sc0002335.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097310
rosa_rugosa	Rorug02G0420400
rosa_samantha	Rh2AG479300 Rh2BG491600 Rh2CG465500 Rh2DG500400
rosa_wichuraiana	Rw2G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1041
Acc16I	TGCGCA	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	1041
AciI	CCGC	2 cut(s)	362, 554
AclWI	GGATC	3 cut(s)	87, 127, 1064
AcsI	RAATTY	1 cut(s)	916
AcuI	CTGAAG	1 cut(s)	1165
AfaI	GTAC	3 cut(s)	474, 644, 691
AfiI	CCNNNNNNNGG	2 cut(s)	463, 1053
AflIII	ACRYGT	1 cut(s)	991
AgsI	TTSAA	6 cut(s)	278, 505, 763, 1027, 1200, 1228
AjiI	CACGTC	2 cut(s)	97, 1017
AjnI	CCWGG	2 cut(s)	191, 887
AluBI	AGCT	7 cut(s)	148, 373, 469, 627, 640, 700, 1118
AluI	AGCT	7 cut(s)	148, 373, 469, 627, 640, 700, 1118
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	5 cut(s)	36, 186, 224, 605, 1186
Alw44I	GTGCAC	1 cut(s)	892
AlwI	GGATC	3 cut(s)	87, 127, 1064
AlwNI	CAGNNNCTG	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	892
ApeKI	GCWGC	2 cut(s)	379, 1219
ApoI	RAATTY	1 cut(s)	916
ArsI	GACNNNNNNTTYG	2 cut(s)	901, 933
AseI	ATTAAT	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	830
AsuC2I	CCSGG	2 cut(s)	736, 1064
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	896
BanII	GRGCYC	2 cut(s)	159, 354
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	896
BbvI	GCAGC	2 cut(s)	366, 1206
BccI	CCATC	5 cut(s)	205, 417, 992, 1147, 1162
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	193, 889
BciVI	GTATCC	1 cut(s)	714
BclI	TGATCA	1 cut(s)	743
BcnI	CCSGG	2 cut(s)	736, 1064
BcoDI	GTCTC	5 cut(s)	36, 186, 224, 605, 1186
BfaI	CTAG	4 cut(s)	92, 470, 725, 790
BfmI	CTRYAG	2 cut(s)	206, 1249
BfuAI	ACCTGC	1 cut(s)	1041
BfuI	GTATCC	1 cut(s)	714
BglI	GCCNNNNNGGC	1 cut(s)	1159
BisI	GCNGC	2 cut(s)	380, 1220
BlsI	GCNGC	2 cut(s)	381, 1221
Bme1390I	CCNGG	4 cut(s)	193, 736, 889, 1064
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	2 cut(s)	97, 1017
BmiI	GGNNCC	5 cut(s)	404, 575, 980, 1099, 1181
BmrFI	CCNGG	4 cut(s)	193, 736, 889, 1064
BmsI	GCATC	3 cut(s)	308, 327, 764
BpiI	GAAGAC	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	736, 1064
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	512, 569
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 1053
Bse118I	RCCGGY	1 cut(s)	1046
Bse21I	CCTNAGG	1 cut(s)	581
Bse3DI	GCAATG	2 cut(s)	529, 1083
BseBI	CCWGG	2 cut(s)	193, 889
BseDI	CCNNGG	2 cut(s)	512, 569
BseGI	GGATG	2 cut(s)	1139, 1218
BseLI	CCNNNNNNNGG	2 cut(s)	463, 1053
BseMI	GCAATG	2 cut(s)	529, 1083
BseMII	CTCAG	4 cut(s)	388, 572, 611, 857
BseRI	GAGGAG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	896
BseXI	GCAGC	2 cut(s)	366, 1206
BseYI	CCCAGC	2 cut(s)	144, 627
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	896
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	3 cut(s)	735, 1047, 1064
BslI	CCNNNNNNNGG	2 cut(s)	463, 1053
BsmAI	GTCTC	5 cut(s)	36, 186, 224, 605, 1186
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	3 cut(s)	159, 354, 896
Bsp1407I	TGTACA	2 cut(s)	642, 689
Bsp143I	GATC	4 cut(s)	79, 132, 743, 1056
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	2 cut(s)	362, 554
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	4 cut(s)	387, 573, 612, 858
BspLI	GGNNCC	5 cut(s)	404, 575, 980, 1099, 1181
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	1041
BspPI	GGATC	3 cut(s)	87, 127, 1064
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	2 cut(s)	529, 1083
BsrFI	RCCGGY	1 cut(s)	1046
BsrGI	TGTACA	2 cut(s)	642, 689
BssAI	RCCGGY	1 cut(s)	1046
BssECI	CCNNGG	2 cut(s)	512, 569
BssMI	GATC	4 cut(s)	79, 132, 743, 1056
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	193, 889
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	1223
BstAUI	TGTACA	2 cut(s)	642, 689
BstC8I	GCNNGC	1 cut(s)	1048
BstDEI	CTNAG	4 cut(s)	374, 581, 620, 866
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	1139, 1218
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	4 cut(s)	82, 135, 746, 1059
BstMAI	GTCTC	5 cut(s)	36, 186, 224, 605, 1186
BstMBI	GATC	4 cut(s)	79, 132, 743, 1056
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 154, 379, 562, 1159
BstNI	CCWGG	2 cut(s)	193, 889
BstNSI	RCATGY	2 cut(s)	121, 995
BstSCI	CCNGG	4 cut(s)	191, 734, 887, 1062
BstSFI	CTRYAG	2 cut(s)	206, 1249
BstSLI	GKGCMC	1 cut(s)	896
BstV1I	GCAGC	2 cut(s)	366, 1206
BstV2I	GAAGAC	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	581
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	569
BtrI	CACGTC	2 cut(s)	97, 1017
BtsCI	GGATG	2 cut(s)	1139, 1218
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	1041
Cac8I	GCNNGC	1 cut(s)	1048
CaiI	CAGNNNCTG	1 cut(s)	934
CfoI	GCGC	1 cut(s)	830
Cfr10I	RCCGGY	1 cut(s)	1046
Csp6I	GTAC	3 cut(s)	473, 643, 690
CviAII	CATG	6 cut(s)	118, 130, 436, 570, 992, 1158
CviQI	GTAC	3 cut(s)	473, 643, 690
DdeI	CTNAG	4 cut(s)	374, 581, 620, 866
DpnI	GATC	4 cut(s)	81, 134, 745, 1058
DpnII	GATC	4 cut(s)	79, 132, 743, 1056
Eam1104I	CTCTTC	1 cut(s)	1223
EarI	CTCTTC	1 cut(s)	1223
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	2 cut(s)	159, 354
Eco31I	GGTCTC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	1165
Eco81I	CCTNAGG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	701
EcoRII	CCWGG	2 cut(s)	191, 887
EcoRV	GATATC	1 cut(s)	770
EcoT14I	CCWWGG	1 cut(s)	569
EcoT22I	ATGCAT	2 cut(s)	119, 342
EcoT38I	GRGCYC	2 cut(s)	159, 354
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	6 cut(s)	121, 133, 439, 573, 995, 1161
FalI	AAGNNNNNCTT	4 cut(s)	527, 559, 1019, 1051
FatI	CATG	6 cut(s)	117, 129, 435, 569, 991, 1157
FauNDI	CATATG	2 cut(s)	138, 227
FbaI	TGATCA	1 cut(s)	743
Fnu4HI	GCNGC	2 cut(s)	380, 1220
FokI	GGATG	2 cut(s)	1126, 1225
FriOI	GRGCYC	2 cut(s)	159, 354
Fsp4HI	GCNGC	2 cut(s)	380, 1220
FspBI	CTAG	4 cut(s)	92, 470, 725, 790
FspI	TGCGCA	1 cut(s)	829
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	2 cut(s)	380, 1220
GsaI	CCCAGC	2 cut(s)	148, 631
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	3 cut(s)	735, 1047, 1064
HhaI	GCGC	1 cut(s)	830
Hin1II	CATG	6 cut(s)	121, 133, 439, 573, 995, 1161
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HincII	GTYRAC	2 cut(s)	855, 879
HindII	GTYRAC	2 cut(s)	855, 879
HinfI	GANTC	6 cut(s)	323, 706, 856, 880, 910, 1032
HpaII	CCGG	3 cut(s)	735, 1047, 1064
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	8 cut(s)	395, 541, 690, 855, 879, 894, 909, 1014
Hpy188I	TCNGA	4 cut(s)	84, 466, 711, 936
Hpy188III	TCNNGA	4 cut(s)	580, 703, 865, 1143
Hpy8I	GTNNAC	8 cut(s)	395, 541, 690, 855, 879, 894, 909, 1014
HpyAV	CCTTC	3 cut(s)	282, 484, 1021
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	3 cut(s)	96, 271, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 154, 379, 562, 1159
HpyF3I	CTNAG	4 cut(s)	374, 581, 620, 866
HpySE526I	ACGT	3 cut(s)	96, 271, 1016
Hsp92II	CATG	6 cut(s)	121, 133, 439, 573, 995, 1161
HspAI	GCGC	1 cut(s)	828
KroI	GCCGGC	1 cut(s)	1046
KroNI	GCCGGC	1 cut(s)	1048
Ksp22I	TGATCA	1 cut(s)	743
Kzo9I	GATC	4 cut(s)	79, 132, 743, 1056
LmnI	GCTCC	4 cut(s)	402, 466, 526, 1097
Lsp1109I	GCAGC	2 cut(s)	366, 1206
LweI	GCATC	3 cut(s)	308, 327, 764
MaeI	CTAG	4 cut(s)	92, 470, 725, 790
MaeII	ACGT	3 cut(s)	96, 271, 1016
MaeIII	GTNAC	2 cut(s)	444, 450
MalI	GATC	4 cut(s)	81, 134, 745, 1058
MboI	GATC	4 cut(s)	79, 132, 743, 1056
MboII	GAAGA	7 cut(s)	57, 297, 346, 1145, 1158, 1212, 1240
MfeI	CAATTG	1 cut(s)	500
MhlI	GDGCHC	3 cut(s)	159, 354, 896
MluCI	AATT	5 cut(s)	500, 646, 668, 916, 1205
MlyI	GAGTC	4 cut(s)	332, 850, 874, 904
MmeI	TCCRAC	2 cut(s)	57, 504
Mph1103I	ATGCAT	2 cut(s)	119, 342
MroNI	GCCGGC	1 cut(s)	1046
MseI	TTAA	3 cut(s)	260, 305, 1244
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	2 cut(s)	148, 556
MspI	CCGG	3 cut(s)	735, 1047, 1064
MspR9I	CCNGG	4 cut(s)	193, 736, 889, 1064
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	193, 889
MwoI	GCNNNNNNNGC	5 cut(s)	97, 154, 379, 562, 1159
NaeI	GCCGGC	1 cut(s)	1048
NciI	CCSGG	2 cut(s)	736, 1064
NcoI	CCATGG	1 cut(s)	569
NdeI	CATATG	2 cut(s)	138, 227
NdeII	GATC	4 cut(s)	79, 132, 743, 1056
NgoMIV	GCCGGC	1 cut(s)	1046
NlaIII	CATG	6 cut(s)	121, 133, 439, 573, 995, 1161
NlaIV	GGNNCC	5 cut(s)	404, 575, 980, 1099, 1181
NmeAIII	GCCGAG	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	444, 450
NsbI	TGCGCA	1 cut(s)	829
NsiI	ATGCAT	2 cut(s)	119, 342
NspI	RCATGY	2 cut(s)	121, 995
PaeR7I	CTCGAG	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	1041
PciI	ACATGT	1 cut(s)	991
PctI	GAATGC	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	1048
PfeI	GAWTC	2 cut(s)	706, 1032
PkrI	GCNGC	2 cut(s)	381, 1221
PleI	GAGTC	4 cut(s)	331, 850, 874, 904
PpsI	GAGTC	4 cut(s)	331, 850, 874, 904
PscI	ACATGT	1 cut(s)	991
PshBI	ATTAAT	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	191, 887
PspFI	CCCAGC	2 cut(s)	144, 627
PspGI	CCWGG	2 cut(s)	191, 887
PspN4I	GGNNCC	5 cut(s)	404, 575, 980, 1099, 1181
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	934
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	3 cut(s)	474, 644, 691
RsaNI	GTAC	3 cut(s)	473, 643, 690
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	260, 305, 1244
SatI	GCNGC	2 cut(s)	380, 1220
Sau3AI	GATC	4 cut(s)	79, 132, 743, 1056
SchI	GAGTC	4 cut(s)	332, 850, 874, 904
ScrFI	CCNGG	4 cut(s)	193, 736, 889, 1064
SduI	GDGCHC	3 cut(s)	159, 354, 896
SfaNI	GCATC	3 cut(s)	308, 327, 764
SfcI	CTRYAG	2 cut(s)	206, 1249
Sfr274I	CTCGAG	1 cut(s)	701
SlaI	CTCGAG	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	5 cut(s)	500, 646, 668, 916, 1205
SsiI	CCGC	2 cut(s)	362, 554
SspI	AATATT	1 cut(s)	1089
SspMI	CTAG	4 cut(s)	92, 470, 725, 790
StyD4I	CCNGG	4 cut(s)	191, 734, 887, 1062
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	3 cut(s)	99, 274, 1019
TaqI	TCGA	3 cut(s)	188, 593, 702
TasI	AATT	5 cut(s)	500, 646, 668, 916, 1205
TatI	WGTACW	3 cut(s)	472, 642, 689
TfiI	GAWTC	2 cut(s)	706, 1032
Tru1I	TTAA	3 cut(s)	260, 305, 1244
Tru9I	TTAA	3 cut(s)	260, 305, 1244
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	444, 450
TseI	GCWGC	2 cut(s)	379, 1219
Tsp45I	GTSAC	2 cut(s)	444, 450
TspDTI	ATGAA	4 cut(s)	298, 347, 771, 992
TspRI	CASTG	1 cut(s)	210
VneI	GTGCAC	1 cut(s)	892
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	1 cut(s)	916
XceI	RCATGY	2 cut(s)	121, 995
XhoI	CTCGAG	1 cut(s)	701
XspI	CTAG	4 cut(s)	92, 470, 725, 790
Zsp2I	ATGCAT	2 cut(s)	119, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.