Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001677

Physical Location & Seq

Genomic Coordinates Reverse (-)

6706267 .. 6711202

Gene Structure 4936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08640.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGAAGGAGCAGCCCATAGTCTCAAAAAATGAGAGGTCAGTTTCTCCTAATCCTTCTCCGGATGCTGCCACCATAGGTCTTCCAAGGGAGGCAGCAGGTCAATCAGGTCCTTTTGGTTCAGGTGGAGATCACACTGTTTTCCCACCTAATGTTTATGCCCCTCAGGCCCAGCCCTTCTACTATAGAGGTTATGAAAATGGAACTCGTGAGTGGGAAGAATATTCTCCATACATCAACACCGAAGGATTGGAGATTAATTCTCCTGGTGTCTACAATGAGAATCCTTCTTTAGTCTTTCATTCTGGATATGGCTACAATCCGCAAATGCCGTATGGGCCTTACTCCCCAGTTACAACACCAATGCCATCTGTAGGTGGAGATGCCCAGTTATATTCCCCCCAGCAATACCCATTTTCGGGACCGCCTTATTATCAGCAGCTTGGTCCTCCGAGCATGCAATATATTACCTCACCTACGACAGTTTCACAACCAGAGCTCACCACCTTAGTTAATATCGACCAACAAGGTGACAATATGCTTTTTGGACCAAGGCCTGGTTATCATCCTCCAGTGGGATCTATTGGTAGAGGCAATTTTCCTGGAAATCCTGGTAGTCATGGTTTTCATGACTTGCAGCAAGGATTTGATGGATTTAGATCTGGGGGTCTTTGGTCAGACTGGCCAAAACCCTCAGACAGGCACAGGTCTCCCTTATCGCCATCAGTGTCTCCACAGCCAATTGGCCCACTGGGCTCATATGGGCAGAATGTTAGCATGGCTTCTCAACAACAAAGGTCGATGTATGGGTTTGGATCTGGTTCAAACTCTTATAACAGAGGCTACATGCCCAGTGGTTATAATCAGGGATCTGGCCTTGGAAGTGCATCGTTTTCTAGCTTTGGAGCTAACAATCGTGGCTTTCTATCATTAGAAAATAGCAAGCGGCATGTGAGGGGTAGTGGTCCTATATGCAGTTGCAATGCCCCCCTTGATATTCTTTGTGAGCAGAATCGAGGCCCGAGGGCCTCAAAGCCAAAGAGTCAAATCATGGCTGATAGCTCTGTGGAGAACACCAAACATAATGCTTCTACAAACAAGGTCCTTGATGAATCATTCAACAGGCCTGATTTTGTAACAGAGTACAAAGATGCTAAGTTCTTCATTATCAAGTCATACAGTGAAGATAATGTTCACAAGAGCATCAAGTATGGTGTCTGGGCCAGCACGCCAAACGGTAACAGAAAGTTGGATGCTGCATATCGTGAAGCTAAGGAGATGCATGATGGCTGCCCAATTTTTCTCTTCTTTTCGGTAAATGCTAGTGCTCAGTTCTGTGGGGTGGCTGAAATGATTGGACCTGTTGATTTTGACAAGAGTCTGGATTACTGGCAGCAAGACAAATGGAGTGGCCAGTTCCCTGTGAAGTGGCATATGATTAAAGACGTCCCCAATAGTCAGTTTCGTCACATCATTCTTGAAAATAATGACAACAAGCCTGTAACTAACAGCCGAGATACTCAAGAGGTAAAATTGGAGCAGGGAATTGAGATGTTGAATATCTTCAAGAATTATGAAACAGAGATGTCGATTCTAGATGACTTTGAATTTTATGAAGACCGGCAGAAAGCAATGCAAGAGCGGAAGGCCAGACAGCAAGCCAGCCTGATTGCTGTCGGTGTAGTCGGAGAAAATGAGCACAAAAATGCTGTTCAAATTCCCAGTGATTTCATCAAGCACATGTCCAAGAGTTTTGCTCAAGTTGTCCGATTGGATGAGGGCAGTAAAGAAGTTAATACCCTTTCTGAAAGAGCTAGTCCTGCTTCTGACGGCTCCATTGGTGCCAGAGTAAAACTTGAAGATGCGATGCCAGCTTCCGTGCCTTCTGTTCAGACCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

633

Amino Acids

69.74

Weight (kDa)

5.83

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13060 AT3G13060 AT3G13060 AT3G13060 AT3G13060 AT3G13060
fragaria_vesca	FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470
malus_domestica	MD09G1168700.v1.1 MD17G1158000.v1.1
prunus_persica	Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1
pyrus_communis	pycom09g08640 pycom17g15140
rosa_chinensis	RchiOBHm_Chr2g0148601
rosa_laevigata	RLG00000020354
rosa_multiflora	Rmu_sc0000048.1_g000023
rosa_roxburghii	Rroxscaffold_2G00098600
rosa_rugosa	Rorug02G0407700 Rorug02G0407700 Rorug02G0407800 Rorug02G0407900 Rorug02G0407900 Rorug02G0408000
rosa_samantha	Rh2AG466400 Rh2BG479500 Rh2CG452900 Rh2DG488300
rosa_wichuraiana	Rw2G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	831, 858
AatII	GACGTC	1 cut(s)	1446
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	1838
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	1639
AccI	GTMKAC	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	4 cut(s)	320, 422, 943, 1639
AclWI	GGATC	3 cut(s)	583, 820, 874
AcoI	YGGCCR	2 cut(s)	680, 1408
AcsI	RAATTY	2 cut(s)	1604, 1713
AcyI	GRCGYC	1 cut(s)	1443
AfaI	GTAC	1 cut(s)	1142
AfiI	CCNNNNNNNGG	6 cut(s)	371, 415, 416, 554, 572, 696
AflIII	ACRYGT	1 cut(s)	1737
AgeI	ACCGGT	1 cut(s)	1892
AgsI	TTSAA	8 cut(s)	822, 1117, 1478, 1555, 1564, 1604, 1712, 1856
AjnI	CCWGG	4 cut(s)	262, 553, 598, 607
AluBI	AGCT	8 cut(s)	439, 496, 897, 905, 1059, 1268, 1811, 1871
AluI	AGCT	8 cut(s)	439, 496, 897, 905, 1059, 1268, 1811, 1871
Alw21I	GWGCWC	3 cut(s)	498, 1327, 1698
Alw26I	GTCTC	3 cut(s)	25, 711, 732
AlwI	GGATC	3 cut(s)	583, 820, 874
Ama87I	CYCGRG	1 cut(s)	1018
Aor13HI	TCCGGA	1 cut(s)	58
ApeKI	GCWGC	8 cut(s)	10, 65, 92, 436, 634, 1253, 1287, 1390
ApoI	RAATTY	2 cut(s)	1604, 1713
AseI	ATTAAT	1 cut(s)	255
AsiGI	ACCGGT	1 cut(s)	1892
Asp700I	GAANNNNTTC	1 cut(s)	1559
AsuHPI	GGTGA	3 cut(s)	462, 490, 539
AvaI	CYCGRG	1 cut(s)	1018
AvaII	GGWCC	7 cut(s)	107, 419, 443, 545, 962, 1099, 1355
AxyI	CCTNAGG	1 cut(s)	162
BalI	TGGCCA	2 cut(s)	682, 1410
BanI	GGYRCC	1 cut(s)	1838
BanII	GRGCYC	2 cut(s)	498, 755
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	71, 1620
Bbv12I	GWGCWC	3 cut(s)	498, 1327, 1698
BbvI	GCAGC	8 cut(s)	22, 52, 104, 448, 646, 1240, 1274, 1402
BccI	CCATC	4 cut(s)	373, 641, 727, 1277
BceAI	ACGGC	2 cut(s)	313, 1843
BciT130I	CCWGG	4 cut(s)	264, 555, 600, 609
BcoDI	GTCTC	3 cut(s)	25, 711, 732
BfaI	CTAG	4 cut(s)	894, 1320, 1592, 1812
BfmI	CTRYAG	2 cut(s)	181, 369
BfuAI	ACCTGC	1 cut(s)	86
BglI	GCCNNNNNGGC	3 cut(s)	164, 334, 750
BglII	AGATCT	1 cut(s)	656
BisI	GCNGC	9 cut(s)	11, 66, 93, 437, 635, 944, 1254, 1288, 1391
BlsI	GCNGC	9 cut(s)	12, 67, 94, 438, 636, 945, 1255, 1289, 1392
Bme1390I	CCNGG	4 cut(s)	264, 555, 600, 609
Bme18I	GGWCC	7 cut(s)	107, 419, 443, 545, 962, 1099, 1355
BmeT110I	CYCGRG	1 cut(s)	1018
BmiI	GGNNCC	3 cut(s)	420, 1831, 1840
BmrFI	CCNGG	4 cut(s)	264, 555, 600, 609
BmrI	ACTGGG	5 cut(s)	341, 379, 758, 843, 1713
BmsI	GCATC	9 cut(s)	52, 370, 893, 1138, 1209, 1240, 1266, 1849, 1854
BmuI	ACTGGG	5 cut(s)	341, 379, 758, 843, 1713
BoxI	GACNNNNGTC	1 cut(s)	1374
BpiI	GAAGAC	2 cut(s)	71, 1620
BplI	GAGNNNNNCTC	2 cut(s)	1738, 1770
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	1269
BpuEI	CTTGAG	2 cut(s)	1503, 1740
BsaBI	GATNNNNATC	1 cut(s)	655
BsaHI	GRCGYC	1 cut(s)	1443
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	4 cut(s)	83, 548, 874, 1019
BsaWI	WCCGGW	2 cut(s)	58, 1892
Bsc4I	CCNNNNNNNGG	6 cut(s)	371, 415, 416, 554, 572, 696
Bse118I	RCCGGY	2 cut(s)	1617, 1892
Bse1I	ACTGG	9 cut(s)	347, 385, 569, 683, 753, 849, 1391, 1411, 1719
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	985, 1635
Bse8I	GATNNNNATC	1 cut(s)	655
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	4 cut(s)	264, 555, 600, 609
BseDI	CCNNGG	4 cut(s)	83, 548, 874, 1019
BseGI	GGATG	4 cut(s)	67, 562, 1255, 1777
BseJI	GATNNNNATC	1 cut(s)	655
BseLI	CCNNNNNNNGG	6 cut(s)	371, 415, 416, 554, 572, 696
BseMI	GCAATG	2 cut(s)	985, 1635
BseMII	CTCAG	3 cut(s)	176, 705, 1340
BseNI	ACTGG	9 cut(s)	347, 385, 569, 683, 753, 849, 1391, 1411, 1719
BseXI	GCAGC	8 cut(s)	22, 52, 104, 448, 646, 1240, 1274, 1402
BseYI	CCCAGC	2 cut(s)	168, 399
BshNI	GGYRCC	1 cut(s)	1838
BshTI	ACCGGT	1 cut(s)	1892
BsiHKAI	GWGCWC	3 cut(s)	498, 1327, 1698
BsiHKCI	CYCGRG	1 cut(s)	1018
BsiSI	CCGG	3 cut(s)	59, 1618, 1893
BslFI	GGGAC	2 cut(s)	432, 1430
BslI	CCNNNNNNNGG	6 cut(s)	371, 415, 416, 554, 572, 696
BsmAI	GTCTC	3 cut(s)	25, 711, 732
BsmFI	GGGAC	2 cut(s)	432, 1430
Bso31I	GGTCTC	1 cut(s)	711
BsoBI	CYCGRG	1 cut(s)	1018
Bsp1286I	GDGCHC	4 cut(s)	498, 755, 1327, 1698
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	127, 575, 656, 812, 866
BspACI	CCGC	4 cut(s)	320, 422, 943, 1639
BspCNI	CTCAG	3 cut(s)	175, 704, 1339
BspEI	TCCGGA	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	3 cut(s)	420, 1831, 1840
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	3 cut(s)	583, 820, 874
BspT107I	GGYRCC	1 cut(s)	1838
BspTNI	GGTCTC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	1639
BsrDI	GCAATG	2 cut(s)	985, 1635
BsrFI	RCCGGY	2 cut(s)	1617, 1892
BsrI	ACTGG	9 cut(s)	347, 385, 569, 683, 753, 849, 1391, 1411, 1719
BssAI	RCCGGY	2 cut(s)	1617, 1892
BssECI	CCNNGG	4 cut(s)	83, 548, 874, 1019
BssMI	GATC	5 cut(s)	127, 575, 656, 812, 866
BssNI	GRCGYC	1 cut(s)	1443
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	3 cut(s)	83, 548, 874
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	4 cut(s)	264, 555, 600, 609
Bst4CI	ACNGT	4 cut(s)	136, 481, 1178, 1235
Bst6I	CTCTTC	1 cut(s)	1307
BstACI	GRCGYC	1 cut(s)	1443
BstC8I	GCNNGC	7 cut(s)	455, 941, 1222, 1226, 1656, 1660, 1869
BstDEI	CTNAG	6 cut(s)	162, 505, 691, 1152, 1269, 1326
BstENI	CCTNNNNNAGG	1 cut(s)	694
BstF5I	GGATG	4 cut(s)	67, 562, 1255, 1777
BstKTI	GATC	5 cut(s)	130, 578, 659, 815, 869
BstMAI	GTCTC	3 cut(s)	25, 711, 732
BstMBI	GATC	5 cut(s)	127, 575, 656, 812, 866
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 334, 750, 1817, 1868
BstNI	CCWGG	4 cut(s)	264, 555, 600, 609
BstNSI	RCATGY	4 cut(s)	457, 847, 950, 1741
BstPAI	GACNNNNGTC	1 cut(s)	1374
BstSCI	CCNGG	4 cut(s)	262, 553, 598, 607
BstSFI	CTRYAG	2 cut(s)	181, 369
BstV1I	GCAGC	8 cut(s)	22, 52, 104, 448, 646, 1240, 1274, 1402
BstV2I	GAAGAC	2 cut(s)	71, 1620
BstX2I	RGATCY	4 cut(s)	575, 656, 812, 866
BstYI	RGATCY	4 cut(s)	575, 656, 812, 866
Bsu36I	CCTNAGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	1877
BtsCI	GGATG	4 cut(s)	67, 562, 1255, 1777
BtsIMutI	CAGTG	7 cut(s)	132, 576, 729, 746, 856, 1183, 1726
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	7 cut(s)	455, 941, 1222, 1226, 1656, 1660, 1869
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	2 cut(s)	1617, 1892
Csp6I	GTAC	1 cut(s)	1141
CspAI	ACCGGT	1 cut(s)	1892
CspCI	CAANNNNNGTGG	2 cut(s)	1387, 1422
CviAII	CATG	9 cut(s)	454, 617, 626, 775, 844, 947, 1048, 1280, 1738
CviQI	GTAC	1 cut(s)	1141
DdeI	CTNAG	6 cut(s)	162, 505, 691, 1152, 1269, 1326
DpnI	GATC	5 cut(s)	129, 577, 658, 814, 868
DpnII	GATC	5 cut(s)	127, 575, 656, 812, 866
EaeI	YGGCCR	2 cut(s)	680, 1408
Eam1104I	CTCTTC	1 cut(s)	1307
EarI	CTCTTC	1 cut(s)	1307
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	3 cut(s)	83, 548, 874
Eco147I	AGGCCT	2 cut(s)	553, 1123
Eco24I	GRGCYC	2 cut(s)	498, 755
Eco31I	GGTCTC	1 cut(s)	711
Eco47I	GGWCC	7 cut(s)	107, 419, 443, 545, 962, 1099, 1355
Eco53kI	GAGCTC	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	1018
EcoICRI	GAGCTC	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	694
EcoO109I	RGGNCCY	3 cut(s)	107, 1023, 1099
EcoRII	CCWGG	4 cut(s)	262, 553, 598, 607
EcoT14I	CCWWGG	3 cut(s)	83, 548, 874
EcoT22I	ATGCAT	1 cut(s)	1281
EcoT38I	GRGCYC	2 cut(s)	498, 755
ErhI	CCWWGG	3 cut(s)	83, 548, 874
FaeI	CATG	9 cut(s)	457, 620, 629, 778, 847, 950, 1051, 1283, 1741
FaqI	GGGAC	2 cut(s)	432, 1430
FatI	CATG	9 cut(s)	453, 616, 625, 774, 843, 946, 1047, 1279, 1737
FauNDI	CATATG	2 cut(s)	757, 1431
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	9 cut(s)	11, 66, 93, 437, 635, 944, 1254, 1288, 1391
FokI	GGATG	4 cut(s)	74, 549, 1262, 1784
FriOI	GRGCYC	2 cut(s)	498, 755
Fsp4HI	GCNGC	9 cut(s)	11, 66, 93, 437, 635, 944, 1254, 1288, 1391
FspBI	CTAG	4 cut(s)	894, 1320, 1592, 1812
GluI	GCNGC	9 cut(s)	11, 66, 93, 437, 635, 944, 1254, 1288, 1391
GsaI	CCCAGC	2 cut(s)	172, 403
GsuI	CTGGAG	1 cut(s)	552
HapII	CCGG	3 cut(s)	59, 1618, 1893
Hin1I	GRCGYC	1 cut(s)	1443
Hin1II	CATG	9 cut(s)	457, 620, 629, 778, 847, 950, 1051, 1283, 1741
HinfI	GANTC	6 cut(s)	280, 1009, 1039, 1109, 1375, 1588
HpaII	CCGG	3 cut(s)	59, 1618, 1893
HphI	GGTGA	3 cut(s)	462, 490, 539
Hpy166II	GTNNAC	2 cut(s)	271, 1192
Hpy188I	TCNGA	8 cut(s)	450, 676, 694, 1685, 1766, 1804, 1825, 1890
Hpy8I	GTNNAC	2 cut(s)	271, 1192
HpyAV	CCTTC	6 cut(s)	63, 184, 236, 294, 1636, 1890
HpyCH4III	ACNGT	4 cut(s)	136, 481, 1178, 1235
HpyCH4IV	ACGT	1 cut(s)	1443
HpyCH4V	TGCA	8 cut(s)	457, 634, 884, 972, 978, 1256, 1279, 1633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 334, 750, 1817, 1868
HpyF3I	CTNAG	6 cut(s)	162, 505, 691, 1152, 1269, 1326
HpySE526I	ACGT	1 cut(s)	1443
Hsp92I	GRCGYC	1 cut(s)	1443
Hsp92II	CATG	9 cut(s)	457, 620, 629, 778, 847, 950, 1051, 1283, 1741
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	127, 575, 656, 812, 866
LmnI	GCTCC	4 cut(s)	7, 902, 1534, 1835
Lsp1109I	GCAGC	8 cut(s)	22, 52, 104, 448, 646, 1240, 1274, 1402
LweI	GCATC	9 cut(s)	52, 370, 893, 1138, 1209, 1240, 1266, 1849, 1854
MaeI	CTAG	4 cut(s)	894, 1320, 1592, 1812
MaeII	ACGT	1 cut(s)	1443
MaeIII	GTNAC	6 cut(s)	349, 527, 1132, 1235, 1463, 1498
MalI	GATC	5 cut(s)	129, 577, 658, 814, 868
MbiI	CCGCTC	1 cut(s)	1639
MboI	GATC	5 cut(s)	127, 575, 656, 812, 866
MboII	GAAGA	8 cut(s)	71, 227, 1150, 1193, 1294, 1552, 1625, 1868
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	4 cut(s)	575, 656, 812, 866
MhlI	GDGCHC	4 cut(s)	498, 755, 1327, 1698
MlsI	TGGCCA	2 cut(s)	682, 1410
MluCI	AATT	9 cut(s)	256, 592, 738, 1293, 1529, 1542, 1567, 1604, 1713
MluNI	TGGCCA	2 cut(s)	682, 1410
MlyI	GAGTC	2 cut(s)	1048, 1384
MmeI	TCCRAC	2 cut(s)	1227, 1663
Mox20I	TGGCCA	2 cut(s)	682, 1410
Mph1103I	ATGCAT	1 cut(s)	1281
MroI	TCCGGA	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	1559
MscI	TGGCCA	2 cut(s)	682, 1410
MseI	TTAA	4 cut(s)	255, 510, 1437, 1791
MslI	CAYNNNNRTG	1 cut(s)	1701
Msp20I	TGGCCA	2 cut(s)	682, 1410
MspI	CCGG	3 cut(s)	59, 1618, 1893
MspR9I	CCNGG	4 cut(s)	264, 555, 600, 609
MunI	CAATTG	1 cut(s)	738
MvaI	CCWGG	4 cut(s)	264, 555, 600, 609
MwoI	GCNNNNNNNGC	5 cut(s)	164, 334, 750, 1817, 1868
NdeI	CATATG	2 cut(s)	757, 1431
NdeII	GATC	5 cut(s)	127, 575, 656, 812, 866
NlaIII	CATG	9 cut(s)	457, 620, 629, 778, 847, 950, 1051, 1283, 1741
NlaIV	GGNNCC	3 cut(s)	420, 1831, 1840
NmeAIII	GCCGAG	1 cut(s)	1535
NmuCI	GTSAC	2 cut(s)	527, 1463
NsiI	ATGCAT	1 cut(s)	1281
NspI	RCATGY	4 cut(s)	457, 847, 950, 1741
PaeI	GCATGC	1 cut(s)	457
PagI	TCATGA	1 cut(s)	625
PceI	AGGCCT	2 cut(s)	553, 1123
PciI	ACATGT	1 cut(s)	1737
PdmI	GAANNNNTTC	1 cut(s)	1559
PfeI	GAWTC	4 cut(s)	280, 1009, 1109, 1588
PflMI	CCANNNNNTGG	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	598
PinAI	ACCGGT	1 cut(s)	1892
PkrI	GCNGC	9 cut(s)	12, 67, 94, 438, 636, 945, 1255, 1289, 1392
PleI	GAGTC	2 cut(s)	1047, 1383
PpsI	GAGTC	2 cut(s)	1047, 1383
PpuMI	RGGWCCY	2 cut(s)	107, 1099
PscI	ACATGT	1 cut(s)	1737
PshAI	GACNNNNGTC	1 cut(s)	1374
PshBI	ATTAAT	1 cut(s)	255
PsiI	TTATAA	2 cut(s)	831, 858
Psp124BI	GAGCTC	1 cut(s)	498
Psp5II	RGGWCCY	2 cut(s)	107, 1099
Psp6I	CCWGG	4 cut(s)	262, 553, 598, 607
PspFI	CCCAGC	2 cut(s)	168, 399
PspGI	CCWGG	4 cut(s)	262, 553, 598, 607
PspN4I	GGNNCC	3 cut(s)	420, 1831, 1840
PspPPI	RGGWCCY	2 cut(s)	107, 1099
PsuI	RGATCY	4 cut(s)	575, 656, 812, 866
RsaI	GTAC	1 cut(s)	1142
RsaNI	GTAC	1 cut(s)	1141
RseI	CAYNNNNRTG	1 cut(s)	1701
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	255, 510, 1437, 1791
SatI	GCNGC	9 cut(s)	11, 66, 93, 437, 635, 944, 1254, 1288, 1391
Sau3AI	GATC	5 cut(s)	127, 575, 656, 812, 866
SchI	GAGTC	2 cut(s)	1048, 1384
ScrFI	CCNGG	4 cut(s)	264, 555, 600, 609
SduI	GDGCHC	4 cut(s)	498, 755, 1327, 1698
SfaNI	GCATC	9 cut(s)	52, 370, 893, 1138, 1209, 1240, 1266, 1849, 1854
SfcI	CTRYAG	2 cut(s)	181, 369
SinI	GGWCC	7 cut(s)	107, 419, 443, 545, 962, 1099, 1355
SmiMI	CAYNNNNRTG	1 cut(s)	1701
SmlI	CTYRAG	2 cut(s)	1518, 1755
SmoI	CTYRAG	2 cut(s)	1518, 1755
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	9 cut(s)	256, 592, 738, 1293, 1529, 1542, 1567, 1604, 1713
SseBI	AGGCCT	2 cut(s)	553, 1123
SsiI	CCGC	4 cut(s)	320, 422, 943, 1639
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	4 cut(s)	894, 1320, 1592, 1812
SstI	GAGCTC	1 cut(s)	498
StuI	AGGCCT	2 cut(s)	553, 1123
StyD4I	CCNGG	4 cut(s)	262, 553, 598, 607
StyI	CCWWGG	3 cut(s)	83, 548, 874
TaaI	ACNGT	4 cut(s)	136, 481, 1178, 1235
TaiI	ACGT	1 cut(s)	1446
TaqI	TCGA	4 cut(s)	516, 797, 1012, 1586
TasI	AATT	9 cut(s)	256, 592, 738, 1293, 1529, 1542, 1567, 1604, 1713
TatI	WGTACW	1 cut(s)	1140
TauI	GCSGC	1 cut(s)	946
TfiI	GAWTC	4 cut(s)	280, 1009, 1109, 1588
Tru1I	TTAA	4 cut(s)	255, 510, 1437, 1791
Tru9I	TTAA	4 cut(s)	255, 510, 1437, 1791
TscAI	CASTG	7 cut(s)	139, 576, 729, 753, 856, 1183, 1726
TseFI	GTSAC	2 cut(s)	527, 1463
TseI	GCWGC	8 cut(s)	10, 65, 92, 436, 634, 1253, 1287, 1390
Tsp45I	GTSAC	2 cut(s)	527, 1463
TspDTI	ATGAA	9 cut(s)	17, 207, 287, 614, 1122, 1150, 1587, 1626, 1717
TspGWI	ACGGA	1 cut(s)	1864
TspRI	CASTG	7 cut(s)	139, 576, 729, 753, 856, 1183, 1726
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	7 cut(s)	107, 419, 443, 545, 962, 1099, 1355
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	694
XapI	RAATTY	2 cut(s)	1604, 1713
XbaI	TCTAGA	1 cut(s)	1591
XceI	RCATGY	4 cut(s)	457, 847, 950, 1741
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	1559
XspI	CTAG	4 cut(s)	894, 1320, 1592, 1812
ZraI	GACGTC	1 cut(s)	1444
Zsp2I	ATGCAT	1 cut(s)	1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.