Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001677

Physical Location & Seq

Genomic Coordinates Reverse (-)

52017404 .. 52017925

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0408000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATTCATCTCTGGTGATGGATATGTTGTTATTGGTTGTGGTGCCAACTGAGATGGTATTAGATGTGGGTGAGACGGCTTCTGAAGTTGTGCACCTGTCTGGGAAGAAAAGAAAGGTTGAGGAGTACTTTGCCAGGGATGGGAAACAGTACTTGGCTCTCCCTGCTCCGGCGCTTCAGTTTGATGATTATGTTGCGTTGGCTTTGAAGCATAAACAAGGAAAGCTTCTTATCTCTCCAGAGAAGAAGAAGCTGGGTAAACCCAAGGGTAGCAAGAACAAATCTAAACTACCTCATCAGACTCTGGAACCTCTTTCGGGGGAGATTGAAGTTGCAAAGGAGGTGGAGTCTTCTGCTTTGGTTAAAATGTTGATGCCTAATGAAGGAGTGGAGGATCAGGAGTCACTCTCTACTCCTACTGTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

142

Amino Acids

15.58

Weight (kDa)

5.95

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13060 AT3G13060 AT3G13060 AT3G13060 AT3G13060 AT3G13060
fragaria_vesca	FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470
malus_domestica	MD09G1168700.v1.1 MD17G1158000.v1.1
prunus_persica	Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1
pyrus_communis	pycom09g08640 pycom17g15140
rosa_chinensis	RchiOBHm_Chr2g0148601
rosa_laevigata	RLG00000020354
rosa_multiflora	Rmu_sc0000048.1_g000023
rosa_roxburghii	Rroxscaffold_2G00098600
rosa_rugosa	Rorug02G0407700 Rorug02G0407700 Rorug02G0407800 Rorug02G0407900 Rorug02G0407900 Rorug02G0408000
rosa_samantha	Rh2AG466400 Rh2BG479500 Rh2CG452900 Rh2DG488300
rosa_wichuraiana	Rw2G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	402
AcuI	CTGAAG	2 cut(s)	105, 161
AfaI	GTAC	2 cut(s)	128, 152
AfiI	CCNNNNNNNGG	4 cut(s)	141, 169, 317, 383
AgsI	TTSAA	2 cut(s)	208, 329
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	226, 253
AluI	AGCT	2 cut(s)	226, 253
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	304
ApaLI	GTGCAC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	28, 83
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	3 cut(s)	13, 49, 134
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	176
BmcAI	AGTACT	2 cut(s)	128, 152
Bme1390I	CCNGG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	45, 309
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	135, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 169, 317, 383
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	135, 264
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	4 cut(s)	141, 169, 317, 383
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	141, 169, 317, 383
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	45, 309
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	135, 264
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	150, 421
BstDEI	CTNAG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	127, 151
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviJI	RGCY	5 cut(s)	80, 158, 203, 226, 253
CviKI_1	RGCY	5 cut(s)	80, 158, 203, 226, 253
CviQI	GTAC	2 cut(s)	127, 151
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	105, 161
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	68
FaiI	YATR	3 cut(s)	26, 192, 213
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FokI	GGATG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	176
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	4 cut(s)	5, 301, 347, 401
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	28, 83
Hpy166II	GTNNAC	2 cut(s)	94, 260
Hpy188I	TCNGA	2 cut(s)	85, 300
Hpy188III	TCNNGA	3 cut(s)	239, 305, 398
Hpy8I	GTNNAC	2 cut(s)	94, 260
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	150, 421
HpyCH4V	TGCA	2 cut(s)	94, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	172
LweI	GCATC	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	4 cut(s)	118, 256, 259, 342
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	3 cut(s)	295, 356, 410
MnlI	CCTC	5 cut(s)	115, 303, 321, 334, 385
MseI	TTAA	2 cut(s)	363, 427
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	45, 309
NmuCI	GTSAC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	5
PleI	GAGTC	3 cut(s)	295, 355, 409
PpsI	GAGTC	3 cut(s)	295, 355, 409
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	45, 309
PstNI	CAGNNNCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	128, 152
RsaNI	GTAC	2 cut(s)	127, 151
SaqAI	TTAA	2 cut(s)	363, 427
Sau3AI	GATC	1 cut(s)	394
ScaI	AGTACT	2 cut(s)	128, 152
SchI	GAGTC	3 cut(s)	295, 356, 410
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	99, 120, 228, 255, 295, 313, 345
SfaNI	GCATC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	150, 421
TatI	WGTACW	2 cut(s)	126, 150
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	363, 427
Tru9I	TTAA	2 cut(s)	363, 427
TseFI	GTSAC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	1 cut(s)	396
VneI	GTGCAC	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	381
ZrmI	AGTACT	2 cut(s)	128, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.