RchiOBHm_Chr2g0148601

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001677
Physical Location & Seq
Forward (+)
66366611 .. 66372566
5956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51816

Sequence Viewer

Length: 1905 bp
ATGGCGGCAAACCAACCGCAGGGTCCAGATCGTACATCTGAAGAGAAACCTGCTGAACCTGATAGCATGAAGGAGCAGGATGGTGGCTCAATAGGTCATCCAAGGGAAGCAGCAGCTCAACCGGGTTCTTTTGGCGTAGGTGGAGATCACACCGTTTTCCCTCCTAATGTGTATTCCCCTCAGGCGCAGCAGACCTTCTACTATAGAGGTTATGAAAATGGAACTGGTGAGTGGGACGAGTATCCTCCATACCTGAATTCTGAAGGATTGGAGATTACGTCTCCTGGTGTCTACAATGAGAATCATCCATCTCTTGTCTATCATTCTGGTTATAGCTACAATCCGCAAATGCCATATGGGCCCTACTCTCCGGTCACAACACCTATGCCTTCTGGAGGGGGAGATGGACAGTTATATTCCCCCCAGCAATTTCCATTTTCAGGGCCACCTTATTATCAGCAGCTAGGACCTCCTAGCATGCCATACATTACTTCACCGACTCCAGTTTCACAGCCAGACCTCACCACCCTAGTTAGTATTGATCAACAAGGTGACAGCATGCTTTTTGGGCCAAGGCCTGGTTATTCTCCTGTGGGATCTTATGGTAGGGGCAGTTTTCCTGGAAATCCAGGTAGTTTTGGTTATCATGATATGCAGCAAGGATTTGATGGGTTGAGATCTGGAGGACTCTGGTCAGACTGGTCAAAACCCTCGGACAGGCAGAGGTCTTATACTCCCTTGTCGCCAGCAGTATCTCCACAGCCAATTGGCCCACTTGGCTCATTTGGGCAGAATGTTGGAATGGGTTCTCAACACCAAAGGTCTTTGTATGGATATGGATCTGGTTCAAACTCTTATAACAGAGGCTACATTCCCAGTGGTTTTAATCAGGGCTCCAGCCTTGGAAGTGCATCCTTTTCCAGTTTTGGAGCTAACAACAGAGGCTTTCTATCATTAGAAAATAGCAAGAGGCATGTGAGAGGCACCGGTCCAATATGCAGTTGCAATGCTCCCCTTGATATTCTTTGTGAGCAGAACCGAGGACCAAGGGCGTCAAAGCCAAAGGCACAACTCATTGCTGATAGCGCTGTGGAGAACACTAAACTTAATACACCTACAACCAAGGTTCATGACGAAACATACAACCGGCCAGATTTTGTGACAGAGTACAAAGATGCTAAGTTCTTTATCATCAAATCTTACAGTGAAGATAATGTTCACAAGAGTATCAAATACGGTGTCTGGGCAAGCACACCAAATGGCAACAGAAAGTTAGATGCTGCATATCATGAAGCTACGGAGAAGCATGATAGCTGCCCAATTTTTCTCTTGTTTTCGGTGAATGCTAGTGCTCAGTTCTGTGGGGTGGCTGAAATGGTTGGACCTGTTGATTTTGACAAGAGTGTGGATTACTGGCAGCAAGACAAATGGAGCGGGCAGTTCCCTGTCAAGTGGCATGTTATTAAGGATGTCCCAAATAGTCAGTTTCGTCATATTGTTCTTGAAAATAATGATAACAAGCCAGTAACAAACAGTCGAGATACTCAAGAGGTAAAACTAGAGCAGGGAATTGAGATGTTAATTATTTTCAAGAATTATGAAACGGATATGTCGATTCTAGATGATTTTGATTTTTATGAAGATCGTCAGAAGGCAATGCAAGAGCGGAAGGCCAGACAGCAAGCCAGTCTGATTGCTGTAGGTGTAGTCGGAGAAAATGAGCACAGAAGTCCTGTTCAAATTCCCACTGATTTCATCAAGCACATGTCGAAGAGTTTTGCTCAAGTGGTCCGCTTGGATGAGGGTACTAAAGAAGCTACTGCTGCTTCTGATGGCCCCATTGGCACTAGGGTGAAACTTGAAGATGCAATTCCGGTGTCCGTCTCTTCTGCTCAGATCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

634

Amino Acids

69.64

Weight (kDa)

5.44

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 393 - 531 2.2e-49 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 983
AccB7I CCANNNNNTGG 1 cut(s) 578
AccBSI CCGCTC 2 cut(s) 1434, 1666
AccI GTMKAC 1 cut(s) 291
AciI CCGC 6 cut(s) 5, 17, 344, 1434, 1666, 1792
AclWI GGATC 2 cut(s) 604, 847
AcoI YGGCCR 1 cut(s) 1148
AcsI RAATTY 2 cut(s) 256, 1740
AcuI CTGAAG 2 cut(s) 60, 282
AcyI GRCGYC 1 cut(s) 1052
AfaI GTAC 3 cut(s) 34, 1169, 1807
AfeI AGCGCT 1 cut(s) 1087
AfiI CCNNNNNNNGG 5 cut(s) 19, 395, 440, 578, 717
AflIII ACRYGT 1 cut(s) 1764
AgeI ACCGGT 1 cut(s) 986
AgsI TTSAA 5 cut(s) 849, 1505, 1591, 1739, 1862
AjnI CCWGG 4 cut(s) 283, 577, 619, 628
AleI CACNNNNGTG 1 cut(s) 1850
AluBI AGCT 7 cut(s) 116, 336, 463, 932, 1295, 1314, 1817
AluI AGCT 7 cut(s) 116, 336, 463, 932, 1295, 1314, 1817
Alw21I GWGCWC 2 cut(s) 1354, 1725
Alw26I GTCTC 2 cut(s) 285, 1888
AlwI GGATC 2 cut(s) 604, 847
Aor51HI AGCGCT 1 cut(s) 1087
AoxI GGCC 8 cut(s) 359, 443, 569, 575, 769, 1148, 1671, 1834
ApaI GGGCCC 1 cut(s) 363
ApeKI GCWGC 9 cut(s) 110, 113, 187, 460, 655, 1280, 1314, 1417, 1823
ApoI RAATTY 2 cut(s) 256, 1740
ArsI GACNNNNNNTTYG 2 cut(s) 1224, 1256
AsiGI ACCGGT 1 cut(s) 986
Asp700I GAANNNNTTC 1 cut(s) 805
AspLEI GCGC 2 cut(s) 187, 1088
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 6 cut(s) 239, 486, 514, 563, 1351, 1864
AvaII GGWCC 6 cut(s) 23, 467, 989, 1043, 1382, 1789
AxyI CCTNAGG 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 363
BaeI ACNNNNGTAYC 2 cut(s) 1210, 1243
BanI GGYRCC 1 cut(s) 983
BanII GRGCYC 2 cut(s) 363, 896
Bbv12I GWGCWC 2 cut(s) 1354, 1725
BbvI GCAGC 9 cut(s) 122, 125, 199, 472, 667, 1267, 1301, 1429, 1810
BccI CCATC 5 cut(s) 74, 316, 398, 662, 1826
BciT130I CCWGG 4 cut(s) 285, 579, 621, 630
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 285, 1888
BfaI CTAG 7 cut(s) 464, 474, 530, 1347, 1559, 1619, 1848
BfmI CTRYAG 2 cut(s) 202, 1698
BfoI RGCGCY 1 cut(s) 1089
BfuAI ACCTGC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 252
BglI GCCNNNNNGGC 3 cut(s) 358, 777, 1842
BglII AGATCT 1 cut(s) 677
Bme1390I CCNGG 5 cut(s) 123, 285, 579, 621, 630
Bme18I GGWCC 6 cut(s) 23, 467, 989, 1043, 1382, 1789
BmiI GGNNCC 5 cut(s) 24, 361, 895, 985, 1837
BmrFI CCNGG 5 cut(s) 123, 285, 579, 621, 630
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 4 cut(s) 920, 1165, 1267, 1855
BmuI ACTGGG 1 cut(s) 870
BoxI GACNNNNGTC 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 1765, 1797
BpmI CTGGAG 4 cut(s) 414, 486, 702, 880
BpuEI CTTGAG 2 cut(s) 1530, 1767
BpuMI CCSGG 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 1052
BsaJI CCNNGG 7 cut(s) 101, 572, 711, 901, 1039, 1046, 1122
BsaWI WCCGGW 3 cut(s) 370, 986, 1873
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 395, 440, 578, 717
Bse118I RCCGGY 2 cut(s) 986, 1146
Bse1I ACTGG 8 cut(s) 229, 503, 704, 876, 921, 1418, 1523, 1686
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 3 cut(s) 1012, 1074, 1662
Bse8I GATNNNNATC 1 cut(s) 838
BseBI CCWGG 4 cut(s) 285, 579, 621, 630
BseDI CCNNGG 7 cut(s) 101, 572, 711, 901, 1039, 1046, 1122
BseGI GGATG 6 cut(s) 85, 97, 304, 911, 1474, 1804
BseJI GATNNNNATC 1 cut(s) 838
BseLI CCNNNNNNNGG 5 cut(s) 19, 395, 440, 578, 717
BseMI GCAATG 3 cut(s) 1012, 1074, 1662
BseMII CTCAG 2 cut(s) 194, 1367
BseNI ACTGG 8 cut(s) 229, 503, 704, 876, 921, 1418, 1523, 1686
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 9 cut(s) 122, 125, 199, 472, 667, 1267, 1301, 1429, 1810
BseYI CCCAGC 1 cut(s) 423
BshFI GGCC 8 cut(s) 361, 445, 571, 577, 771, 1150, 1673, 1836
BshNI GGYRCC 1 cut(s) 983
BshTI ACCGGT 1 cut(s) 986
BsiHKAI GWGCWC 2 cut(s) 1354, 1725
BsiSI CCGG 5 cut(s) 122, 371, 987, 1147, 1874
BslFI GGGAC 2 cut(s) 248, 1457
BslI CCNNNNNNNGG 5 cut(s) 19, 395, 440, 578, 717
BsmAI GTCTC 2 cut(s) 285, 1888
BsmBI CGTCTC 2 cut(s) 285, 1888
BsmFI GGGAC 2 cut(s) 248, 1457
BsmI GAATGC 1 cut(s) 1348
BsnI GGCC 8 cut(s) 361, 445, 571, 577, 771, 1150, 1673, 1836
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 4 cut(s) 363, 896, 1354, 1725
Bsp143I GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
BspACI CCGC 6 cut(s) 5, 17, 344, 1434, 1666, 1792
BspANI GGCC 8 cut(s) 361, 445, 571, 577, 771, 1150, 1673, 1836
BspCNI CTCAG 2 cut(s) 193, 1366
BspHI TCATGA 3 cut(s) 646, 1129, 1288
BspLI GGNNCC 5 cut(s) 24, 361, 895, 985, 1837
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 2 cut(s) 604, 847
BspT107I GGYRCC 1 cut(s) 983
BsrBI CCGCTC 2 cut(s) 1434, 1666
BsrDI GCAATG 3 cut(s) 1012, 1074, 1662
BsrFI RCCGGY 2 cut(s) 986, 1146
BsrI ACTGG 8 cut(s) 229, 503, 704, 876, 921, 1418, 1523, 1686
BssAI RCCGGY 2 cut(s) 986, 1146
BssECI CCNNGG 7 cut(s) 101, 572, 711, 901, 1039, 1046, 1122
BssMI GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
BssNI GRCGYC 1 cut(s) 1052
BssT1I CCWWGG 5 cut(s) 101, 572, 901, 1046, 1122
Bst2UI CCWGG 4 cut(s) 285, 579, 621, 630
Bst4CI ACNGT 5 cut(s) 154, 411, 1205, 1238, 1535
Bst6I CTCTTC 3 cut(s) 36, 1766, 1891
BstACI GRCGYC 1 cut(s) 1052
BstC8I GCNNGC 6 cut(s) 479, 560, 747, 1249, 1436, 1683
BstDEI CTNAG 4 cut(s) 180, 1179, 1353, 1893
BstENI CCTNNNNNAGG 2 cut(s) 393, 715
BstF5I GGATG 6 cut(s) 85, 97, 304, 911, 1474, 1804
BstH2I RGCGCY 1 cut(s) 1089
BstHHI GCGC 2 cut(s) 187, 1088
BstKTI GATC 8 cut(s) 31, 148, 544, 599, 680, 842, 1645, 1899
BstMAI GTCTC 2 cut(s) 285, 1888
BstMBI GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
BstMWI GCNNNNNNNGC 6 cut(s) 358, 568, 777, 1085, 1823, 1842
BstNI CCWGG 4 cut(s) 285, 579, 621, 630
BstNSI RCATGY 5 cut(s) 481, 562, 977, 1460, 1768
BstPAI GACNNNNGTC 1 cut(s) 691
BstSCI CCNGG 5 cut(s) 121, 283, 577, 619, 628
BstSFI CTRYAG 2 cut(s) 202, 1698
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 9 cut(s) 122, 125, 199, 472, 667, 1267, 1301, 1429, 1810
BstX2I RGATCY 3 cut(s) 596, 677, 839
BstYI RGATCY 3 cut(s) 596, 677, 839
Bsu36I CCTNAGG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 8 cut(s) 361, 445, 571, 577, 771, 1150, 1673, 1836
BtsCI GGATG 6 cut(s) 85, 97, 304, 911, 1474, 1804
BtsIMutI CAGTG 3 cut(s) 883, 1210, 1746
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 6 cut(s) 479, 560, 747, 1249, 1436, 1683
CciI TCATGA 3 cut(s) 646, 1129, 1288
CfoI GCGC 2 cut(s) 187, 1088
Cfr10I RCCGGY 2 cut(s) 986, 1146
CseI GACGC 1 cut(s) 1041
Csp6I GTAC 3 cut(s) 33, 1168, 1806
CspAI ACCGGT 1 cut(s) 986
CviQI GTAC 3 cut(s) 33, 1168, 1806
DdeI CTNAG 4 cut(s) 180, 1179, 1353, 1893
DpnI GATC 8 cut(s) 30, 147, 543, 598, 679, 841, 1644, 1898
DpnII GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
EaeI YGGCCR 1 cut(s) 1148
Eam1104I CTCTTC 3 cut(s) 36, 1766, 1891
EarI CTCTTC 3 cut(s) 36, 1766, 1891
Eco130I CCWWGG 5 cut(s) 101, 572, 901, 1046, 1122
Eco147I AGGCCT 1 cut(s) 577
Eco24I GRGCYC 2 cut(s) 363, 896
Eco47I GGWCC 6 cut(s) 23, 467, 989, 1043, 1382, 1789
Eco47III AGCGCT 1 cut(s) 1087
Eco57I CTGAAG 2 cut(s) 60, 282
Eco81I CCTNAGG 1 cut(s) 180
EcoNI CCTNNNNNAGG 2 cut(s) 393, 715
EcoO109I RGGNCCY 2 cut(s) 360, 467
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 4 cut(s) 283, 577, 619, 628
EcoT14I CCWWGG 5 cut(s) 101, 572, 901, 1046, 1122
EcoT38I GRGCYC 2 cut(s) 363, 896
ErhI CCWWGG 5 cut(s) 101, 572, 901, 1046, 1122
Esp3I CGTCTC 2 cut(s) 285, 1888
FaqI GGGAC 2 cut(s) 248, 1457
FauI CCCGC 1 cut(s) 1427
FauNDI CATATG 1 cut(s) 355
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 291
FokI GGATG 6 cut(s) 84, 92, 291, 898, 1481, 1811
FriOI GRGCYC 2 cut(s) 363, 896
FspBI CTAG 7 cut(s) 464, 474, 530, 1347, 1559, 1619, 1848
GlaI GCGC 2 cut(s) 186, 1087
GsaI CCCAGC 1 cut(s) 427
GsuI CTGGAG 4 cut(s) 414, 486, 702, 880
HaeII RGCGCY 1 cut(s) 1089
HaeIII GGCC 8 cut(s) 361, 445, 571, 577, 771, 1150, 1673, 1836
HapII CCGG 5 cut(s) 122, 371, 987, 1147, 1874
HgaI GACGC 1 cut(s) 1041
HhaI GCGC 2 cut(s) 187, 1088
Hin1I GRCGYC 1 cut(s) 1052
Hin6I GCGC 2 cut(s) 185, 1086
HinP1I GCGC 2 cut(s) 185, 1086
HinfI GANTC 4 cut(s) 301, 499, 687, 1615
HpaII CCGG 5 cut(s) 122, 371, 987, 1147, 1874
HphI GGTGA 6 cut(s) 239, 486, 514, 563, 1351, 1864
Hpy166II GTNNAC 2 cut(s) 292, 1219
Hpy188I TCNGA 9 cut(s) 40, 262, 697, 715, 1650, 1692, 1712, 1831, 1896
Hpy8I GTNNAC 2 cut(s) 292, 1219
HpyAV CCTTC 6 cut(s) 64, 205, 257, 399, 1645, 1663
HpyCH4III ACNGT 5 cut(s) 154, 411, 1205, 1238, 1535
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 7 cut(s) 655, 911, 999, 1005, 1283, 1660, 1868
HpyF10VI GCNNNNNNNGC 6 cut(s) 358, 568, 777, 1085, 1823, 1842
HpyF3I CTNAG 4 cut(s) 180, 1179, 1353, 1893
HpySE526I ACGT 1 cut(s) 278
Hsp92I GRCGYC 1 cut(s) 1052
HspAI GCGC 2 cut(s) 185, 1086
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
LmnI GCTCC 5 cut(s) 73, 899, 929, 1015, 1431
Lsp1109I GCAGC 9 cut(s) 122, 125, 199, 472, 667, 1267, 1301, 1429, 1810
LweI GCATC 4 cut(s) 920, 1165, 1267, 1855
MaeI CTAG 7 cut(s) 464, 474, 530, 1347, 1559, 1619, 1848
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 4 cut(s) 373, 551, 1159, 1525
MalI GATC 8 cut(s) 30, 147, 543, 598, 679, 841, 1644, 1898
MbiI CCGCTC 2 cut(s) 1434, 1666
MboI GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
MboII GAAGA 6 cut(s) 53, 1220, 1652, 1783, 1874, 1878
MfeI CAATTG 1 cut(s) 765
MflI RGATCY 3 cut(s) 596, 677, 839
MhlI GDGCHC 4 cut(s) 363, 896, 1354, 1725
MluCI AATT 9 cut(s) 256, 428, 765, 1320, 1569, 1581, 1594, 1740, 1869
MlyI GAGTC 2 cut(s) 493, 681
MmeI TCCRAC 3 cut(s) 778, 1360, 1690
MroXI GAANNNNTTC 1 cut(s) 805
MseI TTAA 4 cut(s) 885, 1107, 1464, 1580
MslI CAYNNNNRTG 1 cut(s) 1850
MspI CCGG 5 cut(s) 122, 371, 987, 1147, 1874
MspR9I CCNGG 5 cut(s) 123, 285, 579, 621, 630
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 1348
MvaI CCWGG 4 cut(s) 285, 579, 621, 630
MwoI GCNNNNNNNGC 6 cut(s) 358, 568, 777, 1085, 1823, 1842
NciI CCSGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 355
NdeII GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
NlaIV GGNNCC 5 cut(s) 24, 361, 895, 985, 1837
NmuCI GTSAC 3 cut(s) 373, 551, 1159
NspI RCATGY 5 cut(s) 481, 562, 977, 1460, 1768
OliI CACNNNNGTG 1 cut(s) 1850
PaeI GCATGC 2 cut(s) 481, 562
PagI TCATGA 3 cut(s) 646, 1129, 1288
PceI AGGCCT 1 cut(s) 577
PciI ACATGT 1 cut(s) 1764
PcsI WCGNNNNNNNCGW 1 cut(s) 1610
PctI GAATGC 1 cut(s) 1348
PdmI GAANNNNTTC 1 cut(s) 805
PfeI GAWTC 2 cut(s) 301, 1615
PflMI CCANNNNNTGG 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 619
PinAI ACCGGT 1 cut(s) 986
PleI GAGTC 2 cut(s) 493, 681
PpsI GAGTC 2 cut(s) 493, 681
PpuMI RGGWCCY 1 cut(s) 467
PscI ACATGT 1 cut(s) 1764
PshAI GACNNNNGTC 1 cut(s) 691
PsiI TTATAA 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 4 cut(s) 283, 577, 619, 628
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 4 cut(s) 283, 577, 619, 628
PspN4I GGNNCC 5 cut(s) 24, 361, 895, 985, 1837
PspOMI GGGCCC 1 cut(s) 359
PspPPI RGGWCCY 1 cut(s) 467
PsuI RGATCY 3 cut(s) 596, 677, 839
RsaI GTAC 3 cut(s) 34, 1169, 1807
RsaNI GTAC 3 cut(s) 33, 1168, 1806
RseI CAYNNNNRTG 1 cut(s) 1850
SaqAI TTAA 4 cut(s) 885, 1107, 1464, 1580
Sau3AI GATC 8 cut(s) 28, 145, 541, 596, 677, 839, 1642, 1896
SchI GAGTC 2 cut(s) 493, 681
ScrFI CCNGG 5 cut(s) 123, 285, 579, 621, 630
SduI GDGCHC 4 cut(s) 363, 896, 1354, 1725
SfaNI GCATC 4 cut(s) 920, 1165, 1267, 1855
SfcI CTRYAG 2 cut(s) 202, 1698
SinI GGWCC 6 cut(s) 23, 467, 989, 1043, 1382, 1789
SmiMI CAYNNNNRTG 1 cut(s) 1850
SmlI CTYRAG 2 cut(s) 1545, 1782
SmoI CTYRAG 2 cut(s) 1545, 1782
SphI GCATGC 2 cut(s) 481, 562
Sse9I AATT 9 cut(s) 256, 428, 765, 1320, 1569, 1581, 1594, 1740, 1869
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 6 cut(s) 5, 17, 344, 1434, 1666, 1792
SspMI CTAG 7 cut(s) 464, 474, 530, 1347, 1559, 1619, 1848
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 5 cut(s) 121, 283, 577, 619, 628
StyI CCWWGG 5 cut(s) 101, 572, 901, 1046, 1122
TaaI ACNGT 5 cut(s) 154, 411, 1205, 1238, 1535
TaiI ACGT 1 cut(s) 281
TaqI TCGA 3 cut(s) 1537, 1613, 1769
TasI AATT 9 cut(s) 256, 428, 765, 1320, 1569, 1581, 1594, 1740, 1869
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 301, 1615
Tru1I TTAA 4 cut(s) 885, 1107, 1464, 1580
Tru9I TTAA 4 cut(s) 885, 1107, 1464, 1580
TscAI CASTG 3 cut(s) 883, 1210, 1753
TseFI GTSAC 3 cut(s) 373, 551, 1159
TseI GCWGC 9 cut(s) 110, 113, 187, 460, 655, 1280, 1314, 1417, 1823
Tsp45I GTSAC 3 cut(s) 373, 551, 1159
TspDTI ATGAA 7 cut(s) 83, 228, 1118, 1305, 1614, 1653, 1744
TspGWI ACGGA 3 cut(s) 1313, 1619, 1870
TspRI CASTG 3 cut(s) 883, 1210, 1753
Van91I CCANNNNNTGG 1 cut(s) 578
VpaK11BI GGWCC 6 cut(s) 23, 467, 989, 1043, 1382, 1789
XagI CCTNNNNNAGG 2 cut(s) 393, 715
XapI RAATTY 2 cut(s) 256, 1740
XbaI TCTAGA 1 cut(s) 1618
XceI RCATGY 5 cut(s) 481, 562, 977, 1460, 1768
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 805
XspI CTAG 7 cut(s) 464, 474, 530, 1347, 1559, 1619, 1848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.