Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001677

Physical Location & Seq

Genomic Coordinates Reverse (-)

51990535 .. 51992156

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0407700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCCAAAGTTTGTTGCTCCATTGAGATGGAACCTAGGACCTTGAGTCAAGTACAACTCAACCATGCTAGGGAAATGGCTGCAGATGTGGTTCAGAAAATGGAATCAAATGAAGCCTCAGCTACATTCAGTGAGGGATTGAGACCGATTGGTTCAGAGACACAGGTGGACCATGTAAATATTGCTGAAGGGGGTGAAGAACCACAGAATAAGCTAATTCTGGAGTCGGAGGAGTCTCAACTGTATGAAAGACCATGCCAATGCTTGTGTGCTGCTGCCAATATTGAAATCCCTGATCAAGAAAAGCTTAAGGAACCCCTCTCGGCCCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

111

Amino Acids

12.26

Weight (kDa)

4.49

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13060 AT3G13060 AT3G13060 AT3G13060 AT3G13060 AT3G13060
fragaria_vesca	FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470 FvH4_6g36470
malus_domestica	MD09G1168700.v1.1 MD17G1158000.v1.1
prunus_persica	Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1 Prupe.3G027100_v2.0.a1
pyrus_communis	pycom09g08640 pycom17g15140
rosa_chinensis	RchiOBHm_Chr2g0148601
rosa_laevigata	RLG00000020354
rosa_multiflora	Rmu_sc0000048.1_g000023
rosa_roxburghii	Rroxscaffold_2G00098600
rosa_rugosa	Rorug02G0407700 Rorug02G0407700 Rorug02G0407800 Rorug02G0407900 Rorug02G0407900 Rorug02G0408000
rosa_samantha	Rh2AG466400 Rh2BG479500 Rh2CG452900 Rh2DG488300
rosa_wichuraiana	Rw2G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	287
AhdI	GACNNNNNGTC	1 cut(s)	45
AluBI	AGCT	3 cut(s)	122, 214, 307
AluI	AGCT	3 cut(s)	122, 214, 307
Alw26I	GTCTC	3 cut(s)	136, 152, 240
AoxI	GGCC	2 cut(s)	3, 324
ApeKI	GCWGC	3 cut(s)	80, 272, 275
AspA2I	CCTAGG	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	39, 169, 325
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	39, 169
AvrII	CCTAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	67, 259, 262
BccI	CCATC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	136, 152, 240
BfaI	CTAG	2 cut(s)	36, 69
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	3 cut(s)	81, 273, 276
BlnI	CCTAGG	1 cut(s)	35
BlsI	GCNGC	3 cut(s)	82, 274, 277
Bme18I	GGWCC	2 cut(s)	39, 169
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmgT120I	GGNCC	3 cut(s)	39, 169, 325
BmiI	GGNNCC	3 cut(s)	33, 315, 327
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	67, 259, 262
BshFI	GGCC	2 cut(s)	5, 326
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	3 cut(s)	136, 152, 240
BsnI	GGCC	2 cut(s)	5, 326
Bso31I	GGTCTC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	5, 326
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	33, 315, 327
BspMAI	CTGCAG	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	3 cut(s)	136, 152, 240
BstMBI	GATC	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	67, 259, 262
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	5, 326
BtsIMutI	CAGTG	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	39, 169, 325
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	3 cut(s)	65, 173, 255
CviJI	RGCY	7 cut(s)	5, 80, 116, 122, 214, 307, 326
CviKI_1	RGCY	7 cut(s)	5, 80, 116, 122, 214, 307, 326
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DriI	GACNNNNNGTC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	39, 169
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	68, 176, 258
FaiI	YATR	4 cut(s)	66, 174, 246, 256
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	3 cut(s)	64, 172, 254
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	81, 273, 276
Fsp4HI	GCNGC	3 cut(s)	81, 273, 276
FspBI	CTAG	2 cut(s)	36, 69
GluI	GCNGC	3 cut(s)	81, 273, 276
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	5, 326
Hin1II	CATG	3 cut(s)	68, 176, 258
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	46, 104, 224, 233
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	96, 157, 229
Hpy188III	TCNNGA	2 cut(s)	221, 299
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	68, 176, 258
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	3 cut(s)	149, 206, 306
Lsp1109I	GCAGC	3 cut(s)	67, 259, 262
MaeI	CTAG	2 cut(s)	36, 69
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	55, 233, 242
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	127, 127, 223, 329
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	2 cut(s)	26, 259
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	308
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	3 cut(s)	68, 176, 258
NlaIV	GGNNCC	3 cut(s)	33, 315, 327
NmeAIII	GCCGAG	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	82, 274, 277
PleI	GAGTC	3 cut(s)	54, 232, 241
PpsI	GAGTC	3 cut(s)	54, 232, 241
PpuMI	RGGWCCY	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	33, 315, 327
PspPI	GGNCC	3 cut(s)	39, 169, 325
PspPPI	RGGWCCY	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	26, 259
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	81, 273, 276
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	3 cut(s)	39, 169, 325
SchI	GAGTC	3 cut(s)	55, 233, 242
SetI	ASST	6 cut(s)	37, 44, 124, 168, 216, 309
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	39, 169
SmiMI	CAYNNNNRTG	2 cut(s)	26, 259
SmlI	CTYRAG	2 cut(s)	43, 308
SmoI	CTYRAG	2 cut(s)	43, 308
Sse9I	AATT	1 cut(s)	216
SspI	AATATT	2 cut(s)	181, 283
SspMI	CTAG	2 cut(s)	36, 69
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	243
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	3 cut(s)	80, 272, 275
TspDTI	ATGAA	2 cut(s)	126, 261
TspRI	CASTG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	39, 169
XmaJI	CCTAGG	1 cut(s)	35
XspI	CTAG	2 cut(s)	36, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.