Rw2G038030

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001677
Physical Location & Seq
Forward (+)
62827821 .. 62833659
5839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038030.1

Sequence Viewer

Length: 1953 bp
ATGGCGGCAAACCAACCGCAGGGTCCAGATCGTACATCTGAAGAGAAACCTGCTGAACCTGATAGCATGAAGGAGCAGACTCTTGTAGCAAAAAATGAGAGGTCAATTTCTCCTAATCCTTCTCAGGATGGTGGCTCAATAGGTCATCCAAGGGAAGCAGCAGCTCAACCGGGTTCTTTTGGCGTAGGTGGAGATCACACCGTTTTCCCTCCTAATGTGTATTCCCCTCAGGCGCAGCAGACCTTCTACTATAGAGGTTATGAAAATGGAACTGGTGAGTGGGACGAGTATCCTCCATACCTGAATTCTGAAGGATTGGAGATTACGTCTCCTGGTGTCTACAATGAGAATCATCCATCTCTTGTCTATCATTCTGGTTATAGCTACAATCCGCAAATGCCATATGGGCCCTACTCTCCGGTCACAACACCTATGCCTTCTGGAGGGGGAGATGGACAGTTATATTCCCCCCAGCAATTTCCATTTTCAGGGCCACCTTATTATCAGCAGCTAGGACCTCCTAGCATGCCATACATTACTTCACCGACTCCAGTTTCACAGCCAGACCTCACCACCTTAGTTAGTATTGATCAACAAGGTGACAGCATGCTTTTTGGGCCAAGGCCTGGTTATTCTCCTGTGGGATCTTATGGTAGGGGCAGTTTTCCTGGAAATCCAGGTAGTTTTGGTTATCATGATATGCAGCAAGGATTTGATGGGTTGAGATCTGGAGGACTCTGGTCAGACTGGTCAAAACCCTCGGACAGGCAGAGGTCTTATACTCCCTTGTCGCCAGCAGTATCTCCACAGCCAATTGGCCCACTTGGCTCGTTTGGGCAGAATGTTGGAATGGGTTCTCAACACCAAAGGTCTTTGTATGGATATGGATCTGGTTCAAACTCTTATAACAGAGGCTACATTCCCAGTGGTTTTAATCAGGGCTCCAGCCTTGGAAGTGCATCCTTTTCCAGTTTTGGAGCTAACAACAGAGGCTTTCTATCATTAGAAAACAGCAAGAGGCATGTGAGAGGCACCGGTCCAATATGCAGTTGCAATGCTCCCCTTGATATTCTTTGTGAGCAGAACCGAGGACCAAGGGCGTCAAAGCCAAAGGCACAACTCATTGCTGATAGCGCTGTGGAGAACACTAAACTTAATACACCTACTACCAAGGTTCATGACGAAACATACAACCGGCCAGATTTTGTGACAGAGTACAAAGATGCTAAGTTCTTTATCATCAAATCTTACAGTGAAGATAATGTTCACAAGAGTATCAAATACGGTGTCTGGGCAAGCACACCAAATGGCAACAGAAAGTTAGATGCTGCGTATCATGAAGCTACGGAGAAGCATGATAGCTGCCCAATTTTTCTCTTGTTTTCGGTGAATGCTAGTGCTCAGTTCTGTGGGGTGGCTGAAATGGTTGGACCTGTTGATTTTGACAAGAGTGTGGATTACTGGCAGCAAGACAAATGGAGCGGGCAGTTCCCTGTCAAGTGGCATGTTATTAAGGATGTCCCAAATAGTCAGTTTCGTCATATTGTTCTTGAAAATAATGATAACAAGCCAGTAACTAACAGTCGAGATACTCAAGAGGTAAAACTAGAGCAGGGAATTGAGATGTTAGTTATTTTCAAGAATTATGAAACGGATATGTCGATTCTAGATGATTTTGATTTTTATGAAGATCGTCAGAAGGCAATGCAAGAGCGGAAGGCCAGACAGCAAGCCAGCCTGATTGCTGTAGGTGTAGTCGGAGAAAATGAGCACAGAAGTCCTGTTCAAATTCCCACTGATTTCATCAAGCACATGTCGAAGAGTTTTGCTCAAGTGGTCCGCTTGGATGAGGGTACTAAAGAAGCTACTGCTGCTTCTGATGGCCCCATTGGCACTAGGGTGAAACTTGAAGATGCAATTCCGGTGTCCGTCTCTTCTGCTCAGATCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

650

Amino Acids

71.35

Weight (kDa)

5.51

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 409 - 547 2.2e-49 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 906
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 1031
AccB7I CCANNNNNTGG 1 cut(s) 626
AccBSI CCGCTC 2 cut(s) 1482, 1714
AccI GTMKAC 1 cut(s) 339
AciI CCGC 6 cut(s) 5, 17, 392, 1482, 1714, 1840
AclWI GGATC 2 cut(s) 652, 895
AcoI YGGCCR 1 cut(s) 1196
AcsI RAATTY 2 cut(s) 304, 1788
AcuI CTGAAG 2 cut(s) 60, 330
AcyI GRCGYC 1 cut(s) 1100
AfaI GTAC 3 cut(s) 34, 1217, 1855
AfeI AGCGCT 1 cut(s) 1135
AfiI CCNNNNNNNGG 5 cut(s) 19, 443, 488, 626, 765
AflIII ACRYGT 1 cut(s) 1812
AgeI ACCGGT 1 cut(s) 1034
AgsI TTSAA 5 cut(s) 897, 1553, 1639, 1787, 1910
AjnI CCWGG 4 cut(s) 331, 625, 667, 676
AleI CACNNNNGTG 1 cut(s) 1898
AluBI AGCT 7 cut(s) 164, 384, 511, 980, 1343, 1362, 1865
AluI AGCT 7 cut(s) 164, 384, 511, 980, 1343, 1362, 1865
Alw21I GWGCWC 2 cut(s) 1402, 1773
Alw26I GTCTC 2 cut(s) 333, 1936
AlwI GGATC 2 cut(s) 652, 895
Aor51HI AGCGCT 1 cut(s) 1135
AoxI GGCC 8 cut(s) 407, 491, 617, 623, 817, 1196, 1719, 1882
ApaI GGGCCC 1 cut(s) 411
ApeKI GCWGC 9 cut(s) 158, 161, 235, 508, 703, 1328, 1362, 1465, 1871
ApoI RAATTY 2 cut(s) 304, 1788
ArsI GACNNNNNNTTYG 2 cut(s) 1272, 1304
AsiGI ACCGGT 1 cut(s) 1034
Asp700I GAANNNNTTC 1 cut(s) 853
AspLEI GCGC 2 cut(s) 235, 1136
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 6 cut(s) 287, 534, 562, 611, 1399, 1912
AvaII GGWCC 6 cut(s) 23, 515, 1037, 1091, 1430, 1837
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 411
BaeI ACNNNNGTAYC 2 cut(s) 1258, 1291
BanI GGYRCC 1 cut(s) 1031
BanII GRGCYC 2 cut(s) 411, 944
Bbv12I GWGCWC 2 cut(s) 1402, 1773
BbvI GCAGC 9 cut(s) 170, 173, 247, 520, 715, 1315, 1349, 1477, 1858
BccI CCATC 5 cut(s) 122, 364, 446, 710, 1874
BciT130I CCWGG 4 cut(s) 333, 627, 669, 678
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 333, 1936
BfaI CTAG 6 cut(s) 512, 522, 1395, 1607, 1667, 1896
BfmI CTRYAG 2 cut(s) 250, 1746
BfoI RGCGCY 1 cut(s) 1137
BfuAI ACCTGC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 300
BglI GCCNNNNNGGC 3 cut(s) 406, 825, 1890
BglII AGATCT 1 cut(s) 725
Bme1390I CCNGG 5 cut(s) 171, 333, 627, 669, 678
Bme18I GGWCC 6 cut(s) 23, 515, 1037, 1091, 1430, 1837
BmiI GGNNCC 5 cut(s) 24, 409, 943, 1033, 1885
BmrFI CCNGG 5 cut(s) 171, 333, 627, 669, 678
BmrI ACTGGG 1 cut(s) 918
BmsI GCATC 4 cut(s) 968, 1213, 1315, 1903
BmuI ACTGGG 1 cut(s) 918
BoxI GACNNNNGTC 1 cut(s) 739
BplI GAGNNNNNCTC 2 cut(s) 1813, 1845
BpmI CTGGAG 4 cut(s) 462, 534, 750, 928
BpuEI CTTGAG 2 cut(s) 1578, 1815
BpuMI CCSGG 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 886
BsaHI GRCGYC 1 cut(s) 1100
BsaJI CCNNGG 7 cut(s) 149, 620, 759, 949, 1087, 1094, 1170
BsaWI WCCGGW 3 cut(s) 418, 1034, 1921
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 443, 488, 626, 765
Bse118I RCCGGY 2 cut(s) 1034, 1194
Bse1I ACTGG 7 cut(s) 277, 551, 752, 924, 969, 1466, 1571
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 3 cut(s) 1060, 1122, 1710
Bse8I GATNNNNATC 1 cut(s) 886
BseBI CCWGG 4 cut(s) 333, 627, 669, 678
BseDI CCNNGG 7 cut(s) 149, 620, 759, 949, 1087, 1094, 1170
BseGI GGATG 6 cut(s) 133, 145, 352, 959, 1522, 1852
BseJI GATNNNNATC 1 cut(s) 886
BseLI CCNNNNNNNGG 5 cut(s) 19, 443, 488, 626, 765
BseMI GCAATG 3 cut(s) 1060, 1122, 1710
BseMII CTCAG 3 cut(s) 137, 242, 1415
BseNI ACTGG 7 cut(s) 277, 551, 752, 924, 969, 1466, 1571
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 9 cut(s) 170, 173, 247, 520, 715, 1315, 1349, 1477, 1858
BseYI CCCAGC 1 cut(s) 471
BshFI GGCC 8 cut(s) 409, 493, 619, 625, 819, 1198, 1721, 1884
BshNI GGYRCC 1 cut(s) 1031
BshTI ACCGGT 1 cut(s) 1034
BsiHKAI GWGCWC 2 cut(s) 1402, 1773
BsiSI CCGG 5 cut(s) 170, 419, 1035, 1195, 1922
BslFI GGGAC 2 cut(s) 296, 1505
BslI CCNNNNNNNGG 5 cut(s) 19, 443, 488, 626, 765
BsmAI GTCTC 2 cut(s) 333, 1936
BsmBI CGTCTC 2 cut(s) 333, 1936
BsmFI GGGAC 2 cut(s) 296, 1505
BsmI GAATGC 1 cut(s) 1396
BsnI GGCC 8 cut(s) 409, 493, 619, 625, 819, 1198, 1721, 1884
Bsp120I GGGCCC 1 cut(s) 407
Bsp1286I GDGCHC 4 cut(s) 411, 944, 1402, 1773
Bsp143I GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
BspACI CCGC 6 cut(s) 5, 17, 392, 1482, 1714, 1840
BspANI GGCC 8 cut(s) 409, 493, 619, 625, 819, 1198, 1721, 1884
BspCNI CTCAG 3 cut(s) 136, 241, 1414
BspHI TCATGA 3 cut(s) 694, 1177, 1336
BspLI GGNNCC 5 cut(s) 24, 409, 943, 1033, 1885
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 2 cut(s) 652, 895
BspT107I GGYRCC 1 cut(s) 1031
BsrBI CCGCTC 2 cut(s) 1482, 1714
BsrDI GCAATG 3 cut(s) 1060, 1122, 1710
BsrFI RCCGGY 2 cut(s) 1034, 1194
BsrI ACTGG 7 cut(s) 277, 551, 752, 924, 969, 1466, 1571
BssAI RCCGGY 2 cut(s) 1034, 1194
BssECI CCNNGG 7 cut(s) 149, 620, 759, 949, 1087, 1094, 1170
BssMI GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
BssNI GRCGYC 1 cut(s) 1100
BssT1I CCWWGG 5 cut(s) 149, 620, 949, 1094, 1170
Bst2UI CCWGG 4 cut(s) 333, 627, 669, 678
Bst4CI ACNGT 5 cut(s) 202, 459, 1253, 1286, 1583
Bst6I CTCTTC 3 cut(s) 36, 1814, 1939
BstACI GRCGYC 1 cut(s) 1100
BstC8I GCNNGC 7 cut(s) 527, 608, 795, 1297, 1484, 1731, 1735
BstDEI CTNAG 6 cut(s) 123, 228, 577, 1227, 1401, 1941
BstENI CCTNNNNNAGG 2 cut(s) 441, 763
BstF5I GGATG 6 cut(s) 133, 145, 352, 959, 1522, 1852
BstH2I RGCGCY 1 cut(s) 1137
BstHHI GCGC 2 cut(s) 235, 1136
BstKTI GATC 8 cut(s) 31, 196, 592, 647, 728, 890, 1693, 1947
BstMAI GTCTC 2 cut(s) 333, 1936
BstMBI GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
BstMWI GCNNNNNNNGC 6 cut(s) 406, 616, 825, 1133, 1871, 1890
BstNI CCWGG 4 cut(s) 333, 627, 669, 678
BstNSI RCATGY 5 cut(s) 529, 610, 1025, 1508, 1816
BstPAI GACNNNNGTC 1 cut(s) 739
BstSCI CCNGG 5 cut(s) 169, 331, 625, 667, 676
BstSFI CTRYAG 2 cut(s) 250, 1746
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 9 cut(s) 170, 173, 247, 520, 715, 1315, 1349, 1477, 1858
BstX2I RGATCY 3 cut(s) 644, 725, 887
BstYI RGATCY 3 cut(s) 644, 725, 887
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 8 cut(s) 409, 493, 619, 625, 819, 1198, 1721, 1884
BtsCI GGATG 6 cut(s) 133, 145, 352, 959, 1522, 1852
BtsIMutI CAGTG 3 cut(s) 931, 1258, 1794
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 7 cut(s) 527, 608, 795, 1297, 1484, 1731, 1735
CciI TCATGA 3 cut(s) 694, 1177, 1336
CfoI GCGC 2 cut(s) 235, 1136
Cfr10I RCCGGY 2 cut(s) 1034, 1194
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 33, 1216, 1854
CspAI ACCGGT 1 cut(s) 1034
CviQI GTAC 3 cut(s) 33, 1216, 1854
DdeI CTNAG 6 cut(s) 123, 228, 577, 1227, 1401, 1941
DpnI GATC 8 cut(s) 30, 195, 591, 646, 727, 889, 1692, 1946
DpnII GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
EaeI YGGCCR 1 cut(s) 1196
Eam1104I CTCTTC 3 cut(s) 36, 1814, 1939
EarI CTCTTC 3 cut(s) 36, 1814, 1939
Eco130I CCWWGG 5 cut(s) 149, 620, 949, 1094, 1170
Eco147I AGGCCT 1 cut(s) 625
Eco24I GRGCYC 2 cut(s) 411, 944
Eco47I GGWCC 6 cut(s) 23, 515, 1037, 1091, 1430, 1837
Eco47III AGCGCT 1 cut(s) 1135
Eco57I CTGAAG 2 cut(s) 60, 330
Eco81I CCTNAGG 1 cut(s) 228
EcoNI CCTNNNNNAGG 2 cut(s) 441, 763
EcoO109I RGGNCCY 2 cut(s) 408, 515
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 4 cut(s) 331, 625, 667, 676
EcoT14I CCWWGG 5 cut(s) 149, 620, 949, 1094, 1170
EcoT38I GRGCYC 2 cut(s) 411, 944
ErhI CCWWGG 5 cut(s) 149, 620, 949, 1094, 1170
Esp3I CGTCTC 2 cut(s) 333, 1936
FaqI GGGAC 2 cut(s) 296, 1505
FauI CCCGC 1 cut(s) 1475
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 339
FokI GGATG 6 cut(s) 132, 140, 339, 946, 1529, 1859
FriOI GRGCYC 2 cut(s) 411, 944
FspBI CTAG 6 cut(s) 512, 522, 1395, 1607, 1667, 1896
GlaI GCGC 2 cut(s) 234, 1135
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 4 cut(s) 462, 534, 750, 928
HaeII RGCGCY 1 cut(s) 1137
HaeIII GGCC 8 cut(s) 409, 493, 619, 625, 819, 1198, 1721, 1884
HapII CCGG 5 cut(s) 170, 419, 1035, 1195, 1922
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 2 cut(s) 235, 1136
Hin1I GRCGYC 1 cut(s) 1100
Hin6I GCGC 2 cut(s) 233, 1134
HinP1I GCGC 2 cut(s) 233, 1134
HinfI GANTC 5 cut(s) 79, 349, 547, 735, 1663
HpaII CCGG 5 cut(s) 170, 419, 1035, 1195, 1922
HphI GGTGA 6 cut(s) 287, 534, 562, 611, 1399, 1912
Hpy166II GTNNAC 2 cut(s) 340, 1267
Hpy188I TCNGA 8 cut(s) 40, 310, 745, 763, 1698, 1760, 1879, 1944
Hpy8I GTNNAC 2 cut(s) 340, 1267
HpyAV CCTTC 7 cut(s) 64, 129, 253, 305, 447, 1693, 1711
HpyCH4III ACNGT 5 cut(s) 202, 459, 1253, 1286, 1583
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 6 cut(s) 703, 959, 1047, 1053, 1708, 1916
HpyF10VI GCNNNNNNNGC 6 cut(s) 406, 616, 825, 1133, 1871, 1890
HpyF3I CTNAG 6 cut(s) 123, 228, 577, 1227, 1401, 1941
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 1100
HspAI GCGC 2 cut(s) 233, 1134
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
LmnI GCTCC 5 cut(s) 73, 947, 977, 1063, 1479
Lsp1109I GCAGC 9 cut(s) 170, 173, 247, 520, 715, 1315, 1349, 1477, 1858
LweI GCATC 4 cut(s) 968, 1213, 1315, 1903
MaeI CTAG 6 cut(s) 512, 522, 1395, 1607, 1667, 1896
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 4 cut(s) 421, 599, 1207, 1573
MalI GATC 8 cut(s) 30, 195, 591, 646, 727, 889, 1692, 1946
MbiI CCGCTC 2 cut(s) 1482, 1714
MboI GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
MboII GAAGA 6 cut(s) 53, 1268, 1700, 1831, 1922, 1926
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 3 cut(s) 644, 725, 887
MhlI GDGCHC 4 cut(s) 411, 944, 1402, 1773
MluCI AATT 9 cut(s) 105, 304, 476, 813, 1368, 1617, 1642, 1788, 1917
MlyI GAGTC 3 cut(s) 73, 541, 729
MmeI TCCRAC 3 cut(s) 826, 1408, 1738
MroXI GAANNNNTTC 1 cut(s) 853
MseI TTAA 3 cut(s) 933, 1155, 1512
MslI CAYNNNNRTG 1 cut(s) 1898
MspI CCGG 5 cut(s) 170, 419, 1035, 1195, 1922
MspR9I CCNGG 5 cut(s) 171, 333, 627, 669, 678
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 1396
MvaI CCWGG 4 cut(s) 333, 627, 669, 678
MwoI GCNNNNNNNGC 6 cut(s) 406, 616, 825, 1133, 1871, 1890
NciI CCSGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 403
NdeII GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
NlaIV GGNNCC 5 cut(s) 24, 409, 943, 1033, 1885
NmuCI GTSAC 3 cut(s) 421, 599, 1207
NspI RCATGY 5 cut(s) 529, 610, 1025, 1508, 1816
OliI CACNNNNGTG 1 cut(s) 1898
PaeI GCATGC 2 cut(s) 529, 610
PagI TCATGA 3 cut(s) 694, 1177, 1336
PceI AGGCCT 1 cut(s) 625
PciI ACATGT 1 cut(s) 1812
PcsI WCGNNNNNNNCGW 1 cut(s) 1658
PctI GAATGC 1 cut(s) 1396
PdmI GAANNNNTTC 1 cut(s) 853
PfeI GAWTC 2 cut(s) 349, 1663
PflMI CCANNNNNTGG 1 cut(s) 626
PfoI TCCNGGA 1 cut(s) 667
PinAI ACCGGT 1 cut(s) 1034
PleI GAGTC 3 cut(s) 73, 541, 729
PpsI GAGTC 3 cut(s) 73, 541, 729
PpuMI RGGWCCY 1 cut(s) 515
PscI ACATGT 1 cut(s) 1812
PshAI GACNNNNGTC 1 cut(s) 739
PsiI TTATAA 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 4 cut(s) 331, 625, 667, 676
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 4 cut(s) 331, 625, 667, 676
PspN4I GGNNCC 5 cut(s) 24, 409, 943, 1033, 1885
PspOMI GGGCCC 1 cut(s) 407
PspPPI RGGWCCY 1 cut(s) 515
PsuI RGATCY 3 cut(s) 644, 725, 887
RsaI GTAC 3 cut(s) 34, 1217, 1855
RsaNI GTAC 3 cut(s) 33, 1216, 1854
RseI CAYNNNNRTG 1 cut(s) 1898
SaqAI TTAA 3 cut(s) 933, 1155, 1512
Sau3AI GATC 8 cut(s) 28, 193, 589, 644, 725, 887, 1690, 1944
SchI GAGTC 3 cut(s) 73, 541, 729
ScrFI CCNGG 5 cut(s) 171, 333, 627, 669, 678
SduI GDGCHC 4 cut(s) 411, 944, 1402, 1773
SfaNI GCATC 4 cut(s) 968, 1213, 1315, 1903
SfcI CTRYAG 2 cut(s) 250, 1746
SinI GGWCC 6 cut(s) 23, 515, 1037, 1091, 1430, 1837
SmiMI CAYNNNNRTG 1 cut(s) 1898
SmlI CTYRAG 2 cut(s) 1593, 1830
SmoI CTYRAG 2 cut(s) 1593, 1830
SphI GCATGC 2 cut(s) 529, 610
Sse9I AATT 9 cut(s) 105, 304, 476, 813, 1368, 1617, 1642, 1788, 1917
SseBI AGGCCT 1 cut(s) 625
SsiI CCGC 6 cut(s) 5, 17, 392, 1482, 1714, 1840
SspMI CTAG 6 cut(s) 512, 522, 1395, 1607, 1667, 1896
StuI AGGCCT 1 cut(s) 625
StyD4I CCNGG 5 cut(s) 169, 331, 625, 667, 676
StyI CCWWGG 5 cut(s) 149, 620, 949, 1094, 1170
TaaI ACNGT 5 cut(s) 202, 459, 1253, 1286, 1583
TaiI ACGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 1585, 1661, 1817
TasI AATT 9 cut(s) 105, 304, 476, 813, 1368, 1617, 1642, 1788, 1917
TatI WGTACW 1 cut(s) 1215
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 349, 1663
Tru1I TTAA 3 cut(s) 933, 1155, 1512
Tru9I TTAA 3 cut(s) 933, 1155, 1512
TscAI CASTG 3 cut(s) 931, 1258, 1801
TseFI GTSAC 3 cut(s) 421, 599, 1207
TseI GCWGC 9 cut(s) 158, 161, 235, 508, 703, 1328, 1362, 1465, 1871
Tsp45I GTSAC 3 cut(s) 421, 599, 1207
TspDTI ATGAA 7 cut(s) 83, 276, 1166, 1353, 1662, 1701, 1792
TspGWI ACGGA 3 cut(s) 1361, 1667, 1918
TspRI CASTG 3 cut(s) 931, 1258, 1801
Van91I CCANNNNNTGG 1 cut(s) 626
VpaK11BI GGWCC 6 cut(s) 23, 515, 1037, 1091, 1430, 1837
XagI CCTNNNNNAGG 2 cut(s) 441, 763
XapI RAATTY 2 cut(s) 304, 1788
XbaI TCTAGA 1 cut(s) 1666
XceI RCATGY 5 cut(s) 529, 610, 1025, 1508, 1816
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 853
XspI CTAG 6 cut(s) 512, 522, 1395, 1607, 1667, 1896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.