pycom09g09110

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
7260190 .. 7264028
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09110.1

Sequence Viewer

Length: 1482 bp
ATGTTTCATTCTCAGGGAGCTTCAAAGCACCCTTGTAGTCTGCTTGTGGTCAATTGTGCGGAAATTTCTGAAGAGAAATGTAATAAGGACACGGCAGATGATAGACTCAGATACCCGTTACCGGAGTTGGTTTCCTCAGGGCGTTTGGAGGTTCAAACTCTGACCAAGCCAACCAAAGAAGAGTTATGTAAAATGCTTGAGTCATATAGGCCGAATCTTGTATACCTGCAAGGAGAACAGCTTGGCAATAATGAAATTGGTTCTCTTGTCTGGGAAGATGTCGACTTGTCGACTCCTGAAGCTATATCTGAGATCTTTGGTGCCACATTGCCTACAACTGTTTATTTGGAGGTTCCATATGGTGCAACATTGGCAGCAGCCATTCACTCAAAGGGGATTCCTTATGTGATATATTGGAGAAGTGAATTTTCTTCCTTTGCTGCTTGCCACTTTCGACATGCTTTACTTTCAGTGGTACAGAGTTCATCAACTCATACATGGGATGCTTTCCAACTTGCATATGCTTCCTTTAGGCTTTACTGTGTAGAAAACAACCATCTCGTTCCTGCTAACATATATAAATCTAGTGCGGAGCTGGGGCCATGTCTTCTTGGTGACCGTATAAAAATCAACGTTGATCTTCCTGAGGTAGACATGGAAGAAAATGAAGAAGGTTCCTTGGGTACTCTCCCTGCTATAAAGATACATGATGATGATGTGACCTTGAGGTTTCTTGTTTGTGGCGAGCCGTCCACATTGGATGCAAGCTTATTAGAACCTTTGGAGGATGGTCTCAATGCCCTCTTAAACATTGAAATGCGTGGGAGCAAGCTTCATGGAAAATTTAGTGCTCCTCCACCGCCTCTTCAGGCTGGGACTTTTTCTCGTGGTGTCGTGACTATGCGATGTGATGTATCAACTTGTAGTTCTGCGCACATATCACTTCTTGTGTCGGGCAGTGCTCAAACTTGCTTTGATGATCAGCTCTTAGAGAATCATATAAAGCATGAAATTATCGAAGAGAGTCAACTTGTACGTGCATTGCCCAAAGATGACGAAACCAAAGCACCTCTATCTGAACCACGAAAGTCTGCGTCAATTGCATGTGGGGCTACAGTATTCGAAGTTAACATGAAGGTTCCTGCATGGGCTTCACAGGTTTTGAGGCAGCTCGCACCTGATGTTTCTTATCACAGTTTAGTTGCACTGGGCATTGCCAGCATTCAGGGATTACCTGTGGCTTCTTTTGAAAAAGATGATGCTGATCGCCTTCTTTTCTTCAGTTCCAGTCCGGGGAAAGATGGTAAATCAAATGACTTGATTCTCAGCAGCCTTCCTACTTGGTTGAGACCACCTCCTCCTAGTAGGAAGAGATCGATCAACCATGCCAAGAGACAAGCCTGGGTTCTCTTGACAGCCAGGGGCTTCCACGTTTACCTGCTTCTAAAATTGATGAAGACAACAGAGTTGTTGGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

54.3

Weight (kDa)

5.44

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 933
Acc36I ACCTGC 2 cut(s) 234, 1446
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 4 cut(s) 222, 282, 290, 651
AciI CCGC 3 cut(s) 59, 590, 860
AclI AACGTT 1 cut(s) 633
AcsI RAATTY 3 cut(s) 63, 425, 842
AcuI CTGAAG 4 cut(s) 90, 318, 851, 1264
AfaI GTAC 3 cut(s) 477, 685, 1035
AfiI CCNNNNNNNGG 2 cut(s) 121, 1293
AgsI TTSAA 4 cut(s) 24, 155, 815, 1250
AjnI CCWGG 2 cut(s) 1400, 1418
AluBI AGCT 8 cut(s) 20, 241, 302, 595, 768, 832, 985, 1171
AluI AGCT 8 cut(s) 20, 241, 302, 595, 768, 832, 985, 1171
Alw21I GWGCWC 2 cut(s) 853, 964
Alw26I GTCTC 3 cut(s) 797, 1342, 1387
AoxI GGCC 2 cut(s) 209, 599
ApeKI GCWGC 5 cut(s) 374, 377, 440, 1168, 1329
ApoI RAATTY 3 cut(s) 63, 425, 842
AspLEI GCGC 1 cut(s) 934
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 1 cut(s) 1293
AsuHPI GGTGA 1 cut(s) 626
AsuII TTCGAA 1 cut(s) 1122
AxyI CCTNAGG 2 cut(s) 136, 645
BanI GGYRCC 1 cut(s) 320
BauI CACGAG 1 cut(s) 885
BbsI GAAGAC 2 cut(s) 599, 1463
Bbv12I GWGCWC 2 cut(s) 853, 964
BbvI GCAGC 5 cut(s) 386, 389, 427, 1180, 1341
BccI CCATC 3 cut(s) 564, 782, 1295
BceAI ACGGC 2 cut(s) 108, 733
BciT130I CCWGG 2 cut(s) 1402, 1420
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 1 cut(s) 1293
BcoDI GTCTC 3 cut(s) 797, 1342, 1387
BfaI CTAG 2 cut(s) 585, 1362
BfmI CTRYAG 1 cut(s) 1113
BfuAI ACCTGC 2 cut(s) 234, 1446
BglII AGATCT 1 cut(s) 312
BisI GCNGC 5 cut(s) 375, 378, 441, 1169, 1330
BlsI GCNGC 5 cut(s) 376, 379, 442, 1170, 1331
Bme1390I CCNGG 3 cut(s) 1293, 1402, 1420
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 5 cut(s) 322, 354, 600, 676, 1140
BmrFI CCNGG 3 cut(s) 1293, 1402, 1420
BmrI ACTGGG 1 cut(s) 1217
BmsI GCATC 3 cut(s) 493, 751, 1249
BmuI ACTGGG 1 cut(s) 1217
BpiI GAAGAC 2 cut(s) 599, 1463
BplI GAGNNNNNCTC 2 cut(s) 1339, 1371
Bpu14I TTCGAA 1 cut(s) 1122
BpuEI CTTGAG 2 cut(s) 218, 745
BpuMI CCSGG 1 cut(s) 1293
Bsa29I ATCGAT 1 cut(s) 1376
BsaAI YACGTR 1 cut(s) 1037
BsaBI GATNNNNATC 1 cut(s) 1263
BsaI GGTCTC 2 cut(s) 797, 1342
BsaJI CCNNGG 4 cut(s) 678, 1292, 1401, 1419
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 1293
Bse1I ACTGG 2 cut(s) 1212, 1287
Bse21I CCTNAGG 2 cut(s) 136, 645
Bse3DI GCAATG 3 cut(s) 326, 1040, 1212
Bse8I GATNNNNATC 1 cut(s) 1263
BseBI CCWGG 2 cut(s) 1402, 1420
BseCI ATCGAT 1 cut(s) 1376
BseDI CCNNGG 4 cut(s) 678, 1292, 1401, 1419
BseGI GGATG 3 cut(s) 508, 766, 793
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 2 cut(s) 121, 1293
BseMI GCAATG 3 cut(s) 326, 1040, 1212
BseMII CTCAG 6 cut(s) 26, 121, 150, 300, 636, 1339
BseNI ACTGG 2 cut(s) 1212, 1287
BseRI GAGGAG 2 cut(s) 843, 1347
BseXI GCAGC 5 cut(s) 386, 389, 427, 1180, 1341
BseYI CCCAGC 2 cut(s) 595, 872
BshFI GGCC 2 cut(s) 211, 601
BshNI GGYRCC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 1376
BsiHKAI GWGCWC 2 cut(s) 853, 964
BsiSI CCGG 2 cut(s) 122, 1292
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 2 cut(s) 121, 1293
BsmAI GTCTC 3 cut(s) 797, 1342, 1387
BsmFI GGGAC 1 cut(s) 889
BsmI GAATGC 1 cut(s) 1221
BsnI GGCC 2 cut(s) 211, 601
Bso31I GGTCTC 2 cut(s) 797, 1342
Bsp119I TTCGAA 1 cut(s) 1122
Bsp1286I GDGCHC 2 cut(s) 853, 964
Bsp143I GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
BspACI CCGC 3 cut(s) 59, 590, 860
BspANI GGCC 2 cut(s) 211, 601
BspCNI CTCAG 6 cut(s) 25, 120, 149, 301, 637, 1338
BspDI ATCGAT 1 cut(s) 1376
BspLI GGNNCC 5 cut(s) 322, 354, 600, 676, 1140
BspMI ACCTGC 2 cut(s) 234, 1446
BspT104I TTCGAA 1 cut(s) 1122
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 2 cut(s) 797, 1342
BsrDI GCAATG 3 cut(s) 326, 1040, 1212
BsrI ACTGG 2 cut(s) 1212, 1287
BssECI CCNNGG 4 cut(s) 678, 1292, 1401, 1419
BssMI GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
BssNAI GTATAC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 885
BssT1I CCWWGG 1 cut(s) 678
Bst1107I GTATAC 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 2 cut(s) 1402, 1420
Bst4CI ACNGT 5 cut(s) 340, 542, 620, 1117, 1196
Bst6I CTCTTC 5 cut(s) 66, 174, 870, 1014, 1364
BstBAI YACGTR 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 1122
BstC8I GCNNGC 6 cut(s) 445, 746, 766, 830, 1173, 1219
BstDEI CTNAG 7 cut(s) 12, 107, 136, 309, 645, 988, 1325
BstEII GGTNACC 1 cut(s) 614
BstF5I GGATG 3 cut(s) 508, 766, 793
BstHHI GCGC 1 cut(s) 934
BstKTI GATC 6 cut(s) 315, 640, 982, 1267, 1376, 1380
BstMAI GTCTC 3 cut(s) 797, 1342, 1387
BstMBI GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
BstMWI GCNNNNNNNGC 4 cut(s) 371, 1100, 1109, 1218
BstNI CCWGG 2 cut(s) 1402, 1420
BstNSI RCATGY 2 cut(s) 461, 1107
BstPI GGTNACC 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 1291, 1400, 1418
BstSFI CTRYAG 1 cut(s) 1113
BstV1I GCAGC 5 cut(s) 386, 389, 427, 1180, 1341
BstV2I GAAGAC 2 cut(s) 599, 1463
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BstZ17I GTATAC 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 1376
Bsu36I CCTNAGG 2 cut(s) 136, 645
BsuRI GGCC 2 cut(s) 211, 601
BsuTUI ATCGAT 1 cut(s) 1376
BtgZI GCGATG 1 cut(s) 919
BtsCI GGATG 3 cut(s) 508, 766, 793
BtsI GCAGTG 1 cut(s) 964
BtsIMutI CAGTG 3 cut(s) 477, 964, 1205
BveI ACCTGC 2 cut(s) 234, 1446
Cac8I GCNNGC 6 cut(s) 445, 746, 766, 830, 1173, 1219
CfoI GCGC 1 cut(s) 934
Cfr13I GGNCC 1 cut(s) 599
ClaI ATCGAT 1 cut(s) 1376
CseI GACGC 1 cut(s) 1083
Csp6I GTAC 3 cut(s) 476, 684, 1034
CviQI GTAC 3 cut(s) 476, 684, 1034
DdeI CTNAG 7 cut(s) 12, 107, 136, 309, 645, 988, 1325
DpnI GATC 6 cut(s) 314, 639, 981, 1266, 1375, 1379
DpnII GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
Eam1104I CTCTTC 5 cut(s) 66, 174, 870, 1014, 1364
EarI CTCTTC 5 cut(s) 66, 174, 870, 1014, 1364
Eco130I CCWWGG 1 cut(s) 678
Eco31I GGTCTC 2 cut(s) 797, 1342
Eco57I CTGAAG 4 cut(s) 90, 318, 851, 1264
Eco81I CCTNAGG 2 cut(s) 136, 645
Eco91I GGTNACC 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 614
EcoRII CCWGG 2 cut(s) 1400, 1418
EcoT14I CCWWGG 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 678
FaqI GGGAC 1 cut(s) 889
FauNDI CATATG 2 cut(s) 358, 520
FbaI TGATCA 1 cut(s) 979
FblI GTMKAC 4 cut(s) 222, 282, 290, 651
Fnu4HI GCNGC 5 cut(s) 375, 378, 441, 1169, 1330
FokI GGATG 3 cut(s) 515, 773, 800
Fsp4HI GCNGC 5 cut(s) 375, 378, 441, 1169, 1330
FspBI CTAG 2 cut(s) 585, 1362
FspI TGCGCA 1 cut(s) 933
GlaI GCGC 1 cut(s) 933
GluI GCNGC 5 cut(s) 375, 378, 441, 1169, 1330
GsaI CCCAGC 2 cut(s) 599, 876
HaeIII GGCC 2 cut(s) 211, 601
HapII CCGG 2 cut(s) 122, 1292
HgaI GACGC 1 cut(s) 1083
HhaI GCGC 1 cut(s) 934
Hin6I GCGC 1 cut(s) 932
HinP1I GCGC 1 cut(s) 932
HincII GTYRAC 4 cut(s) 283, 291, 1028, 1129
HindII GTYRAC 4 cut(s) 283, 291, 1028, 1129
HindIII AAGCTT 2 cut(s) 766, 830
HinfI GANTC 8 cut(s) 105, 200, 214, 292, 397, 994, 1024, 1321
HpaI GTTAAC 1 cut(s) 1129
HpaII CCGG 2 cut(s) 122, 1292
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 8 cut(s) 223, 283, 291, 652, 753, 1028, 1129, 1435
Hpy188I TCNGA 5 cut(s) 70, 110, 162, 310, 1078
Hpy188III TCNNGA 4 cut(s) 296, 644, 895, 1411
Hpy8I GTNNAC 8 cut(s) 223, 283, 291, 652, 753, 1028, 1129, 1435
HpyAV CCTTC 4 cut(s) 665, 1129, 1280, 1343
HpyCH4III ACNGT 5 cut(s) 340, 542, 620, 1117, 1196
HpyCH4IV ACGT 3 cut(s) 633, 1036, 1431
HpyCH4V TGCA 8 cut(s) 229, 365, 518, 764, 1040, 1103, 1145, 1205
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 1100, 1109, 1218
HpyF3I CTNAG 7 cut(s) 12, 107, 136, 309, 645, 988, 1325
HpySE526I ACGT 3 cut(s) 633, 1036, 1431
HspAI GCGC 1 cut(s) 932
Ksp22I TGATCA 1 cut(s) 979
KspAI GTTAAC 1 cut(s) 1129
Kzo9I GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
LmnI GCTCC 5 cut(s) 17, 592, 825, 856, 1474
Lsp1109I GCAGC 5 cut(s) 386, 389, 427, 1180, 1341
LweI GCATC 3 cut(s) 493, 751, 1249
MaeI CTAG 2 cut(s) 585, 1362
MaeII ACGT 3 cut(s) 633, 1036, 1431
MaeIII GTNAC 4 cut(s) 117, 614, 718, 895
MalI GATC 6 cut(s) 314, 639, 981, 1266, 1375, 1379
MboI GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
MfeI CAATTG 2 cut(s) 52, 1098
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 853, 964
MluCI AATT 8 cut(s) 52, 63, 255, 425, 842, 1011, 1098, 1448
MlyI GAGTC 4 cut(s) 99, 209, 286, 1033
MmeI TCCRAC 2 cut(s) 535, 1452
MseI TTAA 2 cut(s) 806, 1128
MslI CAYNNNNRTG 2 cut(s) 711, 815
MspI CCGG 2 cut(s) 122, 1292
MspR9I CCNGG 3 cut(s) 1293, 1402, 1420
MunI CAATTG 2 cut(s) 52, 1098
Mva1269I GAATGC 1 cut(s) 1221
MvaI CCWGG 2 cut(s) 1402, 1420
MwoI GCNNNNNNNGC 4 cut(s) 371, 1100, 1109, 1218
NciI CCSGG 1 cut(s) 1293
NdeI CATATG 2 cut(s) 358, 520
NdeII GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
NlaIV GGNNCC 5 cut(s) 322, 354, 600, 676, 1140
NmuCI GTSAC 3 cut(s) 614, 718, 895
NsbI TGCGCA 1 cut(s) 933
NspI RCATGY 2 cut(s) 461, 1107
NspV TTCGAA 1 cut(s) 1122
PctI GAATGC 1 cut(s) 1221
PfeI GAWTC 4 cut(s) 214, 397, 994, 1321
PkrI GCNGC 5 cut(s) 376, 379, 442, 1170, 1331
PleI GAGTC 4 cut(s) 99, 208, 286, 1032
PpsI GAGTC 4 cut(s) 99, 208, 286, 1032
Ppu21I YACGTR 1 cut(s) 1037
Psp1406I AACGTT 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 1400, 1418
PspEI GGTNACC 1 cut(s) 614
PspFI CCCAGC 2 cut(s) 595, 872
PspGI CCWGG 2 cut(s) 1400, 1418
PspN4I GGNNCC 5 cut(s) 322, 354, 600, 676, 1140
PspPI GGNCC 1 cut(s) 599
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 3 cut(s) 477, 685, 1035
RsaNI GTAC 3 cut(s) 476, 684, 1034
RseI CAYNNNNRTG 2 cut(s) 711, 815
SalI GTCGAC 2 cut(s) 281, 289
SaqAI TTAA 2 cut(s) 806, 1128
SatI GCNGC 5 cut(s) 375, 378, 441, 1169, 1330
Sau3AI GATC 6 cut(s) 312, 637, 979, 1264, 1373, 1377
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 4 cut(s) 99, 209, 286, 1033
ScrFI CCNGG 3 cut(s) 1293, 1402, 1420
SduI GDGCHC 2 cut(s) 853, 964
SfaNI GCATC 3 cut(s) 493, 751, 1249
SfcI CTRYAG 1 cut(s) 1113
SfuI TTCGAA 1 cut(s) 1122
SmiMI CAYNNNNRTG 2 cut(s) 711, 815
SmlI CTYRAG 2 cut(s) 197, 724
SmoI CTYRAG 2 cut(s) 197, 724
Sse9I AATT 8 cut(s) 52, 63, 255, 425, 842, 1011, 1098, 1448
SsiI CCGC 3 cut(s) 59, 590, 860
SspMI CTAG 2 cut(s) 585, 1362
StyD4I CCNGG 3 cut(s) 1291, 1400, 1418
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 5 cut(s) 340, 542, 620, 1117, 1196
TaiI ACGT 3 cut(s) 636, 1039, 1434
TaqI TCGA 6 cut(s) 282, 290, 454, 1017, 1122, 1376
TasI AATT 8 cut(s) 52, 63, 255, 425, 842, 1011, 1098, 1448
TfiI GAWTC 4 cut(s) 214, 397, 994, 1321
Tru1I TTAA 2 cut(s) 806, 1128
Tru9I TTAA 2 cut(s) 806, 1128
TscAI CASTG 3 cut(s) 477, 964, 1212
TseFI GTSAC 3 cut(s) 614, 718, 895
TseI GCWGC 5 cut(s) 374, 377, 440, 1168, 1329
Tsp45I GTSAC 3 cut(s) 614, 718, 895
TspDTI ATGAA 7 cut(s) 267, 474, 681, 824, 1023, 1148, 1469
TspRI CASTG 3 cut(s) 477, 964, 1212
XapI RAATTY 3 cut(s) 63, 425, 842
XceI RCATGY 2 cut(s) 461, 1107
XmiI GTMKAC 4 cut(s) 222, 282, 290, 651
XspI CTAG 2 cut(s) 585, 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.