Rorug02G0401200

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006899
Physical Location & Seq
Reverse (-)
51233777 .. 51235536
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0401200.1

Sequence Viewer

Length: 432 bp
ATGGCATCTTTGGCAACCTTGGCAGCAGTTCAACCAGCCACCATCAACGGCCTTGGAGGAAGCTCCCTCTCCGGGACTAAGCTCGTCGTCAAGCCCACTCGCCAGACCCTCAGACCCAGAAATGTCAGTGGTGCTGTGGTGGCCAAGTATGGAGACAAAAGTGTTTACTTTGACCTTGAGGATCTGGGCAACACCACTGGAAAATGGGACTTGTACGGCTCAGATGCCCCCTCACCTTACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGGTTGCTGCTCAAGTTCTTGATCTTGGGAGGGGCTTCCACCATTGCTTACCTTAGTGCCACTGCCTCAGATGACCTTCTACCCATTAAGAAGGGCCCACAACTTCCCCCAAAGCTGGGACCACGTGGCAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

143

Amino Acids

15.08

Weight (kDa)

9.84

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSI_PsaH PF03244 7 - 143 5.6e-70 Photosystem I reaction centre subunit VI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 233
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 72, 294, 409, 410
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 3 cut(s) 63, 82, 409
AluI AGCT 3 cut(s) 63, 82, 409
Alw26I GTCTC 2 cut(s) 147, 260
AlwI GGATC 1 cut(s) 189
AoxI GGCC 3 cut(s) 49, 141, 388
ApaI GGGCCC 1 cut(s) 392
ApeKI GCWGC 3 cut(s) 23, 275, 301
AspS9I GGNCC 3 cut(s) 388, 389, 413
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 225, 277
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 392
BbrPI CACGTG 1 cut(s) 419
BbvI GCAGC 3 cut(s) 35, 262, 288
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 64, 232
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 147, 260
BglII AGATCT 1 cut(s) 426
BisI GCNGC 3 cut(s) 24, 276, 302
BlsI GCNGC 3 cut(s) 25, 277, 303
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 3 cut(s) 388, 389, 413
BmiI GGNNCC 2 cut(s) 390, 414
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 14, 214
BpuEI CTTGAG 2 cut(s) 197, 290
BpuMI CCSGG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 18, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 294, 409, 410
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 18, 52
BseLI CCNNNNNNNGG 4 cut(s) 72, 294, 409, 410
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 124, 234, 375
BseNI ACTGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 3 cut(s) 35, 262, 288
BseYI CCCAGC 1 cut(s) 409
BshFI GGCC 3 cut(s) 51, 143, 390
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 3 cut(s) 88, 221, 426
BslI CCNNNNNNNGG 4 cut(s) 72, 294, 409, 410
BsmAI GTCTC 2 cut(s) 147, 260
BsmFI GGGAC 3 cut(s) 88, 221, 426
BsnI GGCC 3 cut(s) 51, 143, 390
Bsp120I GGGCCC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 181, 315, 426
BspANI GGCC 3 cut(s) 51, 143, 390
BspCNI CTCAG 3 cut(s) 123, 233, 374
BspLI GGNNCC 2 cut(s) 390, 414
BspPI GGATC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 18, 52
BssMI GATC 3 cut(s) 181, 315, 426
BssT1I CCWWGG 2 cut(s) 18, 52
Bst6I CTCTTC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 419
BstDEI CTNAG 5 cut(s) 78, 110, 220, 347, 361
BstKTI GATC 3 cut(s) 184, 318, 429
BstMAI GTCTC 2 cut(s) 147, 260
BstMBI GATC 3 cut(s) 181, 315, 426
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 140
BstSCI CCNGG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 35, 262, 288
BstX2I RGATCY 2 cut(s) 181, 426
BstYI RGATCY 2 cut(s) 181, 426
BsuRI GGCC 3 cut(s) 51, 143, 390
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 133, 195, 354
Cfr13I GGNCC 3 cut(s) 388, 389, 413
Csp6I GTAC 1 cut(s) 214
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 5 cut(s) 78, 110, 220, 347, 361
DpnI GATC 3 cut(s) 183, 317, 428
DpnII GATC 3 cut(s) 181, 315, 426
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 18, 52
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 18, 52
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 2 cut(s) 18, 52
FaiI YATR 1 cut(s) 150
FaqI GGGAC 3 cut(s) 88, 221, 426
Fnu4HI GCNGC 3 cut(s) 24, 276, 302
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 24, 276, 302
GluI GCNGC 3 cut(s) 24, 276, 302
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 3 cut(s) 51, 143, 390
HapII CCGG 1 cut(s) 72
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 225, 277
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 5 cut(s) 113, 223, 252, 364, 431
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 379, 380
HpyCH4IV ACGT 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 140
HpyF3I CTNAG 5 cut(s) 78, 110, 220, 347, 361
HpySE526I ACGT 1 cut(s) 418
Kzo9I GATC 3 cut(s) 181, 315, 426
LmnI GCTCC 2 cut(s) 68, 283
LpnPI CCDG 7 cut(s) 48, 85, 116, 130, 170, 183, 395
Lsp1109I GCAGC 3 cut(s) 35, 262, 288
LweI GCATC 2 cut(s) 14, 214
MaeII ACGT 1 cut(s) 418
MalI GATC 3 cut(s) 183, 317, 428
MboI GATC 3 cut(s) 181, 315, 426
MboII GAAGA 1 cut(s) 239
MflI RGATCY 2 cut(s) 181, 426
MhlI GDGCHC 1 cut(s) 392
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 9 cut(s) 50, 77, 119, 172, 241, 255, 287, 317, 370
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 140
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 181, 315, 426
NlaIV GGNNCC 2 cut(s) 390, 414
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 3 cut(s) 25, 277, 303
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 419
PspCI CACGTG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 390, 414
PspOMI GGGCCC 1 cut(s) 388
PspPI GGNCC 3 cut(s) 388, 389, 413
PsuI RGATCY 2 cut(s) 181, 426
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 24, 276, 302
Sau3AI GATC 3 cut(s) 181, 315, 426
Sau96I GGNCC 3 cut(s) 388, 389, 413
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 392
SetI ASST 9 cut(s) 20, 65, 84, 177, 238, 348, 372, 411, 421
SfaNI GCATC 2 cut(s) 14, 214
SinI GGWCC 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 176, 305
SmoI CTYRAG 2 cut(s) 176, 305
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 2 cut(s) 18, 52
TaiI ACGT 1 cut(s) 421
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 133, 202, 361
TseI GCWGC 3 cut(s) 23, 275, 301
TspRI CASTG 3 cut(s) 133, 202, 361
VpaK11BI GGWCC 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.