Rroxscaffold_2G00099380

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006899
Physical Location & Seq
Forward (+)
21067927 .. 21075279
7353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099380.1

Sequence Viewer

Length: 2265 bp
ATGTTTCATGCTCAGGGAACTTGTAGTGTTCTTGTGGTCACTTGTGGAGAGATTTCGGAAGATAAGCGTGGTAAGGACATTCCGGAGGATAAGCTGAGGTACCCGTTTCCGGAGTTGGTATCTTCAGGGCGTTTGGAGGTTCAAACTCTGACTAACCCAAGCAAAGAGGAGTTTTGTAAATTGCTTGAATCGTATAAGCCGAATCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGGTTCTCTTACCTGGAGAGATGCTGATTTGTCAACTGCTGAATCTATATCCGACATCTTTGATGCCACATTGCCTACAACTGTTTATTTGGAGGTTCCAAATGGCGAAGAATTGGCAGTGGCACTTCAATCAAAGGGAATTCCATACGTGATATATTGGAAAGATGCATTTTCTACTTATGCTGCTTCCCACTTTCGACATGCTTTACTTTCAGTGGTACAAAGTTCATCAACTCATACATGGGATGCTTTCCAACTTGCACATGCTTCCTTTAGGCTTTACTGCGTACAAAACAACCATGTTGTTCGTGCTAACTTAGATAAATCCAGTGCTGAGCTGGGCCCGTGCATTCTTGGTGAGCATTTGAAAATATGTGTTGACCCCCTGAAGCAGATATGGAGGAAGATGAAGAAGCCCTCCACATTGGATGCAGGCATATTAGAACCATTGGAGGATGGTCTCAATGCCCTTCTAAACATCGAAATGCGTGGAAGCAAGCTTCATGGCAAGTTTAGTGCTCCTCCGCCACCTCTTCAGGCTGGCACATTTTCTCGTGGTGTTGTGACTATGCGATGTGATATATCAACTTGTAGTTCTGCTCACATATCACTTCTTGTGTCGGGTAGTGCACAAACTTGCTTCGATGATCAGCTCTTGGAGAATCATATAAAGCATGAAGTCATTGAGATGAATCAACTAGTACATGCACTCCCCAACAATGACGCAAAGAAATTACCTCTAGCGGAACCACGAAAATCTGCCGCAATTGCCTGTGGAGCTACAGTATTTGAAGTTAGCATGAAGGTTCCTGTATGGGCGTCACAGGTTTTGAGGCAGCTTGCACCTGATGTTTCTTATCATAGTTTAGTTGCACTTGGAATCGCCAGCATTCAGGGGTTACCAGTTGCTTCTTTTGAGAAAGATGATGCTGACCGCCTTCTTTTCTTCTGTTCAAGTCGAGGGAAAGATAGCAAGTCAAATGATTTCTTTGTTAGCAGCCCTCCTGCTTGGTTGAGACCACCTGCTCCTAGTAAGAAGAGATCTCGCCCATGCCAAGAGACAATCCCAGGCTTTCGTGGCAGCCAGGTGCTTCCAAATCTAGCTGCTTCTAAAGTAGAGGAAAATGAAAAAGGACTTGGAGCAGCGAATGGATTTAGCACACCATTGCTCCCGGCCAGGCAAAGATTAAAAACAGCTGCCATGCGGCCCATTCCTCATGTTCGTCGTCCTAAAATGACACCATTTTCTGGAATTTCTGAGGTAAATGGGCATGATGGAAGCCAGGTGGTGAAGGCTCATCTGCCTCCTGTTCCGCCCACAAAGCTCAATATTGTTGGATTGACGCCTACAACGCAACGAAAGTCGTACTCCAGCTCATCACAAGCTAAGCAGATTATTTCCTTGAATCCTCTGCCTTTAAAGAAACATGGTTGTGGTCGAGGCCCAATACATTCTTGCTTAGAGGAGGAGTTTTTGAAGGATGTAATGCAGTTTCTACTCCTCCGTGGACATAATCGACTCATTCCACAGGGTGGACTGACTGAGTTTCCAGATGCCATTCTCAATGGAAAACGTCTTGACCTCTACAACTTGTATAAAGAGGTGGTTACCAGAGGAGGCTTTCATGTTGGCAATGGCATCAACTGGAAAGGACAGATCTTTTCGAAGATGCGCAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTTAAAAGACATTACGAAACCTACCTTCTTGAATATGAGTTGGCTCATGATGATGTGGATGGAGAGTGTTGCTTATTGTGTCACAGTAGCGCAGCAGGGGATTGGGTAAACTGCGGAATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGACAGGGTCTTGGTGCCTTTAAGGATTATGCAAAAACAGATGGGCTGGAATACATTTGTCCGCATTGCAGTATTAGCAACTTCAAGAAGAAACCGCAGAAAGTCACAAATGGATTTCCCCAAGGCTCAACACTATCACGGCCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

754

Amino Acids

83.14

Weight (kDa)

8.41

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 570 - 667 1.5e-13 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1276
Acc16I TGCGCA 1 cut(s) 1919
Acc36I ACCTGC 1 cut(s) 1276
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 99, 2129
AccB7I CCANNNNNTGG 2 cut(s) 1493, 1778
AccI GTMKAC 1 cut(s) 210
AccIII TCCGGA 2 cut(s) 82, 109
AciI CCGC 9 cut(s) 770, 989, 1008, 1180, 1450, 1559, 2076, 2177, 2210
AcoI YGGCCR 2 cut(s) 1419, 2255
AcsI RAATTY 2 cut(s) 384, 1497
AcuI CTGAAG 3 cut(s) 108, 653, 764
AcyI GRCGYC 2 cut(s) 1064, 1589
AdeI CACNNNGTG 1 cut(s) 1778
AfaI GTAC 5 cut(s) 101, 465, 534, 948, 1613
AfiI CCNNNNNNNGG 3 cut(s) 109, 1493, 1778
AhlI ACTAGT 1 cut(s) 943
AjnI CCWGG 5 cut(s) 257, 1312, 1329, 1421, 1527
AjuI GAANNNNNNNTTGG 2 cut(s) 1365, 1397
Alw21I GWGCWC 2 cut(s) 766, 877
Alw26I GTCTC 3 cut(s) 710, 1255, 1298
Alw44I GTGCAC 1 cut(s) 873
Aor13HI TCCGGA 2 cut(s) 82, 109
AoxI GGCC 6 cut(s) 586, 1419, 1451, 1687, 2094, 2255
ApaI GGGCCC 2 cut(s) 590, 2098
ApaLI GTGCAC 1 cut(s) 873
ApeKI GCWGC 9 cut(s) 226, 428, 1081, 1242, 1326, 1349, 1388, 1442, 2054
ApoI RAATTY 2 cut(s) 384, 1497
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 1920, 2054
AspS9I GGNCC 6 cut(s) 586, 587, 1452, 1688, 2094, 2095
AsuC2I CCSGG 1 cut(s) 1418
AsuHPI GGTGA 3 cut(s) 614, 1546, 2099
AsuII TTCGAA 1 cut(s) 1910
BaeGI GKGCMC 3 cut(s) 590, 877, 2098
BanI GGYRCC 2 cut(s) 99, 2129
BanII GRGCYC 2 cut(s) 590, 2098
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 2122
Bbv12I GWGCWC 2 cut(s) 766, 877
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 9 cut(s) 238, 415, 1093, 1254, 1336, 1338, 1400, 1429, 2066
BccI CCATC 4 cut(s) 695, 1514, 2015, 2150
BciT130I CCWGG 5 cut(s) 259, 1314, 1331, 1423, 1529
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 1 cut(s) 1418
BcoDI GTCTC 3 cut(s) 710, 1255, 1298
BcuI ACTAGT 1 cut(s) 943
BfaI CTAG 4 cut(s) 944, 986, 1275, 1346
BfmI CTRYAG 1 cut(s) 1026
BfuAI ACCTGC 1 cut(s) 1276
BglII AGATCT 2 cut(s) 1286, 1902
BlpI GCTNAGC 2 cut(s) 579, 1632
Bme1390I CCNGG 6 cut(s) 259, 1314, 1331, 1418, 1423, 1529
BmgT120I GGNCC 6 cut(s) 586, 587, 1452, 1688, 2094, 2095
BmiI GGNNCC 7 cut(s) 101, 342, 588, 993, 1053, 2096, 2131
BmrFI CCNGG 6 cut(s) 259, 1314, 1331, 1418, 1423, 1529
BmsI GCATC 9 cut(s) 256, 298, 400, 481, 664, 1162, 1789, 1893, 1905
BpiI GAAGAC 1 cut(s) 2122
BpmI CTGGAG 2 cut(s) 280, 1600
Bpu10I CCTNAGC 2 cut(s) 12, 95
Bpu1102I GCTNAGC 2 cut(s) 579, 1632
Bpu14I TTCGAA 1 cut(s) 1910
BpuMI CCSGG 1 cut(s) 1418
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 2 cut(s) 1064, 1589
BsaI GGTCTC 2 cut(s) 710, 1255
BsaJI CCNNGG 3 cut(s) 1312, 1750, 2236
BsaWI WCCGGW 2 cut(s) 82, 109
BsaXI ACNNNNNCTCC 6 cut(s) 939, 969, 1014, 1044, 1398, 1428
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 1493, 1778
Bse1I ACTGG 4 cut(s) 573, 1148, 1895, 1951
Bse3DI GCAATG 4 cut(s) 314, 1409, 1885, 2179
BseAI TCCGGA 2 cut(s) 82, 109
BseBI CCWGG 5 cut(s) 259, 1314, 1331, 1423, 1529
BseDI CCNNGG 3 cut(s) 1312, 1750, 2236
BseGI GGATG 5 cut(s) 496, 679, 706, 1732, 2026
BseLI CCNNNNNNNGG 3 cut(s) 109, 1493, 1778
BseMI GCAATG 4 cut(s) 314, 1409, 1885, 2179
BseMII CTCAG 5 cut(s) 26, 86, 570, 1494, 1779
BseNI ACTGG 4 cut(s) 573, 1148, 1895, 1951
BseRI GAGGAG 6 cut(s) 182, 756, 1724, 1727, 1736, 1875
BseSI GKGCMC 3 cut(s) 590, 877, 2098
BseXI GCAGC 9 cut(s) 238, 415, 1093, 1254, 1336, 1338, 1400, 1429, 2066
BseYI CCCAGC 1 cut(s) 583
BshFI GGCC 6 cut(s) 588, 1421, 1453, 1689, 2096, 2257
BshNI GGYRCC 2 cut(s) 99, 2129
BsiHKAI GWGCWC 2 cut(s) 766, 877
BsiSI CCGG 3 cut(s) 83, 110, 1418
BslI CCNNNNNNNGG 3 cut(s) 109, 1493, 1778
BsmAI GTCTC 3 cut(s) 710, 1255, 1298
BsmI GAATGC 2 cut(s) 594, 1134
BsnI GGCC 6 cut(s) 588, 1421, 1453, 1689, 2096, 2257
Bso31I GGTCTC 2 cut(s) 710, 1255
Bsp119I TTCGAA 1 cut(s) 1910
Bsp120I GGGCCC 2 cut(s) 586, 2094
Bsp1286I GDGCHC 4 cut(s) 590, 766, 877, 2098
Bsp13I TCCGGA 2 cut(s) 82, 109
Bsp143I GATC 3 cut(s) 892, 1286, 1902
Bsp1720I GCTNAGC 2 cut(s) 579, 1632
BspACI CCGC 9 cut(s) 770, 989, 1008, 1180, 1450, 1559, 2076, 2177, 2210
BspANI GGCC 6 cut(s) 588, 1421, 1453, 1689, 2096, 2257
BspCNI CTCAG 5 cut(s) 25, 87, 571, 1495, 1780
BspEI TCCGGA 2 cut(s) 82, 109
BspHI TCATGA 1 cut(s) 2008
BspLI GGNNCC 7 cut(s) 101, 342, 588, 993, 1053, 2096, 2131
BspMI ACCTGC 1 cut(s) 1276
BspT104I TTCGAA 1 cut(s) 1910
BspT107I GGYRCC 2 cut(s) 99, 2129
BspTNI GGTCTC 2 cut(s) 710, 1255
BsrDI GCAATG 4 cut(s) 314, 1409, 1885, 2179
BsrI ACTGG 4 cut(s) 573, 1148, 1895, 1951
BssECI CCNNGG 3 cut(s) 1312, 1750, 2236
BssMI GATC 3 cut(s) 892, 1286, 1902
BssNAI GTATAC 1 cut(s) 211
BssNI GRCGYC 2 cut(s) 1064, 1589
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 2236
Bst1107I GTATAC 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 5 cut(s) 259, 1314, 1331, 1423, 1529
Bst4CI ACNGT 4 cut(s) 328, 1030, 2048, 2262
Bst6I CTCTTC 2 cut(s) 783, 1277
BstACI GRCGYC 2 cut(s) 1064, 1589
BstBAI YACGTR 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 1910
BstC8I GCNNGC 5 cut(s) 679, 743, 787, 1086, 1132
BstDEI CTNAG 8 cut(s) 12, 95, 562, 579, 1503, 1632, 1705, 1788
BstDSI CCRYGG 1 cut(s) 1750
BstEII GGTNACC 2 cut(s) 1143, 1852
BstF5I GGATG 5 cut(s) 496, 679, 706, 1732, 2026
BstHHI GCGC 2 cut(s) 1920, 2054
BstKTI GATC 3 cut(s) 895, 1289, 1905
BstMAI GTCTC 3 cut(s) 710, 1255, 1298
BstMBI GATC 3 cut(s) 892, 1286, 1902
BstMWI GCNNNNNNNGC 7 cut(s) 223, 1013, 1022, 1323, 1567, 1597, 2190
BstNI CCWGG 5 cut(s) 259, 1314, 1331, 1423, 1529
BstNSI RCATGY 3 cut(s) 449, 512, 953
BstPI GGTNACC 2 cut(s) 1143, 1852
BstSCI CCNGG 6 cut(s) 257, 1312, 1329, 1416, 1421, 1527
BstSFI CTRYAG 1 cut(s) 1026
BstSLI GKGCMC 3 cut(s) 590, 877, 2098
BstV1I GCAGC 9 cut(s) 238, 415, 1093, 1254, 1336, 1338, 1400, 1429, 2066
BstV2I GAAGAC 1 cut(s) 2122
BstX2I RGATCY 2 cut(s) 1286, 1902
BstYI RGATCY 2 cut(s) 1286, 1902
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 6 cut(s) 588, 1421, 1453, 1689, 2096, 2257
BtgI CCRYGG 1 cut(s) 1750
BtgZI GCGATG 1 cut(s) 832
BtsCI GGATG 5 cut(s) 496, 679, 706, 1732, 2026
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 369, 465, 580, 2258
BveI ACCTGC 1 cut(s) 1276
Cac8I GCNNGC 5 cut(s) 679, 743, 787, 1086, 1132
CciI TCATGA 1 cut(s) 2008
CfoI GCGC 2 cut(s) 1920, 2054
Cfr13I GGNCC 6 cut(s) 586, 587, 1452, 1688, 2094, 2095
CseI GACGC 3 cut(s) 977, 1053, 1597
Csp6I GTAC 5 cut(s) 100, 464, 533, 947, 1612
CviQI GTAC 5 cut(s) 100, 464, 533, 947, 1612
DdeI CTNAG 8 cut(s) 12, 95, 562, 579, 1503, 1632, 1705, 1788
DpnI GATC 3 cut(s) 894, 1288, 1904
DpnII GATC 3 cut(s) 892, 1286, 1902
DraI TTTAAA 1 cut(s) 1665
DraIII CACNNNGTG 1 cut(s) 1778
EaeI YGGCCR 2 cut(s) 1419, 2255
Eam1104I CTCTTC 2 cut(s) 783, 1277
EarI CTCTTC 2 cut(s) 783, 1277
EciI GGCGGA 2 cut(s) 759, 1548
Eco130I CCWWGG 1 cut(s) 2236
Eco24I GRGCYC 2 cut(s) 590, 2098
Eco31I GGTCTC 2 cut(s) 710, 1255
Eco57I CTGAAG 3 cut(s) 108, 653, 764
Eco91I GGTNACC 2 cut(s) 1143, 1852
EcoO65I GGTNACC 2 cut(s) 1143, 1852
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 5 cut(s) 257, 1312, 1329, 1421, 1527
EcoT14I CCWWGG 1 cut(s) 2236
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 2 cut(s) 590, 2098
ErhI CCWWGG 1 cut(s) 2236
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 1 cut(s) 210
FokI GGATG 5 cut(s) 503, 686, 713, 1739, 2033
FriOI GRGCYC 2 cut(s) 590, 2098
FspBI CTAG 4 cut(s) 944, 986, 1275, 1346
FspI TGCGCA 1 cut(s) 1919
GlaI GCGC 2 cut(s) 1919, 2053
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 2 cut(s) 280, 1600
HaeIII GGCC 6 cut(s) 588, 1421, 1453, 1689, 2096, 2257
HapII CCGG 3 cut(s) 83, 110, 1418
HgaI GACGC 3 cut(s) 977, 1053, 1597
HhaI GCGC 2 cut(s) 1920, 2054
Hin1I GRCGYC 2 cut(s) 1064, 1589
Hin6I GCGC 2 cut(s) 1918, 2052
HinP1I GCGC 2 cut(s) 1918, 2052
HincII GTYRAC 2 cut(s) 279, 625
HindII GTYRAC 2 cut(s) 279, 625
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 8 cut(s) 188, 202, 287, 907, 937, 1125, 1651, 1764
HpaII CCGG 3 cut(s) 83, 110, 1418
HphI GGTGA 3 cut(s) 614, 1546, 2099
Hpy166II GTNNAC 7 cut(s) 211, 279, 625, 875, 1754, 1781, 2071
Hpy188I TCNGA 4 cut(s) 58, 150, 298, 1504
Hpy188III TCNNGA 8 cut(s) 83, 110, 1494, 1796, 1823, 1991, 2009, 2200
Hpy8I GTNNAC 7 cut(s) 211, 279, 625, 875, 1754, 1781, 2071
Hpy99I CGWCG 1 cut(s) 1473
HpyAV CCTTC 6 cut(s) 725, 1042, 1193, 1531, 1717, 1997
HpyCH4III ACNGT 4 cut(s) 328, 1030, 2048, 2262
HpyCH4IV ACGT 2 cut(s) 393, 1819
HpyF10VI GCNNNNNNNGC 7 cut(s) 223, 1013, 1022, 1323, 1567, 1597, 2190
HpyF3I CTNAG 8 cut(s) 12, 95, 562, 579, 1503, 1632, 1705, 1788
HpySE526I ACGT 2 cut(s) 393, 1819
Hsp92I GRCGYC 2 cut(s) 1064, 1589
HspAI GCGC 2 cut(s) 1918, 2052
Kpn2I TCCGGA 2 cut(s) 82, 109
KpnI GGTACC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 3 cut(s) 892, 1286, 1902
LmnI GCTCC 5 cut(s) 769, 1022, 1276, 1385, 1419
Lsp1109I GCAGC 9 cut(s) 238, 415, 1093, 1254, 1336, 1338, 1400, 1429, 2066
LweI GCATC 9 cut(s) 256, 298, 400, 481, 664, 1162, 1789, 1893, 1905
MaeI CTAG 4 cut(s) 944, 986, 1275, 1346
MaeII ACGT 2 cut(s) 393, 1819
MaeIII GTNAC 8 cut(s) 37, 808, 1065, 1143, 1852, 2042, 2108, 2218
MalI GATC 3 cut(s) 894, 1288, 1904
MboI GATC 3 cut(s) 892, 1286, 1902
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 2 cut(s) 1286, 1902
MhlI GDGCHC 4 cut(s) 590, 766, 877, 2098
MluCI AATT 6 cut(s) 179, 356, 384, 977, 1011, 1497
MlyI GAGTC 1 cut(s) 1758
MmeI TCCRAC 4 cut(s) 321, 523, 1561, 1933
Mph1103I ATGCAT 1 cut(s) 415
MroI TCCGGA 2 cut(s) 82, 109
MseI TTAA 4 cut(s) 1433, 1664, 1965, 2136
MslI CAYNNNNRTG 4 cut(s) 728, 932, 1677, 2013
MspA1I CMGCKG 1 cut(s) 1442
MspI CCGG 3 cut(s) 83, 110, 1418
MspR9I CCNGG 6 cut(s) 259, 1314, 1331, 1418, 1423, 1529
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 2 cut(s) 594, 1134
MvaI CCWGG 5 cut(s) 259, 1314, 1331, 1423, 1529
MwoI GCNNNNNNNGC 7 cut(s) 223, 1013, 1022, 1323, 1567, 1597, 2190
NciI CCSGG 1 cut(s) 1418
NdeII GATC 3 cut(s) 892, 1286, 1902
NlaIV GGNNCC 7 cut(s) 101, 342, 588, 993, 1053, 2096, 2131
NmuCI GTSAC 6 cut(s) 37, 808, 1065, 2042, 2108, 2218
NsbI TGCGCA 1 cut(s) 1919
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 3 cut(s) 449, 512, 953
NspV TTCGAA 1 cut(s) 1910
PagI TCATGA 1 cut(s) 2008
PaqCI CACCTGC 1 cut(s) 1276
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 2 cut(s) 594, 1134
PfeI GAWTC 7 cut(s) 188, 202, 287, 907, 937, 1125, 1651
PflFI GACNNNGTC 1 cut(s) 2121
PflMI CCANNNNNTGG 2 cut(s) 1493, 1778
PleI GAGTC 1 cut(s) 1758
PpsI GAGTC 1 cut(s) 1758
Ppu21I YACGTR 1 cut(s) 394
Psp6I CCWGG 5 cut(s) 257, 1312, 1329, 1421, 1527
PspEI GGTNACC 2 cut(s) 1143, 1852
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 5 cut(s) 257, 1312, 1329, 1421, 1527
PspN4I GGNNCC 7 cut(s) 101, 342, 588, 993, 1053, 2096, 2131
PspOMI GGGCCC 2 cut(s) 586, 2094
PspPI GGNCC 6 cut(s) 586, 587, 1452, 1688, 2094, 2095
PsuI RGATCY 2 cut(s) 1286, 1902
PsyI GACNNNGTC 1 cut(s) 2121
PvuII CAGCTG 1 cut(s) 1442
RsaI GTAC 5 cut(s) 101, 465, 534, 948, 1613
RsaNI GTAC 5 cut(s) 100, 464, 533, 947, 1612
RseI CAYNNNNRTG 4 cut(s) 728, 932, 1677, 2013
SaqAI TTAA 4 cut(s) 1433, 1664, 1965, 2136
Sau3AI GATC 3 cut(s) 892, 1286, 1902
Sau96I GGNCC 6 cut(s) 586, 587, 1452, 1688, 2094, 2095
SchI GAGTC 1 cut(s) 1758
ScrFI CCNGG 6 cut(s) 259, 1314, 1331, 1418, 1423, 1529
SduI GDGCHC 4 cut(s) 590, 766, 877, 2098
SfaNI GCATC 9 cut(s) 256, 298, 400, 481, 664, 1162, 1789, 1893, 1905
SfcI CTRYAG 1 cut(s) 1026
SfuI TTCGAA 1 cut(s) 1910
SmiMI CAYNNNNRTG 4 cut(s) 728, 932, 1677, 2013
SpeI ACTAGT 1 cut(s) 943
Sse9I AATT 6 cut(s) 179, 356, 384, 977, 1011, 1497
SsiI CCGC 9 cut(s) 770, 989, 1008, 1180, 1450, 1559, 2076, 2177, 2210
SspI AATATT 1 cut(s) 1576
SspMI CTAG 4 cut(s) 944, 986, 1275, 1346
StyD4I CCNGG 6 cut(s) 257, 1312, 1329, 1416, 1421, 1527
StyI CCWWGG 1 cut(s) 2236
TaaI ACNGT 4 cut(s) 328, 1030, 2048, 2262
TaiI ACGT 2 cut(s) 396, 1822
TaqI TCGA 7 cut(s) 442, 726, 888, 1204, 1684, 1762, 1910
TasI AATT 6 cut(s) 179, 356, 384, 977, 1011, 1497
TatI WGTACW 1 cut(s) 946
TauI GCSGC 2 cut(s) 1010, 1453
TfiI GAWTC 7 cut(s) 188, 202, 287, 907, 937, 1125, 1651
Tru1I TTAA 4 cut(s) 1433, 1664, 1965, 2136
Tru9I TTAA 4 cut(s) 1433, 1664, 1965, 2136
TscAI CASTG 4 cut(s) 369, 465, 580, 2265
TseFI GTSAC 6 cut(s) 37, 808, 1065, 2042, 2108, 2218
TseI GCWGC 9 cut(s) 226, 428, 1081, 1242, 1326, 1349, 1388, 1442, 2054
Tsp45I GTSAC 6 cut(s) 37, 808, 1065, 2042, 2108, 2218
TspDTI ATGAA 9 cut(s) 255, 462, 668, 737, 936, 950, 1061, 1386, 1859
TspGWI ACGGA 1 cut(s) 1739
TspRI CASTG 4 cut(s) 369, 465, 580, 2265
Tth111I GACNNNGTC 1 cut(s) 2121
Van91I CCANNNNNTGG 2 cut(s) 1493, 1778
VneI GTGCAC 1 cut(s) 873
XapI RAATTY 2 cut(s) 384, 1497
XceI RCATGY 3 cut(s) 449, 512, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 4 cut(s) 944, 986, 1275, 1346
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.