Rorug02G0401300

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006899
Physical Location & Seq
Forward (+)
51238428 .. 51239150
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0401300.1

Sequence Viewer

Length: 462 bp
ATGTCACTCACAGCTTCACTCCTCCCCTTCTCTCCCACCAAGCTCTCAACCCAATTCATCCATGGCTCAACTCCTCTCACTCTCCTCTCCAAACCCACTTCCTCTCTCTCCTTCCCAACCCCACTACGCCACACCTTCCTCCAACCCATCAAGGCCCTCAAGTACCTTCAAGGCCGAGTCGTCTGCTCCACCAACGACAAGACCGTCGCCGTGGAGGTCACTCGCTTAGCCCCTCACCCAAAGTACAAGAGGAGGGTCAGGAAGAAGAAGAAGTACCAGGCCCATGACCCGGATAACCAGTTCGAGGTCGGCGACGTGGTCCAGCTTGAGAAGAGCAGACCCATCAGCAAGACCAAGACTTTCATTGCCGTGCCACTTCCGCCGAAGAATGCGAAGAAGAAATCCGGGGAGGAAGACGCGCCGAAGGAGCTTGGGATTTCTTTGGAGTCTCAGCAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

153

Amino Acids

17.06

Weight (kDa)

10.08

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 58 - 123 1.3e-25 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 445
AccII CGCG 1 cut(s) 419
AciI CCGC 1 cut(s) 380
AfaI GTAC 3 cut(s) 164, 245, 275
AfiI CCNNNNNNNGG 2 cut(s) 289, 304
AgsI TTSAA 1 cut(s) 170
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 276
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 4 cut(s) 14, 43, 325, 430
AluI AGCT 4 cut(s) 14, 43, 325, 430
Alw26I GTCTC 1 cut(s) 453
AoxI GGCC 3 cut(s) 153, 172, 279
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 154, 280, 319
AsuC2I CCSGG 2 cut(s) 290, 406
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbsI GAAGAC 1 cut(s) 420
BccI CCATC 2 cut(s) 155, 350
BceAI ACGGC 2 cut(s) 194, 353
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 2 cut(s) 290, 406
BcoDI GTCTC 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 445
BlpI GCTNAGC 1 cut(s) 226
Bme1390I CCNGG 3 cut(s) 278, 290, 406
Bme18I GGWCC 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 3 cut(s) 154, 280, 319
BmrFI CCNGG 3 cut(s) 278, 290, 406
BpiI GAAGAC 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 143, 347
BpuMI CCSGG 2 cut(s) 290, 406
BsaJI CCNNGG 3 cut(s) 61, 210, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 304
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 61, 210, 405
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 289, 304
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 4 cut(s) 11, 63, 74, 265
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 3 cut(s) 155, 174, 281
BsiSI CCGG 2 cut(s) 290, 405
BslI CCNNNNNNNGG 2 cut(s) 289, 304
BsmAI GTCTC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 155, 174, 281
Bsp1720I GCTNAGC 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 1 cut(s) 380
BspANI GGCC 3 cut(s) 155, 174, 281
BspFNI CGCG 1 cut(s) 419
BspMI ACCTGC 1 cut(s) 445
BspQI GCTCTTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 61, 210, 405
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 226, 450
BstDSI CCRYGG 2 cut(s) 61, 210
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 379, 427
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 276, 288, 404
BstUI CGCG 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 420
BsuRI GGCC 3 cut(s) 155, 174, 281
BtgI CCRYGG 2 cut(s) 61, 210
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 3 cut(s) 154, 280, 319
CseI GACGC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 163, 244, 274
CviAII CATG 2 cut(s) 62, 284
CviJI RGCY 9 cut(s) 14, 43, 66, 155, 174, 230, 281, 325, 430
CviKI_1 RGCY 9 cut(s) 14, 43, 66, 155, 174, 230, 281, 325, 430
CviQI GTAC 3 cut(s) 163, 244, 274
DdeI CTNAG 2 cut(s) 226, 450
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 2 cut(s) 65, 287
FaiI YATR 2 cut(s) 63, 285
FatI CATG 2 cut(s) 61, 283
FokI GGATG 1 cut(s) 44
GlaI GCGC 1 cut(s) 420
HaeIII GGCC 3 cut(s) 155, 174, 281
HapII CCGG 2 cut(s) 290, 405
HgaI GACGC 1 cut(s) 425
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 65, 287
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 2 cut(s) 177, 446
HpaII CCGG 2 cut(s) 290, 405
HphI GGTGA 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 209, 317
HpyAV CCTTC 5 cut(s) 37, 121, 145, 176, 418
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 427
HpyF3I CTNAG 2 cut(s) 226, 450
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 65, 287
HspAI GCGC 1 cut(s) 419
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 2 cut(s) 191, 427
LpnPI CCDG 8 cut(s) 244, 263, 290, 303, 311, 335, 418, 440
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 3, 217
MboII GAAGA 8 cut(s) 274, 277, 280, 343, 397, 406, 409, 425
MluCI AATT 1 cut(s) 53
MlyI GAGTC 2 cut(s) 186, 455
MmeI TCCRAC 1 cut(s) 166
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 2 cut(s) 290, 405
MspR9I CCNGG 3 cut(s) 278, 290, 406
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 379, 427
NciI CCSGG 2 cut(s) 290, 406
NcoI CCATGG 1 cut(s) 61
NlaIII CATG 2 cut(s) 65, 287
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 2 cut(s) 3, 217
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 309
PctI GAATGC 1 cut(s) 394
PflFI GACNNNGTC 1 cut(s) 317
PleI GAGTC 2 cut(s) 185, 454
PpsI GAGTC 2 cut(s) 185, 454
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspPI GGNCC 3 cut(s) 154, 280, 319
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 3 cut(s) 164, 245, 275
RsaNI GTAC 3 cut(s) 163, 244, 274
RseI CAYNNNNRTG 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 326
Sau96I GGNCC 3 cut(s) 154, 280, 319
SchI GAGTC 2 cut(s) 186, 455
ScrFI CCNGG 3 cut(s) 278, 290, 406
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 158, 326
SmoI CTYRAG 2 cut(s) 158, 326
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 380
StyD4I CCNGG 3 cut(s) 276, 288, 404
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 53
TatI WGTACW 1 cut(s) 243
TseFI GTSAC 2 cut(s) 3, 217
Tsp45I GTSAC 2 cut(s) 3, 217
TspDTI ATGAA 2 cut(s) 46, 352
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.