Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

8545139 .. 8548085

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAATCCGACGCAGAAGACACCAAGTCTCAATTGACCCAAAACCAAGACCCATCGGCACCAAAGCACAAACACAAGAAGAGGAAGACGAAGAAAACCGCCGTCCCAACCATTCCAACATTCCAAGCCGCCGTCCAAGTTTTCCCGGAACACCCAGAAAAAACCCCACCTATAGTGGCCCATTTCTCATCTGGGTTCGACCCCACCAAGAACCCAGACCCTAATTCGACCAAAATCGGACTCTTTCGGAACGCCAACCGAACCAAACGAGTGGAGCTTGTGGTGCACCCGGATGGGACCAATGTCGATTTTGTTGGAACTAGCTATACTGGTGCGGCCACCAGTGACCAGTACTGCAATTATGCACTTGGTGTTCTAGATAAGGCCACCCAGACTTTGAAGATTACGCCCCTTGTTTCTAACAAGATATTTAGATTAGAACCAAAAGTTAGAGGGTATAACTACTCTGATAAGGAACCTGCAAGTTCAGCAATGGGAGAACTTACTGCACAAGAGAAGGCAGAGAAGCAGATGCAGCTACATAATCTATATGGAACAAAGAAGTCTATTAGGGAGAGTAAGAAAATGCAGTCCTTGAAGCAAGCAGATGGTCCTGATTCTCTAAACGATTTGGATGCCAAAATGAAACAGATTGTGGTAAACAAGGAGGCTCTTGAAAGCGCTGAAACCCAAAGCTCTCGCCATATCCCACCATTTAATGAATCTGCCACTACTCCACAGGAGGCTTATCCACTAGACAAGATCGATCATCACAGGAGAGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

263

Amino Acids

29.14

Weight (kDa)

9.16

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_I_A49	PF06870	74 - 255	1.9e-22	A49-like RNA polymerase I associated factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	58
AciI	CCGC	3 cut(s)	99, 129, 335
AcoI	YGGCCR	1 cut(s)	336
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	353
AfeI	AGCGCT	1 cut(s)	682
AgsI	TTSAA	3 cut(s)	400, 598, 677
AhdI	GACNNNNNGTC	1 cut(s)	25
AluBI	AGCT	4 cut(s)	277, 324, 538, 696
AluI	AGCT	4 cut(s)	277, 324, 538, 696
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	284
Aor51HI	AGCGCT	1 cut(s)	682
AoxI	GGCC	3 cut(s)	177, 336, 384
ApaLI	GTGCAC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	178, 297, 611
AsuC2I	CCSGG	2 cut(s)	146, 290
AvaII	GGWCC	2 cut(s)	297, 611
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	58
BbsI	GAAGAC	2 cut(s)	24, 92
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	61, 287, 602
BceAI	ACGGC	2 cut(s)	86, 116
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BcnI	CCSGG	2 cut(s)	146, 290
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	3 cut(s)	321, 377, 755
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	129, 336, 536
BlsI	GCNGC	3 cut(s)	130, 337, 537
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	146, 290
Bme18I	GGWCC	2 cut(s)	297, 611
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	178, 297, 611
BmiI	GGNNCC	3 cut(s)	60, 298, 477
BmrFI	CCNGG	2 cut(s)	146, 290
BmsI	GCATC	2 cut(s)	522, 625
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	24, 92
BpuMI	CCSGG	2 cut(s)	146, 290
Bsa29I	ATCGAT	1 cut(s)	765
Bse1I	ACTGG	3 cut(s)	334, 342, 349
Bse3DI	GCAATG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	765
BseGI	GGATG	2 cut(s)	298, 640
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	3 cut(s)	334, 342, 349
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	3 cut(s)	179, 338, 386
BshNI	GGYRCC	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	146, 290
BslFI	GGGAC	2 cut(s)	89, 310
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	89, 310
BsnI	GGCC	3 cut(s)	179, 338, 386
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	762, 766
BspACI	CCGC	3 cut(s)	99, 129, 335
BspANI	GGCC	3 cut(s)	179, 338, 386
BspDI	ATCGAT	1 cut(s)	765
BspLI	GGNNCC	3 cut(s)	60, 298, 477
BspMI	ACCTGC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	334, 342, 349
BssMI	GATC	2 cut(s)	762, 766
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	298, 640
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	2 cut(s)	765, 769
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	762, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 488, 535
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	144, 288
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	2 cut(s)	24, 92
BstXI	CCANNNNNNTGG	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	179, 338, 386
BsuTUI	ATCGAT	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	298, 640
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	603
CfoI	GCGC	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	178, 297, 611
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	352
CviQI	GTAC	1 cut(s)	352
DpnI	GATC	2 cut(s)	764, 768
DpnII	GATC	2 cut(s)	762, 766
DraIII	CACNNNGTG	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	297, 611
Eco47III	AGCGCT	1 cut(s)	682
FaiI	YATR	8 cut(s)	173, 327, 363, 459, 543, 550, 552, 705
FaqI	GGGAC	2 cut(s)	89, 310
Fnu4HI	GCNGC	3 cut(s)	129, 336, 536
FokI	GGATG	2 cut(s)	305, 647
Fsp4HI	GCNGC	3 cut(s)	129, 336, 536
FspBI	CTAG	3 cut(s)	321, 377, 755
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	3 cut(s)	129, 336, 536
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	179, 338, 386
HapII	CCGG	2 cut(s)	146, 290
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	683
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HinfI	GANTC	4 cut(s)	5, 240, 617, 722
HpaII	CCGG	2 cut(s)	146, 290
Hpy166II	GTNNAC	2 cut(s)	286, 661
Hpy188I	TCNGA	4 cut(s)	10, 239, 249, 469
Hpy188III	TCNNGA	3 cut(s)	377, 614, 674
Hpy8I	GTNNAC	2 cut(s)	286, 661
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	511
HpyCH4V	TGCA	7 cut(s)	286, 357, 365, 482, 509, 535, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 488, 535
HspAI	GCGC	1 cut(s)	681
Kzo9I	GATC	2 cut(s)	762, 766
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	2 cut(s)	522, 625
MaeI	CTAG	3 cut(s)	321, 377, 755
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	764, 768
MboI	GATC	2 cut(s)	762, 766
MboII	GAAGA	5 cut(s)	29, 91, 97, 103, 412
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	32, 223, 358
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	3 cut(s)	33, 140, 295
MnlI	CCTC	4 cut(s)	75, 446, 661, 736
MseI	TTAA	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	2 cut(s)	146, 290
MspR9I	CCNGG	2 cut(s)	146, 290
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	283, 488, 535
NciI	CCSGG	2 cut(s)	146, 290
NdeII	GATC	2 cut(s)	762, 766
NlaIV	GGNNCC	3 cut(s)	60, 298, 477
NmuCI	GTSAC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	5, 617, 722
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	130, 337, 537
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PshAI	GACNNNNGTC	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	60, 298, 477
PspPI	GGNCC	3 cut(s)	178, 297, 611
PsrI	GAACNNNNNNTAC	2 cut(s)	310, 342
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	3 cut(s)	129, 336, 536
Sau3AI	GATC	2 cut(s)	762, 766
Sau96I	GGNCC	3 cut(s)	178, 297, 611
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	146, 290
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	172, 279, 326, 481, 540, 698
SfaNI	GCATC	2 cut(s)	522, 625
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	297, 611
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	3 cut(s)	32, 223, 358
SsiI	CCGC	3 cut(s)	99, 129, 335
SspMI	CTAG	3 cut(s)	321, 377, 755
StyD4I	CCNGG	2 cut(s)	144, 288
TaqI	TCGA	4 cut(s)	198, 227, 306, 765
TasI	AATT	3 cut(s)	32, 223, 358
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	131, 338
TfiI	GAWTC	3 cut(s)	5, 617, 722
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	659, 735
TspRI	CASTG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	297, 611
XbaI	TCTAGA	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	3 cut(s)	321, 377, 755
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.