Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005588

Physical Location & Seq

Genomic Coordinates Forward (+)

15155217 .. 15157222

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGTCTTATTCCAGGTTCTTGGAGTATCTGGACAAGGGCAGGGTGACTAAAGTTGATTTGTTTGAGAATGGAACCATTGCTATTGTTGAGGCTGTTTCTCCTGAGTTAGGGAACCGATTGCAGCGGGTTCGTGTTCAACTTCCGGGGCTAAGCCAAGAGCTCCTCCAGAAGTTCAGGGAAAAGAACATCGACTTTGCAGCACATAATGCTCAAGAAGACTCGGGCTCTCTTTTATTTAACCTGATTGGAAATCTTGCTTTCCCACTAATTTTAATTGGGGGCTTGTTCCTACTCTCAAGGCGTTCATCCGGGGGCATGGGTGGTCCAGGTGGGCCTGGATTTCCCCTACAATTTGGTCAATCTAAAGCCAAGTTCCAAATGGAACCAAACACCGGAGTGACATTCGATGATGTTGCTGGGGTAGATGAAGCCAAGCAAGATTTCGTGGAGGTGGTCGAGTTCTTAAAGAAGCCTGAGAGGTTCACAGCTGTTGGGGCTCGAATTCCTAAAGGGGTTCTTCTTGTTGGCCCTCCGGGAACCGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCTGGTGTTCCATTTTTCTCCATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCCCGAGTTTGTGATCTTTTTAAGAAGGCCAAGGAGAATGCACCTTGCATTGTATTTGTTGATGAAATTGACGCTGTTGGACGGCAAAGAGGAACTGGAATTGGTGGAGGGAACGATGAAAGGGAACAAACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGCAACACTGGTATCATCGTGGTTGCAGCGACTAACAGGGCAGATATTCTTGACTCTGCCTTACTGAGGCCTGGCCGGTTTGACAGGCAGGTGTCTGTTGATGTCCCAGACATTCGAGGAAGAACAGAGATCTTAAAGGTTCATGCTAGCAATAAGAAGTTTGATGGAAGTGTTTCTCTTGATGTTGTAGCCATGAGGACACCTGGCTTCAGTGGGGCTGATCTCGCAAACCTCCTTAATGAAGCAGCTATATTGGCTGGTCGACGTGGGAAGTCAGCAATTTCATCTAAAGAGATTGATGATTCGATTGATAGAATAGTGGCTGGAATGGAAGGAACAGTAATGACAGATGGAAAGAGTAAAAGTTTGGTGGCATATCATGAAGTTGGGCATGCCATCTGTGGGACATTGACTCCAGGGCATGATGCTGTTCAAAAGGTGACATTAGTCCCTCGTGGTCAGGCTCGGGGTCTTACATGGTTTATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTGTTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCCGCAGAGGAAGTGATCTTTGGCGAGCCTGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCAGATCACTGGTTTGGCCAAACAGATGGTCACCACCTTCGGAATGTCTGATATTGGACCATGGTCATTGATGGACGCATCTCAGAGCGGTGACGTCATTATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATACAGCTATTAAGAGATTATCAGATGAAGCATATGAGATTGCGTTGACCCACATAAGAAACAACCGCGAAGCCATTGACAAGATCGTGGAGGTCCTTCTTGAAAAGGAAACAATGACCGGGGATGAATTCCGGGCACTGCTATCCGAATTCGCTGAAATCCCAGTTGAAAACCGGGTCCCTGCTGCAGTTCCGTCGCCTGTAGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

598

Amino Acids

64.02

Weight (kDa)

5.15

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	1 - 67	7.1e-06	FtsH Extracellular
AAA	PF00004	172 - 304	4.9e-45	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	327 - 370	1.6e-12	AAA+ lid domain
Peptidase_M41	PF01434	386 - 573	1.6e-67	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06430 AT1G06430 AT1G06430 AT2G30950 AT2G30950 AT2G30950 AT2G30950
fragaria_vesca	FvH4_6g27780 FvH4_6g27780 FvH4_6g27780
malus_domestica	MD09G1234500.v1.1 MD17G1263600.v1.1
prunus_persica	Prupe.3G112700_v2.0.a1 Prupe.3G112700_v2.0.a1
pyrus_communis	pycom09g15280 pycom17g26380
rosa_chinensis	RchiOBHm_Chr2g0131061
rosa_roxburghii	Rroxscaffold_2G00113260
rosa_samantha	Rh2AG347000 Rh2AG479700 Rh2BG354500 Rh2BG461700 Rh2CG333000 Rh2DG372500 Rh2DG470900
rosa_wichuraiana	Rw2G028140 Rw2G028180 Rw4G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	889
AatII	GACGTC	1 cut(s)	1527
Acc36I	ACCTGC	1 cut(s)	889
AccBSI	CCGCTC	1 cut(s)	1518
AccI	GTMKAC	1 cut(s)	1072
AccII	CGCG	1 cut(s)	1650
AciI	CCGC	4 cut(s)	124, 1371, 1518, 1648
AclWI	GGATC	1 cut(s)	1301
AcoI	YGGCCR	2 cut(s)	883, 1446
AcsI	RAATTY	3 cut(s)	501, 1709, 1730
AcuI	CTGAAG	2 cut(s)	1003, 1593
AcyI	GRCGYC	1 cut(s)	1524
AfiI	CCNNNNNNNGG	5 cut(s)	107, 392, 539, 876, 1212
AgsI	TTSAA	5 cut(s)	137, 620, 1244, 1685, 1751
AjiI	CACGTC	1 cut(s)	1076
AjnI	CCWGG	6 cut(s)	11, 325, 334, 880, 1012, 1225
AjuI	GAANNNNNNNTTGG	6 cut(s)	425, 457, 612, 644, 1371, 1403
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	9 cut(s)	160, 488, 578, 784, 1058, 1418, 1567, 1589, 1787
AluI	AGCT	9 cut(s)	160, 488, 578, 784, 1058, 1418, 1567, 1589, 1787
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	1301
AlwNI	CAGNNNCTG	2 cut(s)	608, 1333
Ama87I	CYCGRG	3 cut(s)	220, 645, 1275
AoxI	GGCC	6 cut(s)	332, 526, 669, 878, 883, 1446
ApeKI	GCWGC	8 cut(s)	121, 197, 836, 1055, 1327, 1415, 1429, 1766
ApoI	RAATTY	3 cut(s)	501, 1709, 1730
ArsI	GACNNNNNNTTYG	2 cut(s)	1443, 1475
Asp700I	GAANNNNTTC	1 cut(s)	982
AspS9I	GGNCC	6 cut(s)	323, 332, 527, 1487, 1675, 1759
AsuC2I	CCSGG	6 cut(s)	144, 310, 534, 1702, 1715, 1757
AsuHPI	GGTGA	7 cut(s)	55, 584, 1261, 1414, 1433, 1453, 1532
AsuNHI	GCTAGC	2 cut(s)	553, 956
AvaI	CYCGRG	3 cut(s)	220, 645, 1275
AvaII	GGWCC	4 cut(s)	323, 1487, 1675, 1759
AxyI	CCTNAGG	1 cut(s)	1398
BaeGI	GKGCMC	1 cut(s)	1720
BaeI	ACNNNNGTAYC	2 cut(s)	805, 838
BalI	TGGCCA	1 cut(s)	1448
BanII	GRGCYC	3 cut(s)	162, 227, 499
BauI	CACGAG	1 cut(s)	1263
BbsI	GAAGAC	2 cut(s)	222, 1581
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	8 cut(s)	133, 209, 848, 1067, 1339, 1427, 1441, 1753
BccI	CCATC	8 cut(s)	605, 794, 968, 1154, 1214, 1450, 1495, 1534
BceAI	ACGGC	1 cut(s)	740
BcgI	CGANNNNNNTGC	6 cut(s)	110, 144, 395, 429, 1758, 1792
BciT130I	CCWGG	6 cut(s)	13, 327, 336, 882, 1014, 1227
BcnI	CCSGG	6 cut(s)	144, 310, 534, 1702, 1715, 1757
BfaI	CTAG	2 cut(s)	554, 957
BfmI	CTRYAG	3 cut(s)	1299, 1767, 1782
BfuAI	ACCTGC	1 cut(s)	889
BglII	AGATCT	1 cut(s)	939
BisI	GCNGC	9 cut(s)	122, 198, 837, 1056, 1328, 1371, 1416, 1430, 1767
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	9 cut(s)	123, 199, 838, 1057, 1329, 1372, 1417, 1431, 1768
Bme18I	GGWCC	4 cut(s)	323, 1487, 1675, 1759
BmeT110I	CYCGRG	3 cut(s)	220, 645, 1275
BmgBI	CACGTC	1 cut(s)	1076
BmgT120I	GGNCC	6 cut(s)	323, 332, 527, 1487, 1675, 1759
BmiI	GGNNCC	6 cut(s)	73, 113, 384, 538, 1760, 1761
BmrI	ACTGGG	1 cut(s)	1739
BmsI	GCATC	2 cut(s)	1225, 1517
BmtI	GCTAGC	2 cut(s)	557, 960
BmuI	ACTGGG	1 cut(s)	1739
BoxI	GACNNNNGTC	2 cut(s)	1256, 1492
BpiI	GAAGAC	2 cut(s)	222, 1581
BpmI	CTGGAG	2 cut(s)	149, 1209
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	195, 280
BpuMI	CCSGG	6 cut(s)	144, 310, 534, 1702, 1715, 1757
BsaHI	GRCGYC	1 cut(s)	1524
BsaJI	CCNNGG	6 cut(s)	143, 309, 672, 1226, 1490, 1701
BsaWI	WCCGGW	2 cut(s)	392, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	1207, 1237
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 392, 539, 876, 1212
Bse118I	RCCGGY	1 cut(s)	885
Bse1I	ACTGG	4 cut(s)	742, 823, 1444, 1745
Bse21I	CCTNAGG	1 cut(s)	1398
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	6 cut(s)	13, 327, 336, 882, 1014, 1227
BseDI	CCNNGG	6 cut(s)	143, 309, 672, 1226, 1490, 1701
BseGI	GGATG	3 cut(s)	305, 805, 1711
BseLI	CCNNNNNNNGG	5 cut(s)	107, 392, 539, 876, 1212
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	7 cut(s)	93, 465, 600, 615, 866, 1389, 1526
BseNI	ACTGG	4 cut(s)	742, 823, 1444, 1745
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	1720
BseXI	GCAGC	8 cut(s)	133, 209, 848, 1067, 1339, 1427, 1441, 1753
BseYI	CCCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	1434
Bsh1236I	CGCG	1 cut(s)	1650
BshFI	GGCC	6 cut(s)	334, 528, 671, 880, 885, 1448
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	3 cut(s)	220, 645, 1275
BsiSI	CCGG	9 cut(s)	143, 309, 393, 533, 540, 886, 1701, 1714, 1756
BslFI	GGGAC	4 cut(s)	899, 1228, 1244, 1745
BslI	CCNNNNNNNGG	5 cut(s)	107, 392, 539, 876, 1212
BsmFI	GGGAC	4 cut(s)	899, 1228, 1244, 1745
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	6 cut(s)	334, 528, 671, 880, 885, 1448
BsoBI	CYCGRG	3 cut(s)	220, 645, 1275
Bsp1286I	GDGCHC	4 cut(s)	162, 227, 499, 1720
Bsp143I	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
Bsp1720I	GCTNAGC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	1490
BspACI	CCGC	4 cut(s)	124, 1371, 1518, 1648
BspANI	GGCC	6 cut(s)	334, 528, 671, 880, 885, 1448
BspCNI	CTCAG	7 cut(s)	94, 466, 601, 614, 867, 1390, 1525
BspFNI	CGCG	1 cut(s)	1650
BspHI	TCATGA	1 cut(s)	1189
BspLI	GGNNCC	6 cut(s)	73, 113, 384, 538, 1760, 1761
BspMAI	CTGCAG	2 cut(s)	1303, 1771
BspMI	ACCTGC	1 cut(s)	889
BspOI	GCTAGC	2 cut(s)	557, 960
BspPI	GGATC	1 cut(s)	1301
BsrBI	CCGCTC	1 cut(s)	1518
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	885
BsrI	ACTGG	4 cut(s)	742, 823, 1444, 1745
BssAI	RCCGGY	1 cut(s)	885
BssECI	CCNNGG	6 cut(s)	143, 309, 672, 1226, 1490, 1701
BssMI	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
BssNI	GRCGYC	1 cut(s)	1524
BssSI	CACGAG	1 cut(s)	1263
BssT1I	CCWWGG	2 cut(s)	672, 1490
Bst2BI	CACGAG	1 cut(s)	1263
Bst2UI	CCWGG	6 cut(s)	13, 327, 336, 882, 1014, 1227
Bst4CI	ACNGT	2 cut(s)	1150, 1335
BstACI	GRCGYC	1 cut(s)	1524
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	5 cut(s)	555, 958, 1203, 1394, 1569
BstDEI	CTNAG	8 cut(s)	102, 149, 474, 601, 609, 875, 1398, 1512
BstDSI	CCRYGG	1 cut(s)	1490
BstEII	GGTNACC	1 cut(s)	1459
BstENI	CCTNNNNNAGG	2 cut(s)	105, 874
BstF5I	GGATG	3 cut(s)	305, 805, 1711
BstFNI	CGCG	1 cut(s)	1650
BstKTI	GATC	8 cut(s)	658, 942, 1033, 1309, 1320, 1386, 1437, 1668
BstMBI	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 494, 575, 1034, 1064
BstNI	CCWGG	6 cut(s)	13, 327, 336, 882, 1014, 1227
BstNSI	RCATGY	1 cut(s)	1205
BstPAI	GACNNNNGTC	2 cut(s)	1256, 1492
BstPI	GGTNACC	1 cut(s)	1459
BstSFI	CTRYAG	3 cut(s)	1299, 1767, 1782
BstSLI	GKGCMC	1 cut(s)	1720
BstUI	CGCG	1 cut(s)	1650
BstV1I	GCAGC	8 cut(s)	133, 209, 848, 1067, 1339, 1427, 1441, 1753
BstV2I	GAAGAC	2 cut(s)	222, 1581
BstX2I	RGATCY	1 cut(s)	939
BstXI	CCANNNNNNTGG	2 cut(s)	19, 1456
BstYI	RGATCY	1 cut(s)	939
Bsu36I	CCTNAGG	1 cut(s)	1398
BsuRI	GGCC	6 cut(s)	334, 528, 671, 880, 885, 1448
BtgI	CCRYGG	1 cut(s)	1490
BtrI	CACGTC	1 cut(s)	1076
BtsCI	GGATG	3 cut(s)	305, 805, 1711
BtsI	GCAGTG	1 cut(s)	1718
BtsIMutI	CAGTG	4 cut(s)	816, 1027, 1437, 1718
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	5 cut(s)	555, 958, 1203, 1394, 1569
CaiI	CAGNNNCTG	2 cut(s)	608, 1333
CciI	TCATGA	1 cut(s)	1189
Cfr10I	RCCGGY	1 cut(s)	885
Cfr13I	GGNCC	6 cut(s)	323, 332, 527, 1487, 1675, 1759
CseI	GACGC	2 cut(s)	722, 1514
CviAII	CATG	8 cut(s)	316, 953, 1003, 1190, 1202, 1232, 1287, 1491
DdeI	CTNAG	8 cut(s)	102, 149, 474, 601, 609, 875, 1398, 1512
DpnI	GATC	8 cut(s)	657, 941, 1032, 1308, 1319, 1385, 1436, 1667
DpnII	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
EaeI	YGGCCR	2 cut(s)	883, 1446
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	672, 1490
Eco147I	AGGCCT	1 cut(s)	880
Eco24I	GRGCYC	3 cut(s)	162, 227, 499
Eco47I	GGWCC	4 cut(s)	323, 1487, 1675, 1759
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	1003, 1593
Eco81I	CCTNAGG	1 cut(s)	1398
Eco88I	CYCGRG	3 cut(s)	220, 645, 1275
Eco91I	GGTNACC	1 cut(s)	1459
EcoICRI	GAGCTC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	2 cut(s)	105, 874
EcoO109I	RGGNCCY	2 cut(s)	1675, 1759
EcoO65I	GGTNACC	1 cut(s)	1459
EcoRI	GAATTC	3 cut(s)	501, 1709, 1730
EcoRII	CCWGG	6 cut(s)	11, 325, 334, 880, 1012, 1225
EcoT14I	CCWWGG	2 cut(s)	672, 1490
EcoT38I	GRGCYC	3 cut(s)	162, 227, 499
ErhI	CCWWGG	2 cut(s)	672, 1490
FaeI	CATG	8 cut(s)	319, 956, 1006, 1193, 1205, 1235, 1290, 1494
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	4 cut(s)	899, 1228, 1244, 1745
FatI	CATG	8 cut(s)	315, 952, 1002, 1189, 1201, 1231, 1286, 1490
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	1615
FblI	GTMKAC	1 cut(s)	1072
Fnu4HI	GCNGC	9 cut(s)	122, 198, 837, 1056, 1328, 1371, 1416, 1430, 1767
FokI	GGATG	3 cut(s)	292, 812, 1718
FriOI	GRGCYC	3 cut(s)	162, 227, 499
Fsp4HI	GCNGC	9 cut(s)	122, 198, 837, 1056, 1328, 1371, 1416, 1430, 1767
FspBI	CTAG	2 cut(s)	554, 957
GluI	GCNGC	9 cut(s)	122, 198, 837, 1056, 1328, 1371, 1416, 1430, 1767
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	2 cut(s)	149, 1209
HaeIII	GGCC	6 cut(s)	334, 528, 671, 880, 885, 1448
HapII	CCGG	9 cut(s)	143, 309, 393, 533, 540, 886, 1701, 1714, 1756
HgaI	GACGC	2 cut(s)	722, 1514
Hin1I	GRCGYC	1 cut(s)	1524
Hin1II	CATG	8 cut(s)	319, 956, 1006, 1193, 1205, 1235, 1290, 1494
HincII	GTYRAC	2 cut(s)	1073, 1629
HindII	GTYRAC	2 cut(s)	1073, 1629
HindIII	AAGCTT	1 cut(s)	1565
HinfI	GANTC	5 cut(s)	218, 547, 863, 1112, 1222
HpaII	CCGG	9 cut(s)	143, 309, 393, 533, 540, 886, 1701, 1714, 1756
HphI	GGTGA	7 cut(s)	55, 584, 1261, 1414, 1433, 1453, 1532
Hpy166II	GTNNAC	3 cut(s)	483, 1073, 1629
Hpy188I	TCNGA	7 cut(s)	610, 1472, 1480, 1515, 1561, 1606, 1729
Hpy188III	TCNNGA	9 cut(s)	29, 101, 166, 212, 645, 860, 989, 1190, 1682
Hpy8I	GTNNAC	3 cut(s)	483, 1073, 1629
Hpy99I	CGWCG	2 cut(s)	1077, 1780
HpyAV	CCTTC	4 cut(s)	661, 1136, 1477, 1688
HpyCH4III	ACNGT	2 cut(s)	1150, 1335
HpyCH4IV	ACGT	2 cut(s)	1075, 1524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 494, 575, 1034, 1064
HpyF3I	CTNAG	8 cut(s)	102, 149, 474, 601, 609, 875, 1398, 1512
HpySE526I	ACGT	2 cut(s)	1075, 1524
Hsp92I	GRCGYC	1 cut(s)	1524
Hsp92II	CATG	8 cut(s)	319, 956, 1006, 1193, 1205, 1235, 1290, 1494
KflI	GGGWCCC	1 cut(s)	1759
Kzo9I	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	8 cut(s)	133, 209, 848, 1067, 1339, 1427, 1441, 1753
LweI	GCATC	2 cut(s)	1225, 1517
MaeI	CTAG	2 cut(s)	554, 957
MaeII	ACGT	2 cut(s)	1075, 1524
MaeIII	GTNAC	6 cut(s)	43, 397, 1249, 1402, 1459, 1520
MalI	GATC	8 cut(s)	657, 941, 1032, 1308, 1319, 1385, 1436, 1667
MbiI	CCGCTC	1 cut(s)	1518
MboI	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
MboII	GAAGA	4 cut(s)	227, 509, 942, 1586
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	939
MhlI	GDGCHC	4 cut(s)	162, 227, 499, 1720
MlsI	TGGCCA	1 cut(s)	1448
MluNI	TGGCCA	1 cut(s)	1448
MlyI	GAGTC	4 cut(s)	212, 541, 857, 1216
MmeI	TCCRAC	1 cut(s)	700
Mox20I	TGGCCA	1 cut(s)	1448
MroXI	GAANNNNTTC	1 cut(s)	982
MscI	TGGCCA	1 cut(s)	1448
MseI	TTAA	8 cut(s)	237, 272, 464, 663, 777, 944, 1047, 1593
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	1448
MspA1I	CMGCKG	3 cut(s)	124, 488, 1418
MspI	CCGG	9 cut(s)	143, 309, 393, 533, 540, 886, 1701, 1714, 1756
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	6 cut(s)	13, 327, 336, 882, 1014, 1227
MvnI	CGCG	1 cut(s)	1650
MwoI	GCNNNNNNNGC	5 cut(s)	206, 494, 575, 1034, 1064
NciI	CCSGG	6 cut(s)	144, 310, 534, 1702, 1715, 1757
NcoI	CCATGG	1 cut(s)	1490
NdeI	CATATG	1 cut(s)	1615
NdeII	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
NheI	GCTAGC	2 cut(s)	553, 956
NlaIII	CATG	8 cut(s)	319, 956, 1006, 1193, 1205, 1235, 1290, 1494
NlaIV	GGNNCC	6 cut(s)	73, 113, 384, 538, 1760, 1761
NmuCI	GTSAC	6 cut(s)	43, 397, 1249, 1402, 1459, 1520
NspI	RCATGY	1 cut(s)	1205
OliI	CACNNNNGTG	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	1205
PagI	TCATGA	1 cut(s)	1189
PaqCI	CACCTGC	1 cut(s)	889
PceI	AGGCCT	1 cut(s)	880
PctI	GAATGC	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	1 cut(s)	1112
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	9 cut(s)	123, 199, 838, 1057, 1329, 1372, 1417, 1431, 1768
PleI	GAGTC	4 cut(s)	212, 541, 857, 1216
PpsI	GAGTC	4 cut(s)	212, 541, 857, 1216
PpuMI	RGGWCCY	2 cut(s)	1675, 1759
PshAI	GACNNNNGTC	2 cut(s)	1256, 1492
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	2 cut(s)	1675, 1759
Psp6I	CCWGG	6 cut(s)	11, 325, 334, 880, 1012, 1225
PspEI	GGTNACC	1 cut(s)	1459
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	6 cut(s)	11, 325, 334, 880, 1012, 1225
PspN4I	GGNNCC	6 cut(s)	73, 113, 384, 538, 1760, 1761
PspPI	GGNCC	6 cut(s)	323, 332, 527, 1487, 1675, 1759
PspPPI	RGGWCCY	2 cut(s)	1675, 1759
PstI	CTGCAG	2 cut(s)	1303, 1771
PstNI	CAGNNNCTG	2 cut(s)	608, 1333
PsuI	RGATCY	1 cut(s)	939
PvuII	CAGCTG	2 cut(s)	488, 1418
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	1071
SaqAI	TTAA	8 cut(s)	237, 272, 464, 663, 777, 944, 1047, 1593
SatI	GCNGC	9 cut(s)	122, 198, 837, 1056, 1328, 1371, 1416, 1430, 1767
Sau3AI	GATC	8 cut(s)	655, 939, 1030, 1306, 1317, 1383, 1434, 1665
Sau96I	GGNCC	6 cut(s)	323, 332, 527, 1487, 1675, 1759
SchI	GAGTC	4 cut(s)	212, 541, 857, 1216
SduI	GDGCHC	4 cut(s)	162, 227, 499, 1720
SfaNI	GCATC	2 cut(s)	1225, 1517
SfcI	CTRYAG	3 cut(s)	1299, 1767, 1782
SinI	GGWCC	4 cut(s)	323, 1487, 1675, 1759
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	210, 295
SmoI	CTYRAG	2 cut(s)	210, 295
SphI	GCATGC	1 cut(s)	1205
SseBI	AGGCCT	1 cut(s)	880
SsiI	CCGC	4 cut(s)	124, 1371, 1518, 1648
SspMI	CTAG	2 cut(s)	554, 957
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	880
StyI	CCWWGG	2 cut(s)	672, 1490
TaaI	ACNGT	2 cut(s)	1150, 1335
TaiI	ACGT	2 cut(s)	1078, 1527
TaqI	TCGA	7 cut(s)	189, 405, 456, 499, 925, 1072, 1115
TauI	GCSGC	1 cut(s)	1373
TfiI	GAWTC	1 cut(s)	1112
Tru1I	TTAA	8 cut(s)	237, 272, 464, 663, 777, 944, 1047, 1593
Tru9I	TTAA	8 cut(s)	237, 272, 464, 663, 777, 944, 1047, 1593
TscAI	CASTG	4 cut(s)	823, 1027, 1444, 1725
TseFI	GTSAC	6 cut(s)	43, 397, 1249, 1402, 1459, 1520
TseI	GCWGC	8 cut(s)	121, 197, 836, 1055, 1327, 1415, 1429, 1766
Tsp45I	GTSAC	6 cut(s)	43, 397, 1249, 1402, 1459, 1520
TspGWI	ACGGA	1 cut(s)	1764
TspRI	CASTG	4 cut(s)	823, 1027, 1444, 1725
VpaK11BI	GGWCC	4 cut(s)	323, 1487, 1675, 1759
XagI	CCTNNNNNAGG	2 cut(s)	105, 874
XapI	RAATTY	3 cut(s)	501, 1709, 1730
XceI	RCATGY	1 cut(s)	1205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	1072
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	2 cut(s)	554, 957
ZraI	GACGTC	1 cut(s)	1525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.