Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004632

Physical Location & Seq

Genomic Coordinates Reverse (-)

18680524 .. 18681586

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCGTCTGCAGTTGAATTGCTGCCCAAAGAATACGGCTATGTAGTTCTCGCCGTCGTTCTCTACACCTTTCTCAATTTCTGGATGGCTGCCCAAGTTGGCCGGGCCAGAAAACGGTACAAGGTGCCATATCCGACCATGTATGCGTCGGAATCGGAGAACAAAGATGCGAACGTGTTTAACTGTGTTCAGAGAGGGCATCAGAACTCTCTCGAAATGATGCCTATGTTCTTTGTGCTTCTGGTCTTGGGAGGTCTTAAGCATCCTTGCATCTCCGCCGCCCTTGGCTTCTTCTTTGCTTTTACTCGCTACTTCTACTTCAAAGGCTACGCCACCGGTGACCCCATGAACCGCCTCGCCATCGGGAAATACGGGTTTTTGGCTATATTCGGGCTTATGGGGTGCACGATTTCGTTTGGGTTCAGTCTTCTTCTTCGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

MAPEG

Protein Analysis

148

Amino Acids

16.59

Weight (kDa)

9.45

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65820 AT1G65820 AT1G65820
fragaria_vesca	FvH4_1g30090
malus_domestica	MD09G1269000.v1.1 MD17G1267400.v1.1 MD17G1267600.v1.1
prunus_persica	Prupe.3G165500_v2.0.a1
pyrus_communis	pycom09g18090 pycom17g26650
rosa_chinensis	RchiOBHm_Chr3g0491671 RchiOBHm_Chr3g0491701 RchiOBHm_Chr3g0491741
rosa_laevigata	RLG00000022803 RLG00000022813 RLG00000022816 RLG00000022829
rosa_multiflora	Rmu_sc0001058.1_g000005 Rmu_sc0009763.1_g000005
rosa_roxburghii	Rroxscaffold_6G00392690 Rroxscaffold_6G00392710
rosa_rugosa	Rorug03G0250900
rosa_samantha	Rh3AG299700 Rh3AG299800 Rh3BG336500 Rh3CG332700 Rh3CG333700 Rh3DG334300 Rh3DG335700
rosa_wichuraiana	Rw3G026490 Rw3G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	3 cut(s)	276, 279, 352
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	17, 322
Alw21I	GWGCWC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	100, 105
ApaLI	GTGCAC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	22, 89
AsiGI	ACCGGT	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	9, 76
BccI	CCATC	2 cut(s)	79, 368
BceAI	ACGGC	2 cut(s)	38, 52
BcnI	CCSGG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	3 cut(s)	23, 90, 279
BlsI	GCNGC	3 cut(s)	24, 91, 280
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	5 cut(s)	157, 208, 210, 271, 279
BpiI	GAAGAC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	90, 262
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	9, 76
BshFI	GGCC	2 cut(s)	102, 107
BshNI	GGYRCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	103, 336
BslI	CCNNNNNNNGG	1 cut(s)	114
BsnI	GGCC	2 cut(s)	102, 107
Bsp1286I	GDGCHC	1 cut(s)	407
BspACI	CCGC	3 cut(s)	276, 279, 352
BspANI	GGCC	2 cut(s)	102, 107
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	124
BspTI	CTTAAG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	117, 185
BstAFI	CTTAAG	1 cut(s)	257
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	90, 262
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	9, 76
BstV2I	GAAGAC	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	102, 107
BtsCI	GGATG	2 cut(s)	90, 262
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	118
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	2 cut(s)	139, 346
CviJI	RGCY	8 cut(s)	39, 89, 102, 107, 288, 327, 383, 394
CviKI_1	RGCY	8 cut(s)	39, 89, 102, 107, 288, 327, 383, 394
CviQI	GTAC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	142, 349
FaiI	YATR	8 cut(s)	42, 130, 140, 144, 227, 347, 386, 398
FatI	CATG	2 cut(s)	138, 345
Fnu4HI	GCNGC	3 cut(s)	23, 90, 279
FokI	GGATG	2 cut(s)	97, 249
Fsp4HI	GCNGC	3 cut(s)	23, 90, 279
GluI	GCNGC	3 cut(s)	23, 90, 279
HaeIII	GGCC	2 cut(s)	102, 107
HapII	CCGG	2 cut(s)	103, 336
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	142, 349
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	2 cut(s)	103, 336
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	5 cut(s)	135, 151, 157, 192, 204
Hpy188III	TCNNGA	3 cut(s)	82, 212, 364
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	2 cut(s)	59, 151
HpyCH4III	ACNGT	2 cut(s)	117, 185
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	11, 270, 405
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	142, 349
LpnPI	CCDG	5 cut(s)	67, 116, 121, 227, 349
Lsp1109I	GCAGC	2 cut(s)	9, 76
LweI	GCATC	5 cut(s)	157, 208, 210, 271, 279
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	338
MboII	GAAGA	4 cut(s)	283, 419, 422, 425
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	2 cut(s)	17, 76
MmeI	TCCRAC	2 cut(s)	129, 158
MnlI	CCTC	4 cut(s)	188, 245, 365, 431
MseI	TTAA	2 cut(s)	180, 258
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	2 cut(s)	103, 336
MspR9I	CCNGG	1 cut(s)	104
NciI	CCSGG	1 cut(s)	104
NlaIII	CATG	2 cut(s)	142, 349
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	24, 91, 280
PspEI	GGTNACC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	180, 258
SatI	GCNGC	3 cut(s)	23, 90, 279
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	4 cut(s)	71, 126, 177, 256
SfaNI	GCATC	5 cut(s)	157, 208, 210, 271, 279
SfcI	CTRYAG	1 cut(s)	9
SgrAI	CRCCGGYG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	17, 76
SsiI	CCGC	3 cut(s)	276, 279, 352
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	117, 185
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	213, 436
TasI	AATT	2 cut(s)	17, 76
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	180, 258
Tru9I	TTAA	2 cut(s)	180, 258
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	22, 89
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	362
Vha464I	CTTAAG	1 cut(s)	257
VneI	GTGCAC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.