Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001058.1

Orthogroup ID

OG0004632

Physical Location & Seq

Genomic Coordinates Reverse (-)

37946 .. 38607

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001058.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgggttcttcttcagttgtggaattgcttcccaaagattacgggtatgtggttctggcggctgtcctctacagctttctgaatttcttcatggcggcccaagtgggcaaggccaggaagaagtacaaggtgttttacccgaccatgtatgcatcggagtccgacaacaaagacgccaaggtgttcaactgtgttcagagaggtcaccagaactcccttgaaatgatgcctttgttctttgtcttcctccttttgggtggtctcaggcatccttgcatttctgccggcctcggattgctctacaccgtttctcgttatttctatttcaaaggatactccaccggcgacccccaaaagcgtctccctatcggggggttcgggttcttggctttgatggggcttatagtgtgcacaatatccttcggggtcactcttcttctgcgagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

MAPEG

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

9.52

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65820 AT1G65820 AT1G65820
fragaria_vesca	FvH4_1g30090
malus_domestica	MD09G1269000.v1.1 MD17G1267400.v1.1 MD17G1267600.v1.1
prunus_persica	Prupe.3G165500_v2.0.a1
pyrus_communis	pycom09g18090 pycom17g26650
rosa_chinensis	RchiOBHm_Chr3g0491671 RchiOBHm_Chr3g0491701 RchiOBHm_Chr3g0491741
rosa_laevigata	RLG00000022803 RLG00000022813 RLG00000022816 RLG00000022829
rosa_multiflora	Rmu_sc0001058.1_g000005 Rmu_sc0009763.1_g000005
rosa_roxburghii	Rroxscaffold_6G00392690 Rroxscaffold_6G00392710
rosa_rugosa	Rorug03G0250900
rosa_samantha	Rh3AG299700 Rh3AG299800 Rh3BG336500 Rh3CG332700 Rh3CG333700 Rh3DG334300 Rh3DG335700
rosa_wichuraiana	Rw3G026490 Rw3G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 95
AcsI	RAATTY	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	253, 370, 371
AgsI	TTSAA	3 cut(s)	187, 221, 328
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	266, 365
Alw44I	GTGCAC	1 cut(s)	409
AoxI	GGCC	3 cut(s)	96, 111, 286
ApaLI	GTGCAC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	2 cut(s)	27, 86
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	413
BccI	CCATC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	266, 365
BfmI	CTRYAG	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	2 cut(s)	60, 96
BlsI	GCNGC	2 cut(s)	61, 97
Bme1390I	CCNGG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	3 cut(s)	161, 216, 277
BpiI	GAAGAC	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	177, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 370, 371
Bse118I	RCCGGY	2 cut(s)	284, 341
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	177, 289
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	253, 370, 371
BseMII	CTCAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	413
BshFI	GGCC	3 cut(s)	98, 113, 288
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	285, 342
BslI	CCNNNNNNNGG	3 cut(s)	253, 370, 371
BsmAI	GTCTC	2 cut(s)	266, 365
BsmBI	CGTCTC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	98, 113, 288
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	413
BspACI	CCGC	2 cut(s)	59, 95
BspANI	GGCC	3 cut(s)	98, 113, 288
BspCNI	CTCAG	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	2 cut(s)	284, 341
BssAI	RCCGGY	2 cut(s)	284, 341
BssECI	CCNNGG	2 cut(s)	177, 289
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	191, 307
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	286, 444
BstDEI	CTNAG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	266, 365
BstNI	CCWGG	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	98, 113, 288
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	286, 444
Cfr10I	RCCGGY	2 cut(s)	284, 341
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	2 cut(s)	182, 347
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	91, 145
CviJI	RGCY	7 cut(s)	62, 75, 98, 113, 288, 389, 400
CviKI_1	RGCY	7 cut(s)	62, 75, 98, 113, 288, 389, 400
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	2 cut(s)	94, 148
FaiI	YATR	6 cut(s)	48, 92, 146, 150, 404, 448
FatI	CATG	2 cut(s)	90, 144
Fnu4HI	GCNGC	2 cut(s)	60, 96
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	60, 96
GluI	GCNGC	2 cut(s)	60, 96
HaeIII	GGCC	3 cut(s)	98, 113, 288
HapII	CCGG	2 cut(s)	285, 342
HgaI	GACGC	2 cut(s)	182, 347
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	94, 148
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	285, 342
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	5 cut(s)	81, 157, 163, 198, 293
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	191, 307
HpyCH4V	TGCA	3 cut(s)	152, 276, 411
HpyF3I	CTNAG	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	94, 148
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	41, 100, 127, 221, 250, 298, 355
LweI	GCATC	3 cut(s)	161, 216, 277
MaeIII	GTNAC	2 cut(s)	203, 427
MboII	GAAGA	6 cut(s)	3, 79, 130, 235, 425, 428
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	2 cut(s)	23, 82
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	77, 194, 257, 299
Mph1103I	ATGCAT	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	284
MroXI	GAANNNNTTC	2 cut(s)	27, 86
MspI	CCGG	2 cut(s)	285, 342
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
NaeI	GCCGGC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	94, 148
NmuCI	GTSAC	2 cut(s)	203, 427
NsiI	ATGCAT	1 cut(s)	154
PdiI	GCCGGC	1 cut(s)	286
PdmI	GAANNNNTTC	2 cut(s)	27, 86
PkrI	GCNGC	2 cut(s)	61, 97
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	2 cut(s)	60, 96
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	4 cut(s)	77, 132, 183, 205
SfaNI	GCATC	3 cut(s)	161, 216, 277
SfcI	CTRYAG	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	23, 82
SsiI	CCGC	2 cut(s)	59, 95
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	191, 307
TasI	AATT	2 cut(s)	23, 82
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	2 cut(s)	62, 98
TseFI	GTSAC	2 cut(s)	203, 427
Tsp45I	GTSAC	2 cut(s)	203, 427
TspDTI	ATGAA	1 cut(s)	79
VneI	GTGCAC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	27, 86
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.