Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004632

Physical Location & Seq

Genomic Coordinates Reverse (-)

12462405 .. 12464270

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGTCTGAGATGACAGTACATGATGGTGGGTGCCACTGCAAGAATGTAAGATGGCGAGTGCAAGCGCCTACTAAGGTTGTGGCTTGGAGTTGCAACTGTTCGATTTGCTCTATGAGGGGTAACACGAATTTCATTGTCCCTTCTGAAAGATTTGAACTCTTGGGTAATTCTGAACAGTTTCTCACAACTTATAGCTTTGGTACTCACACGGCAAAGCATACTTTCTGTAAGGTCTGTGGGATAACTTCGTTTTATTATCCACGCTCAAACCCTGATGGGGTTGCCATCATATATAGGTGTGTTGATCCTGGAACACTAACCTATGATGAGGTCAAGTATTTTGATGGCCAAAATTGGGAAAACTCCTACAACCAGTCGAACATTGCTTCGCAGTCAAAGAAAAAGTCGGAAACTTGGTATAAAGACCAGAAGCACGTAAAGAGGTCCATCCATATCTTCACCCACTTGTTCAACTCTCATCTCAATTCAAAGCTTTTACAGAGATCTTCAATGGGTTCTTCTTCAGTTGTGGAATTGCTTCCTAAAGATTACGGGTATGTGGTTCTGGTGGGTGTCCTCTACAGCTTTCTGAATTCCTTCATGGCGTTCCAAGTGGGTAAGGCCAGGAAGAAGTACAAGGTGTTTTACCCGACCATGTACGCATCGGAGTCCGACAACAAAGAAGCCAAGGTGTTCAACTGTGTTCAGAGAGGTCACCAGAACTCCCTTGAAATGATGCCTTTGTTCTTTGTCTTCCTCCTTTTGGGTGGTCTCAGGCATCCTTGCATCTCCGCCGCCCTCGGATTGCTCTACACCGTTTCTCGCTATTTCTATTTCAAGGGCTACTCCACCGGCGACCCCCAAAAGCGTCTCCCTATCGGGGGGTACGGGTTCTTGGCTTTGATGGGGCTTATAGTATGCACAATTTCCTTCGGGGTCACTCTTCTTCTGCGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0001667 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005819 GO:0005856 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006928 GO:0006996 GO:0008150 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016477 GO:0022607 GO:0031055 GO:0031497 GO:0031507 GO:0031508 GO:0032465 GO:0032467 GO:0032991 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0040011 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0045787 GO:0048518 GO:0048522 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051233 GO:0051276 GO:0051302 GO:0051674 GO:0051726 GO:0051781 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071824 GO:0071840 GO:0090068 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFA

Protein Analysis

321

Amino Acids

36.34

Weight (kDa)

9.24

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFA	PF04828	8 - 104	8.3e-11	Glutathione-dependent formaldehyde-activating enzyme
MAPEG	PF01124	189 - 310	7.2e-29	MAPEG family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65820 AT1G65820 AT1G65820
fragaria_vesca	FvH4_1g30090
malus_domestica	MD09G1269000.v1.1 MD17G1267400.v1.1 MD17G1267600.v1.1
prunus_persica	Prupe.3G165500_v2.0.a1
pyrus_communis	pycom09g18090 pycom17g26650
rosa_chinensis	RchiOBHm_Chr3g0491671 RchiOBHm_Chr3g0491701 RchiOBHm_Chr3g0491741
rosa_laevigata	RLG00000022803 RLG00000022813 RLG00000022816 RLG00000022829
rosa_multiflora	Rmu_sc0001058.1_g000005 Rmu_sc0009763.1_g000005
rosa_roxburghii	Rroxscaffold_6G00392690 Rroxscaffold_6G00392710
rosa_rugosa	Rorug03G0250900
rosa_samantha	Rh3AG299700 Rh3AG299800 Rh3BG336500 Rh3CG332700 Rh3CG333700 Rh3DG334300 Rh3DG335700
rosa_wichuraiana	Rw3G026490 Rw3G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	2 cut(s)	795, 798
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	130, 595
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	5 cut(s)	21, 205, 638, 662, 890
AfiI	CCNNNNNNNGG	5 cut(s)	280, 358, 766, 883, 884
AgsI	TTSAA	7 cut(s)	158, 475, 492, 513, 700, 734, 841
AjnI	CCWGG	2 cut(s)	310, 626
AluBI	AGCT	3 cut(s)	198, 496, 588
AluI	AGCT	3 cut(s)	198, 496, 588
Alw26I	GTCTC	2 cut(s)	779, 878
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	349, 624
ApoI	RAATTY	2 cut(s)	130, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	3 cut(s)	180, 540, 599
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	454, 710
AvaII	GGWCC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	748
BccI	CCATC	7 cut(s)	20, 48, 272, 296, 341, 458, 901
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	312, 628
BcoDI	GTCTC	2 cut(s)	779, 878
BfmI	CTRYAG	1 cut(s)	583
BfoI	RGCGCY	1 cut(s)	71
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	1 cut(s)	798
BlsI	GCNGC	1 cut(s)	799
Bme1390I	CCNGG	2 cut(s)	312, 628
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	312, 628
BmsI	GCATC	4 cut(s)	674, 729, 790, 798
BpiI	GAAGAC	1 cut(s)	748
BsaAI	YACGTR	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	690, 802
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	5 cut(s)	280, 358, 766, 883, 884
Bse118I	RCCGGY	1 cut(s)	854
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	312, 628
BseDI	CCNNGG	2 cut(s)	690, 802
BseGI	GGATG	2 cut(s)	450, 781
BseLI	CCNNNNNNNGG	5 cut(s)	280, 358, 766, 883, 884
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	790
BseNI	ACTGG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	351, 626
BshNI	GGYRCC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	855
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	5 cut(s)	280, 358, 766, 883, 884
BsmAI	GTCTC	2 cut(s)	779, 878
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	351, 626
Bso31I	GGTCTC	1 cut(s)	779
Bsp143I	GATC	2 cut(s)	307, 506
BspACI	CCGC	2 cut(s)	795, 798
BspANI	GGCC	2 cut(s)	351, 626
BspCNI	CTCAG	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	854
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	854
BssECI	CCNNGG	2 cut(s)	690, 802
BssMI	GATC	2 cut(s)	307, 506
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	312, 628
Bst4CI	ACNGT	5 cut(s)	19, 101, 180, 704, 820
Bst6I	CTCTTC	1 cut(s)	951
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	66, 957
BstDEI	CTNAG	3 cut(s)	9, 75, 776
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	2 cut(s)	450, 781
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	310, 509
BstMAI	GTCTC	2 cut(s)	779, 878
BstMBI	GATC	2 cut(s)	307, 506
BstNI	CCWGG	2 cut(s)	312, 628
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	310, 626
BstSFI	CTRYAG	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	351, 626
BtsCI	GGATG	2 cut(s)	450, 781
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	66, 957
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	854
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	5 cut(s)	20, 204, 637, 661, 889
CviAII	CATG	3 cut(s)	23, 604, 658
CviQI	GTAC	5 cut(s)	20, 204, 637, 661, 889
DdeI	CTNAG	3 cut(s)	9, 75, 776
DpnI	GATC	2 cut(s)	309, 508
DpnII	GATC	2 cut(s)	307, 506
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
EciI	GGCGGA	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	779
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	310, 626
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	3 cut(s)	26, 607, 661
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	22, 603, 657
Fnu4HI	GCNGC	1 cut(s)	798
FokI	GGATG	2 cut(s)	437, 768
Fsp4HI	GCNGC	1 cut(s)	798
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	798
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	351, 626
HapII	CCGG	1 cut(s)	855
HgaI	GACGC	1 cut(s)	860
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	26, 607, 661
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	5, 671
HpaII	CCGG	1 cut(s)	855
HphI	GGTGA	2 cut(s)	454, 710
Hpy188I	TCNGA	9 cut(s)	10, 148, 175, 412, 594, 670, 676, 711, 806
HpyAV	CCTTC	3 cut(s)	153, 610, 943
HpyCH4III	ACNGT	5 cut(s)	19, 101, 180, 704, 820
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	5 cut(s)	42, 64, 96, 789, 924
HpyF3I	CTNAG	3 cut(s)	9, 75, 776
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	26, 607, 661
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	307, 506
LweI	GCATC	4 cut(s)	674, 729, 790, 798
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	3 cut(s)	122, 716, 940
MalI	GATC	2 cut(s)	309, 508
MboI	GATC	2 cut(s)	307, 506
MboII	GAAGA	8 cut(s)	451, 501, 513, 516, 643, 748, 938, 941
MflI	RGATCY	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	7 cut(s)	130, 169, 355, 487, 536, 595, 927
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	14, 680
MmeI	TCCRAC	2 cut(s)	390, 699
MnlI	CCTC	7 cut(s)	111, 325, 438, 590, 707, 770, 812
Mox20I	TGGCCA	1 cut(s)	351
MroXI	GAANNNNTTC	3 cut(s)	180, 540, 599
MscI	TGGCCA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	855
MspR9I	CCNGG	2 cut(s)	312, 628
MvaI	CCWGG	2 cut(s)	312, 628
NdeII	GATC	2 cut(s)	307, 506
NlaIII	CATG	3 cut(s)	26, 607, 661
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	716, 940
PdmI	GAANNNNTTC	3 cut(s)	180, 540, 599
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	799
PleI	GAGTC	2 cut(s)	13, 679
PpsI	GAGTC	2 cut(s)	13, 679
Ppu21I	YACGTR	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	310, 626
PspEI	GGTNACC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	310, 626
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	5 cut(s)	21, 205, 638, 662, 890
RsaNI	GTAC	5 cut(s)	20, 204, 637, 661, 889
RseI	CAYNNNNRTG	1 cut(s)	27
SatI	GCNGC	1 cut(s)	798
Sau3AI	GATC	2 cut(s)	307, 506
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	14, 680
ScrFI	CCNGG	2 cut(s)	312, 628
SfaNI	GCATC	4 cut(s)	674, 729, 790, 798
SfcI	CTRYAG	1 cut(s)	583
SgrAI	CRCCGGYG	1 cut(s)	854
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	7 cut(s)	130, 169, 355, 487, 536, 595, 927
SsiI	CCGC	2 cut(s)	795, 798
StyD4I	CCNGG	2 cut(s)	310, 626
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	5 cut(s)	19, 101, 180, 704, 820
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	104, 380
TasI	AATT	7 cut(s)	130, 169, 355, 487, 536, 595, 927
TatI	WGTACW	2 cut(s)	19, 636
TauI	GCSGC	1 cut(s)	800
TscAI	CASTG	1 cut(s)	44
TseFI	GTSAC	2 cut(s)	716, 940
Tsp45I	GTSAC	2 cut(s)	716, 940
TspDTI	ATGAA	2 cut(s)	124, 592
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	2 cut(s)	130, 595
XmnI	GAANNNNTTC	3 cut(s)	180, 540, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.