Rroxscaffold_6G00392690

Microsomal glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004632
Physical Location & Seq
Reverse (-)
12387384 .. 12391944
4561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392690.1

Sequence Viewer

Length: 450 bp
ATGGGTTCTTCTTCAGTTGTGGAATTGCTTCCTAAAGATTACGGGTATGTGGTTCTGGTGGTTGTCCTCTACAGCTTTCTGAATTTCTTCATGGCGTTCCAAGTGGGTAAGGCCAGGAAGAAGTACAAGGTGTTTTACCCGACCATGTATGCATCGGAGTCCGACAACAAAGACGCCAAGGTGTTCAACTGTGTTCAGAGAGGTCACCAGAACTCCCTTGAAATGATGCCTTTGTTCTTTGTCTTCCTCCTTTTGGGTGGTCTCAGGCATCCTTGCATCTCCGCCGCCCTCGGATTGCTCTACACCGTTTCTCGCTATTTCTATTTCAAAGGCTACTCCACCGGCGACCCCCAGAAGCGTCTCCCTATCGGGGGGTACGGGTTCTTGGCTTTGATGGGGCTTATAGTGTGCACAATTTCCTTCGGGGTCACTCTTCTTCTGCGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
MAPEG

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

9.49

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAPEG PF01124 17 - 139 8.1e-31 MAPEG family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 282, 285
AcsI RAATTY 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 125, 377
AfiI CCNNNNNNNGG 3 cut(s) 253, 370, 371
AgsI TTSAA 3 cut(s) 187, 221, 328
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 266, 365
Alw44I GTGCAC 1 cut(s) 409
AoxI GGCC 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 409
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 2 cut(s) 27, 86
AsuHPI GGTGA 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 413
BccI CCATC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 266, 365
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 4 cut(s) 161, 216, 277, 285
BpiI GAAGAC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 177, 289
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 370, 371
Bse118I RCCGGY 1 cut(s) 341
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 177, 289
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 3 cut(s) 253, 370, 371
BseMII CTCAG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 413
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 3 cut(s) 253, 370, 371
BsmAI GTCTC 2 cut(s) 266, 365
BsmBI CGTCTC 1 cut(s) 365
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 413
BspACI CCGC 2 cut(s) 282, 285
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 177, 289
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 191, 307
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 263
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 266, 365
BstNI CCWGG 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 341
CseI GACGC 2 cut(s) 182, 347
Csp6I GTAC 2 cut(s) 124, 376
CviAII CATG 2 cut(s) 91, 145
CviJI RGCY 5 cut(s) 75, 113, 333, 389, 400
CviKI_1 RGCY 5 cut(s) 75, 113, 333, 389, 400
CviQI GTAC 2 cut(s) 124, 376
DdeI CTNAG 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 2 cut(s) 94, 148
FaiI YATR 6 cut(s) 48, 92, 146, 150, 404, 448
FatI CATG 2 cut(s) 90, 144
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 342
HgaI GACGC 2 cut(s) 182, 347
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 94, 148
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 342
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 5 cut(s) 81, 157, 163, 198, 293
Hpy8I GTNNAC 1 cut(s) 411
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 191, 307
HpyCH4V TGCA 3 cut(s) 152, 276, 411
HpyF3I CTNAG 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 94, 148
LpnPI CCDG 7 cut(s) 41, 100, 127, 221, 250, 355, 365
LweI GCATC 4 cut(s) 161, 216, 277, 285
MaeIII GTNAC 2 cut(s) 203, 427
MboII GAAGA 6 cut(s) 3, 79, 130, 235, 425, 428
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 3 cut(s) 23, 82, 414
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 77, 194, 257, 299
Mph1103I ATGCAT 1 cut(s) 154
MroXI GAANNNNTTC 2 cut(s) 27, 86
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
NlaIII CATG 2 cut(s) 94, 148
NmuCI GTSAC 2 cut(s) 203, 427
NsiI ATGCAT 1 cut(s) 154
PdmI GAANNNNTTC 2 cut(s) 27, 86
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 113
RsaI GTAC 2 cut(s) 125, 377
RsaNI GTAC 2 cut(s) 124, 376
SatI GCNGC 1 cut(s) 285
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 413
SetI ASST 4 cut(s) 77, 132, 183, 205
SfaNI GCATC 4 cut(s) 161, 216, 277, 285
SfcI CTRYAG 1 cut(s) 70
SgrAI CRCCGGYG 1 cut(s) 341
Sse9I AATT 3 cut(s) 23, 82, 414
SsiI CCGC 2 cut(s) 282, 285
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 191, 307
TasI AATT 3 cut(s) 23, 82, 414
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 287
TseFI GTSAC 2 cut(s) 203, 427
Tsp45I GTSAC 2 cut(s) 203, 427
TspDTI ATGAA 1 cut(s) 79
VneI GTGCAC 1 cut(s) 409
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 2 cut(s) 27, 86
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.