Rw3G026560

Microsomal glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004632
Physical Location & Seq
Forward (+)
36501204 .. 36501865
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026560.1

Sequence Viewer

Length: 420 bp
ATGGGTTCTTCTTCAGTTGTGGAATTGCTTCCCAAAGATTACGGGTATGTGGTTCTGGCGGCTGTCCTCTACAGCTTTCTGAATTTCTTCATGGCGGCCCAAGTGGGCAAGGCCAGGAAGAAGTACAAGTCCGACAACAAAGACGCCAAGGTGTTCAACTGTGTTCAGAGAGGTCACCAGAACTCCCTTGAAATGATGCCTTTGTTCTTTGTCTTCCTCCTTTTGGGTGGTCTCAGGCATCCTTGCATTTCTGCCGGCCTCGGATTGCTCTACACCGTTTCTCGTTATTTCTATTTCAAAGGATACTCCACCGGCGACCCCCAAAAGCGTCTCCCTATCGGGGGGTTCGGGTTCTTGGCTTTGATGGGGCTTATAGTGTGCACAATATCCTTCGGGGTCACTCTTCTTCTGCGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
MAPEG

Protein Analysis

139

Amino Acids

15.38

Weight (kDa)

9.68

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAPEG PF01124 17 - 129 2.4e-28 MAPEG family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 95
AcsI RAATTY 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 223, 340, 341
AgsI TTSAA 3 cut(s) 157, 191, 298
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 236, 335
Alw44I GTGCAC 1 cut(s) 379
AoxI GGCC 3 cut(s) 96, 111, 256
ApaLI GTGCAC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 2 cut(s) 27, 86
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 383
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 115
BciVI GTATCC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 236, 335
BfmI CTRYAG 1 cut(s) 70
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 2 cut(s) 60, 96
BlsI GCNGC 2 cut(s) 61, 97
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 186, 247
BpiI GAAGAC 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 147, 259
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 340, 341
Bse118I RCCGGY 2 cut(s) 254, 311
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 147, 259
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 3 cut(s) 223, 340, 341
BseMII CTCAG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 383
BshFI GGCC 3 cut(s) 98, 113, 258
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 2 cut(s) 255, 312
BslI CCNNNNNNNGG 3 cut(s) 223, 340, 341
BsmAI GTCTC 2 cut(s) 236, 335
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 3 cut(s) 98, 113, 258
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 383
BspACI CCGC 2 cut(s) 59, 95
BspANI GGCC 3 cut(s) 98, 113, 258
BspCNI CTCAG 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 254, 311
BssAI RCCGGY 2 cut(s) 254, 311
BssECI CCNNGG 2 cut(s) 147, 259
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 161, 277
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 256, 414
BstDEI CTNAG 1 cut(s) 233
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 238
BstMAI GTCTC 2 cut(s) 236, 335
BstNI CCWGG 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 205
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 3 cut(s) 98, 113, 258
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 256, 414
Cfr10I RCCGGY 2 cut(s) 254, 311
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 2 cut(s) 152, 317
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 91
CviJI RGCY 7 cut(s) 62, 75, 98, 113, 258, 359, 370
CviKI_1 RGCY 7 cut(s) 62, 75, 98, 113, 258, 359, 370
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 236
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 48, 92, 374, 418
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 60, 96
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 60, 96
GluI GCNGC 2 cut(s) 60, 96
HaeIII GGCC 3 cut(s) 98, 113, 258
HapII CCGG 2 cut(s) 255, 312
HgaI GACGC 2 cut(s) 152, 317
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 94
HpaII CCGG 2 cut(s) 255, 312
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 81, 133, 168, 263
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 161, 277
HpyCH4V TGCA 2 cut(s) 246, 381
HpyF3I CTNAG 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 94
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 41, 100, 127, 191, 220, 268, 325
LweI GCATC 2 cut(s) 186, 247
MaeIII GTNAC 2 cut(s) 173, 397
MboII GAAGA 6 cut(s) 3, 79, 130, 205, 395, 398
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 2 cut(s) 23, 82
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 77, 164, 227, 269
MroNI GCCGGC 1 cut(s) 254
MroXI GAANNNNTTC 2 cut(s) 27, 86
MspI CCGG 2 cut(s) 255, 312
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
NaeI GCCGGC 1 cut(s) 256
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 173, 397
PdiI GCCGGC 1 cut(s) 256
PdmI GAANNNNTTC 2 cut(s) 27, 86
PkrI GCNGC 2 cut(s) 61, 97
Psp6I CCWGG 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 113
PspPI GGNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 2 cut(s) 60, 96
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 383
SetI ASST 3 cut(s) 77, 153, 175
SfaNI GCATC 2 cut(s) 186, 247
SfcI CTRYAG 1 cut(s) 70
SgrAI CRCCGGYG 1 cut(s) 311
Sse9I AATT 2 cut(s) 23, 82
SsiI CCGC 2 cut(s) 59, 95
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 161, 277
TasI AATT 2 cut(s) 23, 82
TatI WGTACW 1 cut(s) 123
TauI GCSGC 2 cut(s) 62, 98
TseFI GTSAC 2 cut(s) 173, 397
Tsp45I GTSAC 2 cut(s) 173, 397
TspDTI ATGAA 1 cut(s) 79
VneI GTGCAC 1 cut(s) 379
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 2 cut(s) 27, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.