pycom10g01550

Histidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012320
Physical Location & Seq
Forward (+)
1634308 .. 1636108
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 996 bp
ATGGATCATGAGAACGGAGCTGTGGCGGTGGAGATGCTATCCGATGATTTCGATCCCACGGCTGTGGTTGCGGAGCCTTTGCCTCCGGTTGTAACCAGCACCGACGACTGCGATCTCCTCGGAAAATTGGCCGAAGACCACAAAGGTAGTCGGGAGAAACAGATGGTTCTCGGCCGGAACGTGCACACCACGTGCCTCGCCGTGACGGAGCCCGAATCCAACGACGATTTCACTGGCGATAAGGAGGCGTACATGGCCAGTGTCCTCGCGCGCTACCGCAAAACCCTTATCGAGAGGACCAAGCACCATCTGGGTTATCCGTACAATTTGGACTTCGACTATGGTGCTCTGACGCAGCTTCAGCATTTCTCCATCAACAATTTGGGCGATCCGTTTATCGAGAGCAACTACGGTGTCCATTCAAGGCAGTTCGAGGTCGGTGTTCTCGATTGGTTTGCTCGGTTGTGGGAGATTGAGAAGAATGAGTATTGGGGATACATCACCAATTGCGGCACGGAAGGCAATCTTCACGGAGTCTTAGTTGGGAGAGAAGTATTTCCAGATGGGATTCTGTATGCTTCTCGAGAATCGCATTATTCGATATTTAAAGCTGCCAGAATGTATAGAATGGAATGCGAAAAGATTGATTGTCTGATCTCTCGTGAGATTGATTGTGCGGATTTTAAAACTAAACTTCTTGCTCACCAGGATAAACCCGCCATCATCAACGTTAATATTGTGCAGGAACAACTGTCAAAGGAGCTGTTGACGACCTGGATCTCGTCATACAGACCCTTGAAGAATGTGGATACAAGATATCGATCGTTTCTACATTCACTGCGACGGAGCATTATTTGGACTTATGATGCCTTTTGTCAAACGTGCACCAAAAGTTTCGTTCAAGAAGCCCATTGGGAGTGTCAGCGTTTCTGGTCACAAGTTTGTTGGATGTCCAATGCCTTGTGGTGTTCAGATAACAAGGCTGGAGCACATTAA

Protein Analysis

332

Amino Acids

38.12

Weight (kDa)

5.46

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43710
fragaria_vesca FvH4_2g14160
malus_domestica MD05G1021600.v1.1 MD10G1023600.v1.1
prunus_persica Prupe.1G560500_v2.0.a1 Prupe.8G026000_v2.0.a1
pyrus_communis pycom05g01270 pycom10g01550 pycom10g01560
rosa_chinensis RchiOBHm_Chr6g0276311
rosa_laevigata RLG00000013405
rosa_multiflora Rmu_sc0003665.1_g000004
rosa_roxburghii Rroxscaffold_7G00192400
rosa_rugosa Rorug06G0099800
rosa_samantha Rh6AG211100 Rh6BG215400 Rh6CG217800 Rh6DG207800
rosa_wichuraiana Rw6G018420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 269, 271
AciI CCGC 6 cut(s) 26, 71, 277, 510, 677, 717
AclI AACGTT 1 cut(s) 729
AclWI GGATC 4 cut(s) 12, 47, 383, 785
AcoI YGGCCR 3 cut(s) 129, 172, 255
AcuI CTGAAG 1 cut(s) 344
AcvI CACGTG 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 192
AfaI GTAC 2 cut(s) 251, 323
AgsI TTSAA 3 cut(s) 423, 799, 902
AjnI CCWGG 2 cut(s) 705, 773
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 4 cut(s) 20, 358, 611, 763
AluI AGCT 4 cut(s) 20, 358, 611, 763
Alw21I GWGCWC 4 cut(s) 186, 349, 887, 991
Alw44I GTGCAC 2 cut(s) 182, 883
AlwI GGATC 4 cut(s) 12, 47, 383, 785
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 3 cut(s) 129, 172, 255
ApaLI GTGCAC 2 cut(s) 182, 883
ApeKI GCWGC 2 cut(s) 355, 611
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 2 cut(s) 271, 273
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 493, 695
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 1 cut(s) 297
BaeGI GKGCMC 2 cut(s) 186, 887
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 213
BauI CACGAG 1 cut(s) 660
BbrPI CACGTG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 4 cut(s) 186, 349, 887, 991
BbvI GCAGC 2 cut(s) 367, 598
BccI CCATC 5 cut(s) 157, 315, 380, 557, 728
BceAI ACGGC 2 cut(s) 75, 185
BcgI CGANNNNNNTGC 4 cut(s) 326, 360, 437, 471
BciT130I CCWGG 2 cut(s) 707, 775
BciVI GTATCC 2 cut(s) 488, 802
BfuI GTATCC 2 cut(s) 488, 802
BisI GCNGC 3 cut(s) 356, 511, 612
BlsI GCNGC 3 cut(s) 357, 512, 613
Bme1390I CCNGG 2 cut(s) 707, 775
Bme18I GGWCC 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 75, 210
BmrFI CCNGG 2 cut(s) 707, 775
BmsI GCATC 2 cut(s) 24, 856
BpiI GAAGAC 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 820
BsaAI YACGTR 1 cut(s) 192
BsaBI GATNNNNATC 2 cut(s) 51, 820
BsaJI CCNNGG 2 cut(s) 57, 118
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bse1I ACTGG 2 cut(s) 238, 258
Bse8I GATNNNNATC 2 cut(s) 51, 820
BseBI CCWGG 2 cut(s) 707, 775
BseCI ATCGAT 1 cut(s) 820
BseDI CCNNGG 2 cut(s) 57, 118
BseGI GGATG 1 cut(s) 954
BseJI GATNNNNATC 2 cut(s) 51, 820
BseNI ACTGG 2 cut(s) 238, 258
BsePI GCGCGC 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 2 cut(s) 186, 887
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 367, 598
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 2 cut(s) 269, 271
Bsh1285I CGRYCG 2 cut(s) 175, 824
BshFI GGCC 3 cut(s) 131, 174, 257
BshVI ATCGAT 1 cut(s) 820
BsiEI CGRYCG 2 cut(s) 175, 824
BsiHKAI GWGCWC 4 cut(s) 186, 349, 887, 991
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 2 cut(s) 86, 175
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 3 cut(s) 131, 174, 257
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 5 cut(s) 186, 213, 349, 887, 991
Bsp143I GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
BspACI CCGC 6 cut(s) 26, 71, 277, 510, 677, 717
BspANI GGCC 3 cut(s) 131, 174, 257
BspDI ATCGAT 1 cut(s) 820
BspFNI CGCG 2 cut(s) 269, 271
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 75, 210
BspPI GGATC 4 cut(s) 12, 47, 383, 785
BsrI ACTGG 2 cut(s) 238, 258
BssECI CCNNGG 2 cut(s) 57, 118
BssHII GCGCGC 1 cut(s) 269
BssMI GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
BssSI CACGAG 1 cut(s) 660
Bst2BI CACGAG 1 cut(s) 660
Bst2UI CCWGG 2 cut(s) 707, 775
Bst4CI ACNGT 2 cut(s) 413, 753
BstBAI YACGTR 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 538
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 954
BstFNI CGCG 2 cut(s) 269, 271
BstHHI GCGC 2 cut(s) 271, 273
BstKTI GATC 7 cut(s) 7, 55, 115, 391, 657, 780, 824
BstMBI GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
BstMCI CGRYCG 2 cut(s) 175, 824
BstMWI GCNNNNNNNGC 4 cut(s) 68, 254, 361, 519
BstNI CCWGG 2 cut(s) 707, 775
BstSCI CCNGG 2 cut(s) 705, 773
BstSLI GKGCMC 2 cut(s) 186, 887
BstUI CGCG 2 cut(s) 269, 271
BstV1I GCAGC 2 cut(s) 367, 598
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 777
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 1 cut(s) 777
BstZI CGGCCG 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 820
BsuI GTATCC 2 cut(s) 488, 802
BsuRI GGCC 3 cut(s) 131, 174, 257
BsuTUI ATCGAT 1 cut(s) 820
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 954
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 3 cut(s) 231, 265, 836
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 1 cut(s) 7
CfoI GCGC 2 cut(s) 271, 273
Cfr13I GGNCC 1 cut(s) 297
ClaI ATCGAT 1 cut(s) 820
CseI GACGC 1 cut(s) 361
Csp6I GTAC 2 cut(s) 250, 322
CviAII CATG 2 cut(s) 8, 253
CviQI GTAC 2 cut(s) 250, 322
DdeI CTNAG 1 cut(s) 538
DpnI GATC 7 cut(s) 6, 54, 114, 390, 656, 779, 823
DpnII GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
DraI TTTAAA 2 cut(s) 607, 685
DraIII CACNNNGTG 1 cut(s) 192
EaeI YGGCCR 3 cut(s) 129, 172, 255
EagI CGGCCG 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 297
Eco52I CGGCCG 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 344
Eco72I CACGTG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 705, 773
EcoRV GATATC 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 2 cut(s) 11, 256
FaiI YATR 7 cut(s) 9, 254, 342, 576, 624, 787, 864
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 2 cut(s) 7, 252
FauI CCCGC 1 cut(s) 724
Fnu4HI GCNGC 3 cut(s) 356, 511, 612
FokI GGATG 1 cut(s) 961
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 356, 511, 612
GlaI GCGC 2 cut(s) 270, 272
GluI GCNGC 3 cut(s) 356, 511, 612
HaeIII GGCC 3 cut(s) 131, 174, 257
HapII CCGG 2 cut(s) 86, 175
HgaI GACGC 1 cut(s) 361
HhaI GCGC 2 cut(s) 271, 273
Hin1II CATG 2 cut(s) 11, 256
Hin6I GCGC 2 cut(s) 269, 271
HinP1I GCGC 2 cut(s) 269, 271
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 4 cut(s) 215, 534, 568, 587
HpaII CCGG 2 cut(s) 86, 175
HphI GGTGA 2 cut(s) 493, 695
Hpy166II GTNNAC 3 cut(s) 184, 768, 885
Hpy188I TCNGA 5 cut(s) 43, 122, 351, 654, 973
Hpy8I GTNNAC 3 cut(s) 184, 768, 885
Hpy99I CGWCG 3 cut(s) 107, 227, 846
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 2 cut(s) 413, 753
HpyCH4IV ACGT 4 cut(s) 180, 191, 729, 881
HpyCH4V TGCA 3 cut(s) 184, 742, 885
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 254, 361, 519
HpyF3I CTNAG 1 cut(s) 538
HpySE526I ACGT 4 cut(s) 180, 191, 729, 881
Hsp92II CATG 2 cut(s) 11, 256
HspAI GCGC 2 cut(s) 269, 271
Kzo9I GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
LmnI GCTCC 6 cut(s) 17, 73, 208, 760, 846, 986
Lsp1109I GCAGC 2 cut(s) 367, 598
LweI GCATC 2 cut(s) 24, 856
MaeII ACGT 4 cut(s) 180, 191, 729, 881
MaeIII GTNAC 3 cut(s) 91, 202, 933
MalI GATC 7 cut(s) 6, 54, 114, 390, 656, 779, 823
MboI GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
MboII GAAGA 4 cut(s) 146, 490, 518, 811
MfeI CAATTG 1 cut(s) 505
MflI RGATCY 1 cut(s) 777
MhlI GDGCHC 5 cut(s) 186, 213, 349, 887, 991
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 4 cut(s) 125, 325, 379, 505
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 543
MmeI TCCRAC 2 cut(s) 243, 926
MnlI CCTC 7 cut(s) 93, 128, 206, 238, 275, 288, 427
Mox20I TGGCCA 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 555
MscI TGGCCA 1 cut(s) 257
MseI TTAA 4 cut(s) 606, 684, 732, 994
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 2 cut(s) 86, 175
MspR9I CCNGG 2 cut(s) 707, 775
MunI CAATTG 1 cut(s) 505
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 2 cut(s) 707, 775
MvnI CGCG 2 cut(s) 269, 271
MwoI GCNNNNNNNGC 4 cut(s) 68, 254, 361, 519
NdeII GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
NlaIII CATG 2 cut(s) 11, 256
NlaIV GGNNCC 2 cut(s) 75, 210
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 2 cut(s) 202, 933
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 582
PagI TCATGA 1 cut(s) 7
PauI GCGCGC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 444, 596
PctI GAATGC 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 215, 568, 587
PkrI GCNGC 3 cut(s) 357, 512, 613
Ple19I CGATCG 1 cut(s) 824
PleI GAGTC 1 cut(s) 542
PmaCI CACGTG 1 cut(s) 192
PmlI CACGTG 1 cut(s) 192
PpsI GAGTC 1 cut(s) 542
Ppu21I YACGTR 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 705, 773
PspCI CACGTG 1 cut(s) 192
PspGI CCWGG 2 cut(s) 705, 773
PspN4I GGNNCC 2 cut(s) 75, 210
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 777
PteI GCGCGC 1 cut(s) 269
PvuI CGATCG 1 cut(s) 824
RsaI GTAC 2 cut(s) 251, 323
RsaNI GTAC 2 cut(s) 250, 322
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 4 cut(s) 606, 684, 732, 994
SatI GCNGC 3 cut(s) 356, 511, 612
Sau3AI GATC 7 cut(s) 4, 52, 112, 388, 654, 777, 821
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 2 cut(s) 707, 775
SduI GDGCHC 5 cut(s) 186, 213, 349, 887, 991
SfaNI GCATC 2 cut(s) 24, 856
Sfr274I CTCGAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 297
SlaI CTCGAG 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 4 cut(s) 125, 325, 379, 505
SsiI CCGC 6 cut(s) 26, 71, 277, 510, 677, 717
SspI AATATT 1 cut(s) 736
StyD4I CCNGG 2 cut(s) 705, 773
TaaI ACNGT 2 cut(s) 413, 753
TaiI ACGT 4 cut(s) 183, 194, 732, 884
TaqI TCGA 9 cut(s) 51, 291, 336, 399, 432, 447, 583, 599, 820
TasI AATT 4 cut(s) 125, 325, 379, 505
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 3 cut(s) 215, 568, 587
Tru1I TTAA 4 cut(s) 606, 684, 732, 994
Tru9I TTAA 4 cut(s) 606, 684, 732, 994
TscAI CASTG 3 cut(s) 238, 265, 843
TseFI GTSAC 2 cut(s) 202, 933
TseI GCWGC 2 cut(s) 355, 611
Tsp45I GTSAC 2 cut(s) 202, 933
TspGWI ACGGA 7 cut(s) 30, 221, 309, 381, 530, 546, 859
TspRI CASTG 3 cut(s) 238, 265, 843
VneI GTGCAC 2 cut(s) 182, 883
VpaK11BI GGWCC 1 cut(s) 297
XcmI CCANNNNNNNNNTGG 2 cut(s) 307, 379
XhoI CTCGAG 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.