Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010037

Physical Location & Seq

Genomic Coordinates Forward (+)

3500264 .. 3500746

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTTTGCTAGAGATAGTAAGTGGGAGAAGGAATTTTGAAGTTTCTGAGGAGACAAATAGGAAAAAGTTCTCCTTATGGGCTTTTGAGGAATTTGAGAAGGGTAACATCAAGGGAATTGTCGATAAAAGGTTAGTCGACCAAGATGTTGATATCGATCAAGTGAAGAGAGCGATTCAGGTAACCTTCTGGTGCATACAGGAACAACCATCTCACAGGCCGATGATGGGAAAGGTTTTGCAGATGCTGGAAGGAATTACAGATATTGAAACCCCGCCAGGCCCAAGGGCTGCCATCGAAGGGTCTGCCGGTGGAACCATCATGAATGTGAGCAGTGATATCAGCACTCTATCCGCTACTGCAGCCTCAGCCCCAGCTCCCTCCTCATCTTCATCAGTGCAAGTTTCAGGAGTATCGCCGCTAACATCAGGGAGGAATACGGAGAAGGCAACTGCATCCCTTATACAGTCAGACGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

161

Amino Acids

17.22

Weight (kDa)

5.06

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34300
fragaria_vesca	FvH4_2g12390
malus_domestica	MD05G1039400.v1.1 MD05G1039500.v1.1 MD10G1044900.v1.1
prunus_persica	Prupe.8G051900_v2.0.a1
pyrus_communis	pycom05g03200 pycom05g03220 pycom10g03130 pycom10g03140
rosa_chinensis	RchiOBHm_Chr6g0272421
rosa_laevigata	RLG00000013671
rosa_multiflora	Rmu_co8482727.1_g000001 Rmu_sc0017109.1_g000001 Rmu_ssc0000204.1_g000064
rosa_rugosa	Rorug06G0069700
rosa_samantha	Rh6AG185500 Rh6BG188600 Rh6CG186600 Rh6DG178200
rosa_wichuraiana	Rw6G016020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	3 cut(s)	275, 354, 419
AcsI	RAATTY	2 cut(s)	34, 92
AfiI	CCNNNNNNNGG	2 cut(s)	227, 300
AgsI	TTSAA	2 cut(s)	41, 269
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	2 cut(s)	218, 280
ApeKI	GCWGC	2 cut(s)	290, 362
ApoI	RAATTY	2 cut(s)	34, 92
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	277, 374
BccI	CCATC	4 cut(s)	217, 220, 302, 326
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	3 cut(s)	291, 363, 419
BlsI	GCNGC	3 cut(s)	292, 364, 420
Bme1390I	CCNGG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	234, 464
Bpu10I	CCTNAGC	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 300
Bse118I	RCCGGY	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	455
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	227, 300
BseMII	CTCAG	2 cut(s)	39, 381
BseRI	GAGGAG	2 cut(s)	65, 373
BseXI	GCAGC	2 cut(s)	277, 374
BseYI	CCCAGC	1 cut(s)	373
BshFI	GGCC	2 cut(s)	220, 282
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	227, 300
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	220, 282
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	3 cut(s)	275, 354, 419
BspANI	GGCC	2 cut(s)	220, 282
BspCNI	CTCAG	2 cut(s)	40, 380
BspDI	ATCGAT	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	48, 367
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	455
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 368
BstNI	CCWGG	1 cut(s)	279
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	277, 374
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	220, 282
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	340, 402
CaiI	CAGNNNCTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	156
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	7 cut(s)	83, 220, 282, 290, 365, 371, 377
CviKI_1	RGCY	7 cut(s)	83, 220, 282, 290, 365, 371, 377
DdeI	CTNAG	2 cut(s)	48, 367
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	284
Eco32I	GATATC	2 cut(s)	154, 340
Eco91I	GGTNACC	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	2 cut(s)	154, 340
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	325
FaiI	YATR	4 cut(s)	79, 197, 323, 464
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	1 cut(s)	321
FauI	CCCGC	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	291, 363, 419
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	3 cut(s)	291, 363, 419
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	3 cut(s)	291, 363, 419
GsaI	CCCAGC	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	220, 282
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	49, 472
Hpy188III	TCNNGA	2 cut(s)	322, 408
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	6 cut(s)	24, 94, 196, 245, 293, 439
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4V	TGCA	5 cut(s)	195, 241, 362, 400, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 368
HpyF3I	CTNAG	2 cut(s)	48, 367
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	2 cut(s)	277, 374
LweI	GCATC	2 cut(s)	234, 464
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	104, 181
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	178, 381
MluCI	AATT	5 cut(s)	34, 92, 117, 255, 478
MnlI	CCTC	6 cut(s)	43, 82, 376, 391, 394, 426
MroXI	GAANNNNTTC	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	362, 368
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	292, 364, 420
Psp6I	CCWGG	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	137
SatI	GCNGC	3 cut(s)	291, 363, 419
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	5 cut(s)	134, 183, 188, 237, 379
SfaNI	GCATC	2 cut(s)	234, 464
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	5 cut(s)	34, 92, 117, 255, 478
SsiI	CCGC	3 cut(s)	275, 354, 419
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	468
TaqI	TCGA	4 cut(s)	123, 138, 156, 297
TasI	AATT	5 cut(s)	34, 92, 117, 255, 478
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	2 cut(s)	340, 402
TseI	GCWGC	2 cut(s)	290, 362
TspDTI	ATGAA	2 cut(s)	338, 381
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	340, 402
XapI	RAATTY	2 cut(s)	34, 92
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.