Rorug06G0069700

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010037
Physical Location & Seq
Reverse (-)
9290056 .. 9291745
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0069700.1

Sequence Viewer

Length: 864 bp
ATGGATGGCGAATCGGTTCAGCGGCAACAGAGGGAGTTGGATCGGGTTAAGGGGCCGTGGAGCCCCGAAGAGGACGACTTGCTGAGGAAGCTGGTGCAGCGGCACGGCGCTCGGAACTGGACGCTGATAAGCAAGTCGATTCCCGGCCGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAATCAGCTCTCGCCGGAGGTGGAGCACCGGCCGTTCACGGCGGAGGAGGACGAGATAATCGCGGCGGCGCATTCCAAGTACGGCAACAAGTGGGCCACCATAGCCAGGCTCCTCAACGGCCGTACGGACAATGCGATCAAGAACCACTGGAACTCCACTCTGAAGCGGAAGTACTCGTCCATGGCGGAAGACGGCGTCGTCGTCGGAGGAGGCGTTTCGATCGAGGAGCATCACCACCACCACCTCCGGCCGGAGAAGAAATCGGCGACTGTTTCGGTGTCGGGGCGCGGATACAGTCCGACGAGCCCGTCCGGATCCGACGTCAGCGACTCCGGCGTGGTGGCTGCAGTCTCGTCGGCGCAGGTGTTCAGGCCGGTGGCGAGAGCAGTGTTGAGGACGGAGTCGCCGCCGAGCCAGAACGGCTTCATCCACAATGAACCGGAGCCGTCGACTCTGCTGACTCTGTCGTTACCTGGTGGCTACTCGACCGAGTTGGCGACTCGTGGAGAAGAAAGAACGACGTCGTTGCAGCAGCAGGAGGAGGAGGAGGCTGAGAATGAGAACAGAACGATGTCGTTTGGGCCGGAGTTCATGTCTTTTATGCAGGAGATGATTAGGAAGGAGGTTAGGAACTACATGGATGACATGAACGGTCAGCACTTTGGTATACCCAAGCTTTCATAA

Protein Analysis

287

Amino Acids

32.11

Weight (kDa)

6.43

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 63 1.5e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 78 9.8e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 1.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 8.9e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
AasI GACNNNNNNGTC 2 cut(s) 377, 487
AatII GACGTC 2 cut(s) 504, 704
Acc36I ACCTGC 1 cut(s) 532
AccI GTMKAC 2 cut(s) 629, 847
AccII CGCG 2 cut(s) 242, 468
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 9 cut(s) 22, 100, 221, 242, 245, 346, 365, 468, 587
AclWI GGATC 3 cut(s) 48, 489, 502
AcoI YGGCCR 4 cut(s) 145, 209, 298, 428
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 3 cut(s) 375, 501, 701
AfaI GTAC 3 cut(s) 260, 304, 353
AfiI CCNNNNNNNGG 3 cut(s) 70, 285, 430
AjnI CCWGG 2 cut(s) 284, 652
AluBI AGCT 3 cut(s) 91, 187, 856
AluI AGCT 3 cut(s) 91, 187, 856
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 3 cut(s) 48, 489, 502
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 8 cut(s) 53, 145, 209, 273, 298, 428, 551, 761
ApeKI GCWGC 4 cut(s) 97, 524, 709, 712
Asp700I GAANNNNTTC 2 cut(s) 15, 602
AspLEI GCGC 4 cut(s) 110, 250, 468, 541
AspS9I GGNCC 4 cut(s) 53, 150, 273, 761
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 150
BamHI GGATCC 1 cut(s) 494
BanII GRGCYC 2 cut(s) 65, 488
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BauI CACGAG 1 cut(s) 681
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 4 cut(s) 109, 511, 721, 724
BcgI CGANNNNNNTGC 6 cut(s) 92, 126, 516, 550, 688, 722
BciT130I CCWGG 2 cut(s) 286, 654
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 532
BfuI GTATCC 1 cut(s) 464
BglI GCCNNNNNGGC 2 cut(s) 153, 600
BisI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 525, 587, 710, 713
BlsI GCNGC 9 cut(s) 24, 99, 102, 244, 247, 526, 588, 711, 714
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 144, 286, 654
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 53, 150, 273, 761
BmiI GGNNCC 6 cut(s) 54, 62, 170, 290, 496, 624
BmrFI CCNGG 3 cut(s) 144, 286, 654
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 3 cut(s) 375, 501, 701
BsaJI CCNNGG 2 cut(s) 56, 360
BsaWI WCCGGW 3 cut(s) 171, 491, 619
BsaXI ACNNNNNCTCC 6 cut(s) 317, 347, 378, 408, 758, 788
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 285, 430
Bse118I RCCGGY 4 cut(s) 147, 165, 207, 553
Bse1I ACTGG 2 cut(s) 122, 332
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 2 cut(s) 286, 654
BseDI CCNNGG 2 cut(s) 56, 360
BseGI GGATG 3 cut(s) 10, 606, 826
BseLI CCNNNNNNNGG 3 cut(s) 70, 285, 430
BseMII CTCAG 2 cut(s) 74, 723
BseNI ACTGG 2 cut(s) 122, 332
BseRI GAGGAG 7 cut(s) 239, 281, 402, 419, 734, 737, 740
BseX3I CGGCCG 4 cut(s) 145, 209, 298, 428
BseXI GCAGC 4 cut(s) 109, 511, 721, 724
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 242, 468
Bsh1285I CGRYCG 6 cut(s) 148, 212, 301, 402, 431, 669
BshFI GGCC 8 cut(s) 55, 147, 211, 275, 300, 430, 553, 763
BsiEI CGRYCG 6 cut(s) 148, 212, 301, 402, 431, 669
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 70, 285, 430
BsmAI GTCTC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 8 cut(s) 55, 147, 211, 275, 300, 430, 553, 763
Bsp1286I GDGCHC 3 cut(s) 65, 207, 488
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 4 cut(s) 40, 315, 399, 494
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 9 cut(s) 22, 100, 221, 242, 245, 346, 365, 468, 587
BspANI GGCC 8 cut(s) 55, 147, 211, 275, 300, 430, 553, 763
BspCNI CTCAG 2 cut(s) 75, 724
BspEI TCCGGA 1 cut(s) 491
BspFNI CGCG 2 cut(s) 242, 468
BspLI GGNNCC 6 cut(s) 54, 62, 170, 290, 496, 624
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 3 cut(s) 48, 489, 502
BsrFI RCCGGY 4 cut(s) 147, 165, 207, 553
BsrI ACTGG 2 cut(s) 122, 332
BssAI RCCGGY 4 cut(s) 147, 165, 207, 553
BssECI CCNNGG 2 cut(s) 56, 360
BssMI GATC 4 cut(s) 40, 315, 399, 494
BssNAI GTATAC 1 cut(s) 848
BssNI GRCGYC 3 cut(s) 375, 501, 701
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 848
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 286, 654
Bst4CI ACNGT 3 cut(s) 451, 476, 833
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 3 cut(s) 375, 501, 701
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 83, 732
BstDSI CCRYGG 2 cut(s) 56, 360
BstF5I GGATG 3 cut(s) 10, 606, 826
BstFNI CGCG 2 cut(s) 242, 468
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 4 cut(s) 110, 250, 468, 541
BstKTI GATC 4 cut(s) 43, 318, 402, 497
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 4 cut(s) 40, 315, 399, 494
BstMCI CGRYCG 6 cut(s) 148, 212, 301, 402, 431, 669
BstMWI GCNNNNNNNGC 7 cut(s) 88, 97, 153, 162, 281, 513, 600
BstNI CCWGG 2 cut(s) 286, 654
BstSCI CCNGG 3 cut(s) 142, 284, 652
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 2 cut(s) 242, 468
BstV1I GCAGC 4 cut(s) 109, 511, 721, 724
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
BstZ17I GTATAC 1 cut(s) 848
BstZI CGGCCG 4 cut(s) 145, 209, 298, 428
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 8 cut(s) 55, 147, 211, 275, 300, 430, 553, 763
BtgI CCRYGG 2 cut(s) 56, 360
BtsCI GGATG 3 cut(s) 10, 606, 826
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 325, 573
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 4 cut(s) 110, 250, 468, 541
Cfr10I RCCGGY 4 cut(s) 147, 165, 207, 553
Cfr13I GGNCC 4 cut(s) 53, 150, 273, 761
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 2 cut(s) 130, 364
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 3 cut(s) 259, 303, 352
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 4 cut(s) 361, 772, 817, 826
CviQI GTAC 3 cut(s) 259, 303, 352
DdeI CTNAG 2 cut(s) 83, 732
DpnI GATC 4 cut(s) 42, 317, 401, 496
DpnII GATC 4 cut(s) 40, 315, 399, 494
DrdI GACNNNNNNGTC 2 cut(s) 377, 487
DseDI GACNNNNNNGTC 2 cut(s) 377, 487
EaeI YGGCCR 4 cut(s) 145, 209, 298, 428
EagI CGGCCG 4 cut(s) 145, 209, 298, 428
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 2 cut(s) 236, 380
EclXI CGGCCG 4 cut(s) 145, 209, 298, 428
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 65, 488
Eco47I GGWCC 1 cut(s) 150
Eco52I CGGCCG 4 cut(s) 145, 209, 298, 428
Eco57I CTGAAG 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 284, 652
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 65, 488
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 364, 775, 820, 829
FaiI YATR 8 cut(s) 281, 362, 773, 782, 818, 827, 848, 862
FatI CATG 4 cut(s) 360, 771, 816, 825
FblI GTMKAC 2 cut(s) 629, 847
Fnu4HI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 525, 587, 710, 713
FokI GGATG 3 cut(s) 17, 593, 833
FriOI GRGCYC 2 cut(s) 65, 488
Fsp4HI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 525, 587, 710, 713
GlaI GCGC 4 cut(s) 109, 249, 467, 540
GluI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 525, 587, 710, 713
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 8 cut(s) 55, 147, 211, 275, 300, 430, 553, 763
HgaI GACGC 2 cut(s) 130, 364
HhaI GCGC 4 cut(s) 110, 250, 468, 541
Hin1I GRCGYC 3 cut(s) 375, 501, 701
Hin1II CATG 4 cut(s) 364, 775, 820, 829
Hin6I GCGC 4 cut(s) 108, 248, 466, 539
HinP1I GCGC 4 cut(s) 108, 248, 466, 539
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 7 cut(s) 11, 139, 509, 581, 631, 640, 679
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 216, 630, 848
Hpy188I TCNGA 5 cut(s) 114, 342, 386, 480, 499
Hpy188III TCNNGA 2 cut(s) 319, 492
Hpy8I GTNNAC 3 cut(s) 216, 630, 848
Hpy99I CGWCG 9 cut(s) 380, 383, 386, 484, 503, 538, 631, 703, 706
HpyAV CCTTC 1 cut(s) 793
HpyCH4III ACNGT 3 cut(s) 451, 476, 833
HpyCH4IV ACGT 2 cut(s) 501, 701
HpyCH4V TGCA 5 cut(s) 97, 180, 527, 709, 784
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 97, 153, 162, 281, 513, 600
HpyF3I CTNAG 2 cut(s) 83, 732
HpySE526I ACGT 2 cut(s) 501, 701
Hsp92I GRCGYC 3 cut(s) 375, 501, 701
Hsp92II CATG 4 cut(s) 364, 775, 820, 829
HspAI GCGC 4 cut(s) 108, 248, 466, 539
Kpn2I TCCGGA 1 cut(s) 491
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
Kzo9I GATC 4 cut(s) 40, 315, 399, 494
LmnI GCTCC 6 cut(s) 60, 174, 202, 294, 406, 622
Lsp1109I GCAGC 4 cut(s) 109, 511, 721, 724
LweI GCATC 1 cut(s) 418
MabI ACCWGGT 1 cut(s) 652
MaeII ACGT 2 cut(s) 501, 701
MaeIII GTNAC 1 cut(s) 648
MalI GATC 4 cut(s) 42, 317, 401, 496
MboI GATC 4 cut(s) 40, 315, 399, 494
MboII GAAGA 4 cut(s) 80, 380, 448, 701
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 3 cut(s) 65, 207, 488
MlyI GAGTC 5 cut(s) 503, 590, 625, 634, 673
MmeI TCCRAC 4 cut(s) 18, 364, 503, 522
MroI TCCGGA 1 cut(s) 491
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 15, 602
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 2 cut(s) 22, 100
MspR9I CCNGG 3 cut(s) 144, 286, 654
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 286, 654
MvnI CGCG 2 cut(s) 242, 468
MwoI GCNNNNNNNGC 7 cut(s) 88, 97, 153, 162, 281, 513, 600
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 360
NdeII GATC 4 cut(s) 40, 315, 399, 494
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 4 cut(s) 364, 775, 820, 829
NlaIV GGNNCC 6 cut(s) 54, 62, 170, 290, 496, 624
NmeAIII GCCGAG 1 cut(s) 615
PaqCI CACCTGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 3 cut(s) 311, 378, 390
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 2 cut(s) 15, 602
PfeI GAWTC 2 cut(s) 11, 139
Pfl23II CGTACG 1 cut(s) 302
PflFI GACNNNGTC 3 cut(s) 374, 580, 643
PkrI GCNGC 9 cut(s) 24, 99, 102, 244, 247, 526, 588, 711, 714
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 5 cut(s) 503, 589, 625, 634, 673
PpsI GAGTC 5 cut(s) 503, 589, 625, 634, 673
Psp6I CCWGG 2 cut(s) 284, 652
PspGI CCWGG 2 cut(s) 284, 652
PspLI CGTACG 1 cut(s) 302
PspN4I GGNNCC 6 cut(s) 54, 62, 170, 290, 496, 624
PspPI GGNCC 4 cut(s) 53, 150, 273, 761
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 494
PsyI GACNNNGTC 3 cut(s) 374, 580, 643
PvuI CGATCG 1 cut(s) 402
RsaI GTAC 3 cut(s) 260, 304, 353
RsaNI GTAC 3 cut(s) 259, 303, 352
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SalI GTCGAC 1 cut(s) 628
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 9 cut(s) 23, 98, 101, 243, 246, 525, 587, 710, 713
Sau3AI GATC 4 cut(s) 40, 315, 399, 494
Sau96I GGNCC 4 cut(s) 53, 150, 273, 761
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 5 cut(s) 503, 590, 625, 634, 673
ScrFI CCNGG 3 cut(s) 144, 286, 654
SduI GDGCHC 3 cut(s) 65, 207, 488
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 150
SsiI CCGC 9 cut(s) 22, 100, 221, 242, 245, 346, 365, 468, 587
StyD4I CCNGG 3 cut(s) 142, 284, 652
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 451, 476, 833
TaiI ACGT 2 cut(s) 504, 704
TaqI TCGA 5 cut(s) 137, 398, 402, 629, 665
TaqII GACCGA 1 cut(s) 683
TatI WGTACW 1 cut(s) 351
TauI GCSGC 5 cut(s) 25, 103, 245, 248, 589
TfiI GAWTC 2 cut(s) 11, 139
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 332, 573
TseI GCWGC 4 cut(s) 97, 524, 709, 712
TspDTI ATGAA 5 cut(s) 595, 630, 760, 842, 849
TspGWI ACGGA 2 cut(s) 320, 593
TspRI CASTG 2 cut(s) 332, 573
Tth111I GACNNNGTC 3 cut(s) 374, 580, 643
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 629, 847
XmnI GAANNNNTTC 2 cut(s) 15, 602
ZraI GACGTC 2 cut(s) 502, 702
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.