Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0010037

Physical Location & Seq

Genomic Coordinates Reverse (-)

286703 .. 287035

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggtgttgttggagcttgtgagtggggtccggaataacgagatccaagggtcgatgatagagagcgaggattggtattttccgaggtgggcgtttgataaggtgtttaaggagatgaacgtggaggacattctcgaccgtcggatcatgcattgttacgatagcaagacgcattttgatacggtgaaccgaatggtgaagacggcgatgtggtgccttcaggaccggccggagatgaggccatcgatggggaaggtggctaagatgttggaagggacggtggatatcacggaacctaagaagcccactatatttttccttactgacgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

110

Amino Acids

13.02

Weight (kDa)

5.18

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34300
fragaria_vesca	FvH4_2g12390
malus_domestica	MD05G1039400.v1.1 MD05G1039500.v1.1 MD10G1044900.v1.1
prunus_persica	Prupe.8G051900_v2.0.a1
pyrus_communis	pycom05g03200 pycom05g03220 pycom10g03130 pycom10g03140
rosa_chinensis	RchiOBHm_Chr6g0272421
rosa_laevigata	RLG00000013671
rosa_multiflora	Rmu_co8482727.1_g000001 Rmu_sc0017109.1_g000001 Rmu_ssc0000204.1_g000064
rosa_rugosa	Rorug06G0069700
rosa_samantha	Rh6AG185500 Rh6BG188600 Rh6CG186600 Rh6DG178200
rosa_wichuraiana	Rw6G016020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	30
AclWI	GGATC	2 cut(s)	37, 152
AcoI	YGGCCR	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	248
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AlwI	GGATC	2 cut(s)	37, 152
Aor13HI	TCCGGA	1 cut(s)	30
AoxI	GGCC	2 cut(s)	227, 239
AspS9I	GGNCC	2 cut(s)	28, 223
AsuHPI	GGTGA	2 cut(s)	196, 208
AvaII	GGWCC	2 cut(s)	28, 223
BanI	GGYRCC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	206
BccI	CCATC	2 cut(s)	241, 250
BceAI	ACGGC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	331
Bme18I	GGWCC	2 cut(s)	28, 223
BmgT120I	GGNCC	2 cut(s)	28, 223
BmiI	GGNNCC	3 cut(s)	29, 215, 294
BpiI	GAAGAC	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	46, 83
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	30
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	46, 83
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseX3I	CGGCCG	1 cut(s)	227
Bsh1285I	CGRYCG	2 cut(s)	139, 230
BshFI	GGCC	2 cut(s)	229, 241
BshNI	GGYRCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	245
BsiEI	CGRYCG	2 cut(s)	139, 230
BsiSI	CCGG	3 cut(s)	31, 226, 230
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	229, 241
Bsp13I	TCCGGA	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	42, 144
BspANI	GGCC	2 cut(s)	229, 241
BspDI	ATCGAT	1 cut(s)	245
BspEI	TCCGGA	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	29, 215, 294
BspPI	GGATC	2 cut(s)	37, 152
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	46, 83
BssMI	GATC	2 cut(s)	42, 144
BssT1I	CCWWGG	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	140, 184, 280
BstDEI	CTNAG	2 cut(s)	261, 297
BstKTI	GATC	2 cut(s)	45, 147
BstMBI	GATC	2 cut(s)	42, 144
BstMCI	CGRYCG	2 cut(s)	139, 230
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BstZI	CGGCCG	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	229, 241
BsuTUI	ATCGAT	1 cut(s)	245
BtgZI	GCGATG	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	28, 223
ClaI	ATCGAT	1 cut(s)	245
CseI	GACGC	1 cut(s)	178
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	5 cut(s)	16, 229, 241, 260, 304
CviKI_1	RGCY	5 cut(s)	16, 229, 241, 260, 304
DdeI	CTNAG	2 cut(s)	261, 297
DpnI	GATC	2 cut(s)	44, 146
DpnII	GATC	2 cut(s)	42, 144
EaeI	YGGCCR	1 cut(s)	227
EagI	CGGCCG	1 cut(s)	227
EclXI	CGGCCG	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	28, 223
Eco52I	CGGCCG	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	149, 311
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	147
FspBI	CTAG	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	229, 241
HapII	CCGG	3 cut(s)	31, 226, 230
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	151
HpaII	CCGG	3 cut(s)	31, 226, 230
HphI	GGTGA	2 cut(s)	196, 208
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	84, 144
Hpy188III	TCNNGA	3 cut(s)	31, 134, 221
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	227, 247, 266
HpyCH4III	ACNGT	3 cut(s)	140, 184, 280
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	261, 297
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	42, 144
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	44, 206, 239, 243
MaeI	CTAG	1 cut(s)	331
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	44, 146
MboI	GATC	2 cut(s)	42, 144
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	1 cut(s)	42
MmeI	TCCRAC	2 cut(s)	122, 249
MnlI	CCTC	4 cut(s)	61, 78, 118, 231
Mph1103I	ATGCAT	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	30
MseI	TTAA	1 cut(s)	108
MspI	CCGG	3 cut(s)	31, 226, 230
NdeII	GATC	2 cut(s)	42, 144
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	3 cut(s)	29, 215, 294
NsiI	ATGCAT	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	29, 215, 294
PspPI	GGNCC	2 cut(s)	28, 223
PsuI	RGATCY	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	42, 144
Sau96I	GGNCC	2 cut(s)	28, 223
SetI	ASST	6 cut(s)	18, 89, 105, 123, 258, 298
SinI	GGWCC	2 cut(s)	28, 223
SspMI	CTAG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	140, 184, 280
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	53, 135, 245
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	28, 223
XspI	CTAG	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.