Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010794

Physical Location & Seq

Genomic Coordinates Forward (+)

3655772 .. 3657349

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCCTGCTCTCAGCTCCACCATGACTGAGGGCAAGATCGTCTCTTGGGTCAAGTCCGAGGGCGACAAGCTCTCCAAGGGCGAGAGCGTCGTCGTCGTCGAGTCCGATAAGGCCGACATGGACGTCGAGACTTTCTACGACGGTTACCTGGCTTCGATTATGGTGGAGGAGGGCGGCGTCGCCGCCGTCGGTTCGGCTATTGCTCTGTTGGCCGAGACTGAGGACGAGATTGCCGAGGCCAAGGCCAAGGCCGGTTCTTCATCGGCAGCTCCAGCGGCACCAGCTGCTCCGGAGCCACTACCGGAGAAAATTCCGGATAATGTGGGTCCTGCGGTGGTCCCTAAGGCGGCGGCTACTGTGGTGGCGGTGGCTTCGACCCACCCGGCATCAGAGGGAGGGAAGAGAATCGTGGCGTCGCCGTATGCGAAGAAGCTCGCAAAGGACTTGAAGGTGGATTTGGGGTCAGTGGTGGGAAGTGGACCACTGGGGAGGATTGTGGCTAAGGATGTTGAAGCTTTTGCTGCTCAGCCGACGGTGGCGGCTGCTGCTGAACCGAGTGTTGGGAAGTCAGCTACTGCTGTGGCGGCGGAGGCGGGAATTCAGTTGGGATCGGTGGTTCCTTTTACGACAATGCAGGGGGCTGTGAGTAGAAACATGCTTGAGAGTCTCTCAGTGCCAACTTTCAGAGTAGGATACACTATCACCACTGATGCGCTCGATGCTCTGTACAAAAAGATCAATCTGTCCAAGGGAGTTACCATGACAGCATTGCTTGCAAAGGCTACAGCACTTGCATTGGTCAAACATCCTGTTGTCAACTCCGGCTGTAGAGATGGTAAGAGCTTTACATACAACAGCAGCATTAACATTGCAGTCGCTGTGGCAATCGATGGGGGATTGATTACACCAGTGCTTCAGGATGCGGACAAGGTTGACATATATACATTGTCGAGAAAGTGGAAGGAGTTAGTCGATAAGGCCAGGGCCAAGCAGCTACAACCTCACGAGTACAATACAGGTACTATTATTACTTACCTAAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0019904 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

349

Amino Acids

35.81

Weight (kDa)

5.58

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	1 - 69	1.6e-14	Biotin-requiring enzyme
E3_binding	PF02817	136 - 171	1.4e-13	e3 binding domain
2-oxoacid_dh	PF00198	205 - 342	1.6e-31	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34430
fragaria_vesca	FvH4_2g12130
malus_domestica	MD05G1040900.v1.1 MD10G1046900.v1.1
prunus_persica	Prupe.8G056000_v2.0.a1
pyrus_communis	pycom05g03360 pycom10g03320
rosa_chinensis	RchiOBHm_Chr6g0272101 RchiOBHm_Chr6g0272111
rosa_laevigata	RLG00000013702
rosa_multiflora	Rmu_sc0013301.1_g000004 Rmu_sc0032599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196600
rosa_rugosa	Rorug06G0065600
rosa_samantha	Rh6AG182900 Rh6BG184200 Rh6CG184100 Rh6DG175700
rosa_wichuraiana	Rw0G009140 Rw6G015740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	277
AccIII	TCCGGA	2 cut(s)	289, 313
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	309, 597
AcuI	CTGAAG	1 cut(s)	899
AcyI	GRCGYC	3 cut(s)	123, 177, 413
AfaI	GTAC	3 cut(s)	728, 1010, 1021
AfiI	CCNNNNNNNGG	2 cut(s)	346, 560
AgsI	TTSAA	2 cut(s)	448, 512
AjnI	CCWGG	2 cut(s)	147, 980
AjuI	GAANNNNNNNTTGG	4 cut(s)	440, 472, 543, 575
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
AluBI	AGCT	9 cut(s)	15, 70, 269, 284, 433, 515, 572, 843, 994
AluI	AGCT	9 cut(s)	15, 70, 269, 284, 433, 515, 572, 843, 994
Alw26I	GTCTC	4 cut(s)	46, 122, 209, 671
AlwI	GGATC	1 cut(s)	616
AlwNI	CAGNNNCTG	2 cut(s)	575, 878
Aor13HI	TCCGGA	2 cut(s)	289, 313
AoxI	GGCC	7 cut(s)	111, 210, 237, 243, 249, 978, 984
ApeKI	GCWGC	7 cut(s)	266, 284, 521, 542, 545, 858, 991
ApoI	RAATTY	2 cut(s)	309, 597
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	4 cut(s)	326, 337, 479, 984
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	694
AvaII	GGWCC	3 cut(s)	326, 337, 479
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	1004
BbvI	GCAGC	7 cut(s)	271, 278, 508, 529, 532, 870, 1003
BccI	CCATC	2 cut(s)	827, 884
BceAI	ACGGC	2 cut(s)	170, 403
BciT130I	CCWGG	2 cut(s)	149, 982
BciVI	GTATCC	1 cut(s)	686
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	4 cut(s)	46, 122, 209, 671
BfaI	CTAG	1 cut(s)	1045
BfmI	CTRYAG	2 cut(s)	783, 826
BfuI	GTATCC	1 cut(s)	686
BlpI	GCTNAGC	1 cut(s)	525
Bme1390I	CCNGG	3 cut(s)	149, 383, 982
Bme18I	GGWCC	3 cut(s)	326, 337, 479
BmgT120I	GGNCC	4 cut(s)	326, 337, 479, 984
BmiI	GGNNCC	5 cut(s)	279, 294, 327, 339, 618
BmrFI	CCNGG	3 cut(s)	149, 383, 982
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	4 cut(s)	395, 700, 709, 910
BmuI	ACTGGG	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	888
BsaHI	GRCGYC	3 cut(s)	123, 177, 413
BsaJI	CCNNGG	7 cut(s)	57, 75, 234, 240, 246, 747, 981
BsaWI	WCCGGW	3 cut(s)	289, 301, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 560
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	489, 908
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	767, 867
BseAI	TCCGGA	2 cut(s)	289, 313
BseBI	CCWGG	2 cut(s)	149, 982
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	7 cut(s)	57, 75, 234, 240, 246, 747, 981
BseGI	GGATG	3 cut(s)	511, 805, 925
BseLI	CCNNNNNNNGG	2 cut(s)	346, 560
BseMI	GCAATG	2 cut(s)	767, 867
BseMII	CTCAG	5 cut(s)	18, 25, 210, 539, 684
BseNI	ACTGG	2 cut(s)	489, 908
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	7 cut(s)	271, 278, 508, 529, 532, 870, 1003
BshFI	GGCC	7 cut(s)	113, 212, 239, 245, 251, 980, 986
BshNI	GGYRCC	1 cut(s)	277
BshVI	ATCGAT	1 cut(s)	888
BsiSI	CCGG	6 cut(s)	252, 290, 302, 314, 383, 822
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	346, 560
BsmAI	GTCTC	4 cut(s)	46, 122, 209, 671
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	7 cut(s)	113, 212, 239, 245, 251, 980, 986
Bsp13I	TCCGGA	2 cut(s)	289, 313
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	3 cut(s)	36, 608, 735
Bsp1720I	GCTNAGC	1 cut(s)	525
BspANI	GGCC	7 cut(s)	113, 212, 239, 245, 251, 980, 986
BspCNI	CTCAG	5 cut(s)	19, 24, 211, 538, 683
BspDI	ATCGAT	1 cut(s)	888
BspEI	TCCGGA	2 cut(s)	289, 313
BspLI	GGNNCC	5 cut(s)	279, 294, 327, 339, 618
BspPI	GGATC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	767, 867
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	489, 908
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	7 cut(s)	57, 75, 234, 240, 246, 747, 981
BssMI	GATC	3 cut(s)	36, 608, 735
BssNI	GRCGYC	3 cut(s)	123, 177, 413
BssSI	CACGAG	1 cut(s)	1004
BssT1I	CCWWGG	4 cut(s)	75, 240, 246, 747
Bst2BI	CACGAG	1 cut(s)	1004
Bst2UI	CCWGG	2 cut(s)	149, 982
Bst4CI	ACNGT	3 cut(s)	143, 358, 535
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	3 cut(s)	123, 177, 413
BstAPI	GCANNNNNTGC	2 cut(s)	284, 773
BstAUI	TGTACA	1 cut(s)	726
BstC8I	GCNNGC	3 cut(s)	6, 435, 774
BstDEI	CTNAG	7 cut(s)	11, 27, 219, 342, 501, 525, 670
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	3 cut(s)	511, 805, 925
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	3 cut(s)	39, 611, 738
BstMAI	GTCTC	4 cut(s)	46, 122, 209, 671
BstMBI	GATC	3 cut(s)	36, 608, 735
BstNI	CCWGG	2 cut(s)	149, 982
BstNSI	RCATGY	1 cut(s)	658
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	147, 381, 980
BstSFI	CTRYAG	2 cut(s)	783, 826
BstV1I	GCAGC	7 cut(s)	271, 278, 508, 529, 532, 870, 1003
Bsu15I	ATCGAT	1 cut(s)	888
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	7 cut(s)	113, 212, 239, 245, 251, 980, 986
BsuTUI	ATCGAT	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	511, 805, 925
BtsIMutI	CAGTG	5 cut(s)	471, 482, 678, 705, 915
Cac8I	GCNNGC	3 cut(s)	6, 435, 774
CaiI	CAGNNNCTG	2 cut(s)	575, 878
CfoI	GCGC	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	326, 337, 479, 984
ClaI	ATCGAT	1 cut(s)	888
CseI	GACGC	3 cut(s)	76, 166, 402
Csp6I	GTAC	3 cut(s)	727, 1009, 1020
CviAII	CATG	4 cut(s)	22, 118, 655, 760
CviQI	GTAC	3 cut(s)	727, 1009, 1020
DdeI	CTNAG	7 cut(s)	11, 27, 219, 342, 501, 525, 670
DpnI	GATC	3 cut(s)	38, 610, 737
DpnII	GATC	3 cut(s)	36, 608, 735
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	602
Eco130I	CCWWGG	4 cut(s)	75, 240, 246, 747
Eco47I	GGWCC	3 cut(s)	326, 337, 479
Eco57I	CTGAAG	1 cut(s)	899
Eco81I	CCTNAGG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	147, 980
EcoT14I	CCWWGG	4 cut(s)	75, 240, 246, 747
ErhI	CCWWGG	4 cut(s)	75, 240, 246, 747
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	4 cut(s)	25, 121, 658, 763
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	4 cut(s)	21, 117, 654, 759
FauI	CCCGC	1 cut(s)	586
FokI	GGATG	3 cut(s)	518, 792, 932
FspBI	CTAG	1 cut(s)	1045
GlaI	GCGC	1 cut(s)	714
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	113, 212, 239, 245, 251, 980, 986
HapII	CCGG	6 cut(s)	252, 290, 302, 314, 383, 822
HgaI	GACGC	3 cut(s)	76, 166, 402
HhaI	GCGC	1 cut(s)	715
Hin1I	GRCGYC	3 cut(s)	123, 177, 413
Hin1II	CATG	4 cut(s)	25, 121, 658, 763
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	2 cut(s)	817, 934
HindII	GTYRAC	2 cut(s)	817, 934
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	3 cut(s)	101, 405, 664
HpaII	CCGG	6 cut(s)	252, 290, 302, 314, 383, 822
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	3 cut(s)	479, 817, 934
Hpy188I	TCNGA	4 cut(s)	58, 106, 391, 686
Hpy188III	TCNNGA	6 cut(s)	127, 290, 314, 917, 951, 1004
Hpy8I	GTNNAC	3 cut(s)	479, 817, 934
HpyAV	CCTTC	2 cut(s)	442, 955
HpyCH4III	ACNGT	3 cut(s)	143, 358, 535
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	634, 776, 794, 872
HpyF3I	CTNAG	7 cut(s)	11, 27, 219, 342, 501, 525, 670
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	3 cut(s)	123, 177, 413
Hsp92II	CATG	4 cut(s)	25, 121, 658, 763
HspAI	GCGC	1 cut(s)	713
Kpn2I	TCCGGA	2 cut(s)	289, 313
Kzo9I	GATC	3 cut(s)	36, 608, 735
LmnI	GCTCC	4 cut(s)	20, 274, 292, 292
Lsp1109I	GCAGC	7 cut(s)	271, 278, 508, 529, 532, 870, 1003
LweI	GCATC	4 cut(s)	395, 700, 709, 910
MaeI	CTAG	1 cut(s)	1045
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	143, 754
MalI	GATC	3 cut(s)	38, 610, 737
MboI	GATC	3 cut(s)	36, 608, 735
MboII	GAAGA	3 cut(s)	249, 412, 439
MluCI	AATT	2 cut(s)	309, 597
MlyI	GAGTC	2 cut(s)	110, 673
MroI	TCCGGA	2 cut(s)	289, 313
MseI	TTAA	1 cut(s)	864
MspA1I	CMGCKG	2 cut(s)	275, 284
MspI	CCGG	6 cut(s)	252, 290, 302, 314, 383, 822
MspR9I	CCNGG	3 cut(s)	149, 383, 982
MvaI	CCWGG	2 cut(s)	149, 982
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	3 cut(s)	36, 608, 735
NlaIII	CATG	4 cut(s)	25, 121, 658, 763
NlaIV	GGNNCC	5 cut(s)	279, 294, 327, 339, 618
NmeAIII	GCCGAG	2 cut(s)	238, 259
NspI	RCATGY	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	4 cut(s)	96, 102, 231, 422
PfeI	GAWTC	1 cut(s)	405
PleI	GAGTC	2 cut(s)	109, 672
PpsI	GAGTC	2 cut(s)	109, 672
PpuMI	RGGWCCY	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	147, 980
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	147, 980
PspN4I	GGNNCC	5 cut(s)	279, 294, 327, 339, 618
PspPI	GGNCC	4 cut(s)	326, 337, 479, 984
PspPPI	RGGWCCY	1 cut(s)	326
PstNI	CAGNNNCTG	2 cut(s)	575, 878
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	728, 1010, 1021
RsaNI	GTAC	3 cut(s)	727, 1009, 1020
SaqAI	TTAA	1 cut(s)	864
Sau3AI	GATC	3 cut(s)	36, 608, 735
Sau96I	GGNCC	4 cut(s)	326, 337, 479, 984
SchI	GAGTC	2 cut(s)	110, 673
ScrFI	CCNGG	3 cut(s)	149, 383, 982
SfaNI	GCATC	4 cut(s)	395, 700, 709, 910
SfcI	CTRYAG	2 cut(s)	783, 826
SinI	GGWCC	3 cut(s)	326, 337, 479
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	2 cut(s)	309, 597
SspMI	CTAG	1 cut(s)	1045
StyD4I	CCNGG	3 cut(s)	147, 381, 980
StyI	CCWWGG	4 cut(s)	75, 240, 246, 747
TaaI	ACNGT	3 cut(s)	143, 358, 535
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	8 cut(s)	99, 126, 155, 374, 717, 888, 950, 972
TasI	AATT	2 cut(s)	309, 597
TatI	WGTACW	2 cut(s)	726, 1008
TauI	GCSGC	7 cut(s)	177, 185, 278, 350, 353, 542, 587
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	5 cut(s)	471, 489, 678, 712, 915
TseI	GCWGC	7 cut(s)	266, 284, 521, 542, 545, 858, 991
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	5 cut(s)	471, 489, 678, 712, 915
VpaK11BI	GGWCC	3 cut(s)	326, 337, 479
XapI	RAATTY	2 cut(s)	309, 597
XceI	RCATGY	1 cut(s)	658
XspI	CTAG	1 cut(s)	1045
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.