Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010794

Physical Location & Seq

Genomic Coordinates Reverse (-)

8674713 .. 8689522

Gene Structure 14810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0065600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTGTTAACGACATATGGTTCTCTGTTGCAATTGCTGTTAAGGATGTTGTTCAGTATGATCACTCCAATGCTGCTTTTCCTACTATGATTTATATCGACATCGATGGAGAATTCAAACGATACCTGTTCTTTCCTGCCATGCCCTGCTCAATTAACTTTCATAAACAGCACAGAGTTATAATGTGGTTTAATTCTGATTCCAGATTCAATATCAATGGAATACTGAATTCTCAAAAGGATTGCGGTACTTCCCTGCCATGCCCTGCTGAAGTAACTATCCTAAGCAGCAGAGCCCTGCAGAGATTGAGATTGATGGAGAATTCAAACGATACCTGTTCTTTCCTGCCATGCCTTGCTCAAGTAACTGTCATAAACAGCAGAGAGGATTGCTGTTCTTTCCTGCGATGCCGTGTTGAAGTAACTATCCTAAGCAGCAGAGCCCTGCAGAGATCGAGATTGATGGAGAATTCAAACGATACCCGTTCTTTCCTGCCATGCCTTGCTCAAGTAACTATCATAAACAGCAGAGAGGATTGCTGTTCTTTCCTGCGATGCCGTGCTGAAGTAACTATCCTAAGCAGCAGAGCCCTGCAGAGGTTGATAGAGATGGTGGTGTCTGATAGGAGCATTTTAATGTGGTACATTGGAATAGATGATGATGAAATGAGCATTAGGTCCACACTTACCTATAAATGGTGGAGAAAAATGGAAATTCAGCCCAATTTCCTGCAGAAGCAAAACTGGAAAACTGGACCTTTGCAAAATTCTGCGTTTTCAAGTAAGAAGAAGAAGAAGAAGAAGGAGCCGAGAATATCATATCCTCCATCGTCCACCTTGAAGGCTTGCTTCCAAGATTCAAGATTTCAACGTTTCAAGCACTCCATCTCCATCTCCAACTCACGGTGTGTACCCTCAATCCCCGGAATAGAACGATCCCTATTTGCTTATACTACTAACGATGTTTTCAGGGTTAAATTATGCGCTTGCTTTGAGCGTATCAGTGTCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0019904 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

338

Amino Acids

39.02

Weight (kDa)

9.25

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34430
fragaria_vesca	FvH4_2g12130
malus_domestica	MD05G1040900.v1.1 MD10G1046900.v1.1
prunus_persica	Prupe.8G056000_v2.0.a1
pyrus_communis	pycom05g03360 pycom10g03320
rosa_chinensis	RchiOBHm_Chr6g0272101 RchiOBHm_Chr6g0272111
rosa_laevigata	RLG00000013702
rosa_multiflora	Rmu_sc0013301.1_g000004 Rmu_sc0032599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196600
rosa_rugosa	Rorug06G0065600
rosa_samantha	Rh6AG182900 Rh6BG184200 Rh6CG184100 Rh6DG175700
rosa_wichuraiana	Rw0G009140 Rw6G015740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AciI	CCGC	1 cut(s)	246
AclI	AACGTT	1 cut(s)	871
AclWI	GGATC	1 cut(s)	930
AcsI	RAATTY	6 cut(s)	113, 229, 322, 469, 714, 766
AcuI	CTGAAG	2 cut(s)	291, 585
AdeI	CACNNNGTG	1 cut(s)	908
AfaI	GTAC	3 cut(s)	250, 644, 912
AfiI	CCNNNNNNNGG	3 cut(s)	597, 696, 903
AlwI	GGATC	1 cut(s)	930
ApeKI	GCWGC	4 cut(s)	74, 288, 435, 582
ApoI	RAATTY	6 cut(s)	113, 229, 322, 469, 714, 766
AspLEI	GCGC	1 cut(s)	986
AspS9I	GGNCC	2 cut(s)	678, 755
AsuC2I	CCSGG	1 cut(s)	924
AvaII	GGWCC	2 cut(s)	678, 755
BanII	GRGCYC	3 cut(s)	298, 445, 592
BbvI	GCAGC	4 cut(s)	61, 300, 447, 594
BccI	CCATC	7 cut(s)	101, 310, 457, 604, 835, 893, 899
BceAI	ACGGC	2 cut(s)	396, 543
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	924
BfmI	CTRYAG	4 cut(s)	299, 446, 593, 731
BisI	GCNGC	4 cut(s)	75, 289, 436, 583
BlsI	GCNGC	4 cut(s)	76, 290, 437, 584
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	2 cut(s)	678, 755
BmgT120I	GGNCC	2 cut(s)	678, 755
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	2 cut(s)	398, 545
Bpu10I	CCTNAGC	3 cut(s)	284, 431, 578
BpuEI	CTTGAG	2 cut(s)	345, 492
BpuMI	CCSGG	1 cut(s)	924
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	922
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	3 cut(s)	597, 696, 903
Bse1I	ACTGG	2 cut(s)	749, 757
Bse8I	GATNNNNATC	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	3 cut(s)	597, 696, 903
BseNI	ACTGG	2 cut(s)	749, 757
BseXI	GCAGC	4 cut(s)	61, 300, 447, 594
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	924
BslI	CCNNNNNNNGG	3 cut(s)	597, 696, 903
Bsp1286I	GDGCHC	3 cut(s)	298, 445, 592
Bsp143I	GATC	3 cut(s)	61, 452, 935
BspACI	CCGC	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	807
BspMAI	CTGCAG	4 cut(s)	303, 450, 597, 735
BspPI	GGATC	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	749, 757
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	3 cut(s)	61, 452, 935
Bst4CI	ACNGT	2 cut(s)	370, 906
BstC8I	GCNNGC	2 cut(s)	847, 988
BstDEI	CTNAG	3 cut(s)	284, 431, 578
BstF5I	GGATG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	986
BstKTI	GATC	3 cut(s)	64, 455, 938
BstMBI	GATC	3 cut(s)	61, 452, 935
BstSCI	CCNGG	1 cut(s)	922
BstSFI	CTRYAG	4 cut(s)	299, 446, 593, 731
BstV1I	GCAGC	4 cut(s)	61, 300, 447, 594
Bsu15I	ATCGAT	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	105
BtgZI	GCGATG	2 cut(s)	421, 568
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	1009
Cac8I	GCNNGC	2 cut(s)	847, 988
CfoI	GCGC	1 cut(s)	986
Cfr13I	GGNCC	2 cut(s)	678, 755
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	249, 643, 911
CviAII	CATG	4 cut(s)	142, 261, 351, 498
CviJI	RGCY	7 cut(s)	5, 296, 443, 590, 721, 808, 845
CviKI_1	RGCY	7 cut(s)	5, 296, 443, 590, 721, 808, 845
CviQI	GTAC	3 cut(s)	249, 643, 911
DdeI	CTNAG	3 cut(s)	284, 431, 578
DpnI	GATC	3 cut(s)	63, 454, 937
DpnII	GATC	3 cut(s)	61, 452, 935
DraIII	CACNNNGTG	1 cut(s)	908
Eco24I	GRGCYC	3 cut(s)	298, 445, 592
Eco47I	GGWCC	2 cut(s)	678, 755
Eco57I	CTGAAG	2 cut(s)	291, 585
EcoRI	GAATTC	4 cut(s)	113, 229, 322, 469
EcoT38I	GRGCYC	3 cut(s)	298, 445, 592
FaeI	CATG	4 cut(s)	145, 264, 354, 501
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FatI	CATG	4 cut(s)	141, 260, 350, 497
FauNDI	CATATG	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	4 cut(s)	75, 289, 436, 583
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	3 cut(s)	298, 445, 592
Fsp4HI	GCNGC	4 cut(s)	75, 289, 436, 583
GlaI	GCGC	1 cut(s)	985
GluI	GCNGC	4 cut(s)	75, 289, 436, 583
HapII	CCGG	1 cut(s)	924
HhaI	GCGC	1 cut(s)	986
Hin1II	CATG	4 cut(s)	145, 264, 354, 501
Hin6I	GCGC	1 cut(s)	984
HinP1I	GCGC	1 cut(s)	984
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	200, 207, 857
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	924
Hpy166II	GTNNAC	4 cut(s)	10, 681, 834, 911
Hpy188I	TCNGA	2 cut(s)	199, 622
Hpy188III	TCNNGA	3 cut(s)	204, 456, 861
Hpy8I	GTNNAC	4 cut(s)	10, 681, 834, 911
HpyAV	CCTTC	2 cut(s)	796, 835
HpyCH4III	ACNGT	2 cut(s)	370, 906
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	6 cut(s)	32, 301, 448, 595, 733, 763
HpyF3I	CTNAG	3 cut(s)	284, 431, 578
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	4 cut(s)	145, 264, 354, 501
HspAI	GCGC	1 cut(s)	984
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	61, 452, 935
LmnI	GCTCC	2 cut(s)	627, 805
Lsp1109I	GCAGC	4 cut(s)	61, 300, 447, 594
LweI	GCATC	2 cut(s)	398, 545
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	5 cut(s)	274, 364, 421, 511, 568
MalI	GATC	3 cut(s)	63, 454, 937
MboI	GATC	3 cut(s)	61, 452, 935
MboII	GAAGA	5 cut(s)	799, 802, 805, 808, 811
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	3 cut(s)	298, 445, 592
MmeI	TCCRAC	1 cut(s)	921
MnlI	CCTC	5 cut(s)	379, 526, 591, 834, 925
MseI	TTAA	6 cut(s)	9, 42, 156, 192, 635, 975
MslI	CAYNNNNRTG	2 cut(s)	69, 635
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	924
MunI	CAATTG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	924
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	3 cut(s)	61, 452, 935
NlaIII	CATG	4 cut(s)	145, 264, 354, 501
NlaIV	GGNNCC	1 cut(s)	807
NmeAIII	GCCGAG	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	200, 207, 857
PkrI	GCNGC	4 cut(s)	76, 290, 437, 584
PsiI	TTATAA	1 cut(s)	182
Psp1406I	AACGTT	1 cut(s)	871
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	2 cut(s)	678, 755
PstI	CTGCAG	4 cut(s)	303, 450, 597, 735
RsaI	GTAC	3 cut(s)	250, 644, 912
RsaNI	GTAC	3 cut(s)	249, 643, 911
RseI	CAYNNNNRTG	2 cut(s)	69, 635
SaqAI	TTAA	6 cut(s)	9, 42, 156, 192, 635, 975
SatI	GCNGC	4 cut(s)	75, 289, 436, 583
Sau3AI	GATC	3 cut(s)	61, 452, 935
Sau96I	GGNCC	2 cut(s)	678, 755
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	3 cut(s)	298, 445, 592
SetI	ASST	8 cut(s)	129, 338, 602, 680, 692, 760, 839, 874
SfaNI	GCATC	2 cut(s)	398, 545
SfcI	CTRYAG	4 cut(s)	299, 446, 593, 731
SinI	GGWCC	2 cut(s)	678, 755
SmiMI	CAYNNNNRTG	2 cut(s)	69, 635
SmlI	CTYRAG	2 cut(s)	360, 507
SmoI	CTYRAG	2 cut(s)	360, 507
SsiI	CCGC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	922
TaaI	ACNGT	2 cut(s)	370, 906
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	3 cut(s)	99, 105, 455
TfiI	GAWTC	3 cut(s)	200, 207, 857
Tru1I	TTAA	6 cut(s)	9, 42, 156, 192, 635, 975
Tru9I	TTAA	6 cut(s)	9, 42, 156, 192, 635, 975
TscAI	CASTG	1 cut(s)	1009
TseI	GCWGC	4 cut(s)	74, 288, 435, 582
TspDTI	ATGAA	2 cut(s)	152, 678
TspRI	CASTG	1 cut(s)	1009
VpaK11BI	GGWCC	2 cut(s)	678, 755
XapI	RAATTY	6 cut(s)	113, 229, 322, 469, 714, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.