Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010794

Physical Location & Seq

Genomic Coordinates Reverse (-)

32175055 .. 32175855

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTCACCTTCTCAACACCTCCTTCATCCCCGGCTCCCGAACCCTCGCCCGCATCCCGACTACTCCGGTCCTCATCTCCTGCCGCCGCAGCAGCAGGTCCCAAGTCCAGGCCAAGATCCGAGAAATCTTCATGCCGGCGCTCAGCTCCACCATGACCGAGGGCAAGATCGTGTCCTGGATCAAGTCCGAGGGAGACAAGCTCTCCAAGGGCGAGAGCGTCGTCGTCGTCGAGTCCGATAAGGCTGACATGGACGTCGAGACTTTCTACGACGGATACTTGGCCTCCATTATGGTCGAGGAAGGCGGCGTTGCCCCCGTCGGCTCCGCCATTGCGCTCTTGGCCGAGACCCAAGACGAGATCGCCGAGGCCAAGGCCAAAGCCACTTCTTCATCATCACCTCCTCAGGAGACCAAAATTCCGGAAAATGCGGCTCCCGCGGCGGCCCCTAAGGCGGCGGCGGTGGCGGCAGCTCCGGTGGTGTCTTCTACACATCCGGCTTCAGAGGGAGGGAAGAGAATCGTGGCGTCACCTTACGCGAAGAAGCTGGCGAAGGAGTTGAAGGTTGAGTTGGGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0019904 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

193

Amino Acids

20.18

Weight (kDa)

6.76

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	42 - 113	3.6e-16	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34430
fragaria_vesca	FvH4_2g12130
malus_domestica	MD05G1040900.v1.1 MD10G1046900.v1.1
prunus_persica	Prupe.8G056000_v2.0.a1
pyrus_communis	pycom05g03360 pycom10g03320
rosa_chinensis	RchiOBHm_Chr6g0272101 RchiOBHm_Chr6g0272111
rosa_laevigata	RLG00000013702
rosa_multiflora	Rmu_sc0013301.1_g000004 Rmu_sc0032599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196600
rosa_rugosa	Rorug06G0065600
rosa_samantha	Rh6AG182900 Rh6BG184200 Rh6CG184100 Rh6DG175700
rosa_wichuraiana	Rw0G009140 Rw6G015740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AatII	GACGTC	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	87
AccII	CGCG	2 cut(s)	440, 539
AccIII	TCCGGA	1 cut(s)	421
AclWI	GGATC	2 cut(s)	112, 188
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	2 cut(s)	255, 527
AfiI	CCNNNNNNNGG	2 cut(s)	109, 454
AgsI	TTSAA	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	108, 176
AjuI	GAANNNNNNNTTGG	1 cut(s)	554
AluBI	AGCT	4 cut(s)	147, 202, 473, 547
AluI	AGCT	4 cut(s)	147, 202, 473, 547
Alw26I	GTCTC	4 cut(s)	189, 254, 341, 404
AlwI	GGATC	2 cut(s)	112, 188
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	6 cut(s)	111, 282, 342, 369, 375, 444
ApeKI	GCWGC	3 cut(s)	90, 93, 470
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	2 cut(s)	142, 337
AspS9I	GGNCC	3 cut(s)	70, 99, 445
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	390, 522
AvaII	GGWCC	2 cut(s)	70, 99
AxyI	CCTNAGG	2 cut(s)	405, 450
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	102, 105, 482
BciT130I	CCWGG	2 cut(s)	110, 178
BciVI	GTATCC	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	4 cut(s)	189, 254, 341, 404
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	452
BlpI	GCTNAGC	1 cut(s)	143
Bme1390I	CCNGG	3 cut(s)	33, 110, 178
Bme18I	GGWCC	2 cut(s)	70, 99
BmgT120I	GGNCC	3 cut(s)	70, 99, 445
BmiI	GGNNCC	5 cut(s)	37, 101, 325, 435, 447
BmrFI	CCNGG	3 cut(s)	33, 110, 178
BmsI	GCATC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
Bpu1102I	GCTNAGC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	33
BsaHI	GRCGYC	2 cut(s)	255, 527
BsaI	GGTCTC	2 cut(s)	341, 404
BsaJI	CCNNGG	7 cut(s)	31, 159, 189, 207, 366, 372, 438
BsaWI	WCCGGW	3 cut(s)	67, 421, 475
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 454
Bse118I	RCCGGY	1 cut(s)	136
Bse21I	CCTNAGG	2 cut(s)	405, 450
Bse3DI	GCAATG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	110, 178
BseDI	CCNNGG	7 cut(s)	31, 159, 189, 207, 366, 372, 438
BseGI	GGATG	3 cut(s)	27, 54, 493
BseLI	CCNNNNNNNGG	2 cut(s)	109, 454
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	157, 419
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	102, 105, 482
Bsh1236I	CGCG	2 cut(s)	440, 539
BshFI	GGCC	6 cut(s)	113, 284, 344, 371, 377, 446
BsiSI	CCGG	6 cut(s)	33, 68, 137, 422, 476, 497
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	109, 454
BsmAI	GTCTC	4 cut(s)	189, 254, 341, 404
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	6 cut(s)	113, 284, 344, 371, 377, 446
Bso31I	GGTCTC	2 cut(s)	341, 404
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	117, 168, 180, 360
Bsp1720I	GCTNAGC	1 cut(s)	143
BspANI	GGCC	6 cut(s)	113, 284, 344, 371, 377, 446
BspCNI	CTCAG	2 cut(s)	156, 418
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	440, 539
BspLI	GGNNCC	5 cut(s)	37, 101, 325, 435, 447
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	112, 188
BspTNI	GGTCTC	2 cut(s)	341, 404
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	7 cut(s)	31, 159, 189, 207, 366, 372, 438
BssMI	GATC	4 cut(s)	117, 168, 180, 360
BssNI	GRCGYC	2 cut(s)	255, 527
BssT1I	CCWWGG	2 cut(s)	207, 372
Bst2UI	CCWGG	2 cut(s)	110, 178
Bst6I	CTCTTC	1 cut(s)	509
BstACI	GRCGYC	2 cut(s)	255, 527
BstC8I	GCNNGC	3 cut(s)	52, 138, 549
BstDEI	CTNAG	3 cut(s)	143, 405, 450
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	27, 54, 493
BstFNI	CGCG	2 cut(s)	440, 539
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 337
BstKTI	GATC	4 cut(s)	120, 171, 183, 363
BstMAI	GTCTC	4 cut(s)	189, 254, 341, 404
BstMBI	GATC	4 cut(s)	117, 168, 180, 360
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 93, 341, 437, 440, 452, 464, 467
BstNI	CCWGG	2 cut(s)	110, 178
BstSCI	CCNGG	3 cut(s)	31, 108, 176
BstUI	CGCG	2 cut(s)	440, 539
BstV1I	GCAGC	3 cut(s)	102, 105, 482
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu36I	CCTNAGG	2 cut(s)	405, 450
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	6 cut(s)	113, 284, 344, 371, 377, 446
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	27, 54, 493
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	52, 138, 549
CfoI	GCGC	2 cut(s)	142, 337
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	70, 99, 445
Cfr42I	CCGCGG	1 cut(s)	441
CseI	GACGC	2 cut(s)	208, 516
CviAII	CATG	3 cut(s)	133, 154, 250
DdeI	CTNAG	3 cut(s)	143, 405, 450
DpnI	GATC	4 cut(s)	119, 170, 182, 362
DpnII	GATC	4 cut(s)	117, 168, 180, 360
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	207, 372
Eco31I	GGTCTC	2 cut(s)	341, 404
Eco47I	GGWCC	2 cut(s)	70, 99
Eco57I	CTGAAG	1 cut(s)	486
Eco81I	CCTNAGG	2 cut(s)	405, 450
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	108, 176
EcoT14I	CCWWGG	2 cut(s)	207, 372
ErhI	CCWWGG	2 cut(s)	207, 372
FaeI	CATG	3 cut(s)	136, 157, 253
FaiI	YATR	4 cut(s)	134, 155, 251, 293
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	132, 153, 249
FauI	CCCGC	2 cut(s)	59, 445
FokI	GGATG	3 cut(s)	14, 41, 480
GlaI	GCGC	2 cut(s)	141, 336
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	6 cut(s)	113, 284, 344, 371, 377, 446
HapII	CCGG	6 cut(s)	33, 68, 137, 422, 476, 497
HgaI	GACGC	2 cut(s)	208, 516
HhaI	GCGC	2 cut(s)	142, 337
Hin1I	GRCGYC	2 cut(s)	255, 527
Hin1II	CATG	3 cut(s)	136, 157, 253
Hin6I	GCGC	2 cut(s)	140, 335
HinP1I	GCGC	2 cut(s)	140, 335
HinfI	GANTC	2 cut(s)	233, 519
HpaII	CCGG	6 cut(s)	33, 68, 137, 422, 476, 497
HphI	GGTGA	2 cut(s)	390, 522
Hpy188I	TCNGA	4 cut(s)	122, 190, 238, 505
Hpy188III	TCNNGA	5 cut(s)	39, 58, 259, 407, 422
Hpy99I	CGWCG	7 cut(s)	224, 227, 230, 233, 260, 275, 323
HpyAV	CCTTC	5 cut(s)	20, 34, 296, 547, 556
HpyCH4IV	ACGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 93, 341, 437, 440, 452, 464, 467
HpyF3I	CTNAG	3 cut(s)	143, 405, 450
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	2 cut(s)	255, 527
Hsp92II	CATG	3 cut(s)	136, 157, 253
HspAI	GCGC	2 cut(s)	140, 335
Kpn2I	TCCGGA	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	4 cut(s)	117, 168, 180, 360
LmnI	GCTCC	5 cut(s)	41, 152, 329, 439, 478
Lsp1109I	GCAGC	3 cut(s)	102, 105, 482
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	4 cut(s)	119, 170, 182, 362
MboI	GATC	4 cut(s)	117, 168, 180, 360
MboII	GAAGA	5 cut(s)	121, 381, 477, 526, 553
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	421
MroNI	GCCGGC	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	6 cut(s)	33, 68, 137, 422, 476, 497
MspR9I	CCNGG	3 cut(s)	33, 110, 178
MvaI	CCWGG	2 cut(s)	110, 178
MvnI	CGCG	2 cut(s)	440, 539
MwoI	GCNNNNNNNGC	8 cut(s)	90, 93, 341, 437, 440, 452, 464, 467
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	117, 168, 180, 360
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	136, 157, 253
NlaIV	GGNNCC	5 cut(s)	37, 101, 325, 435, 447
NmeAIII	GCCGAG	2 cut(s)	370, 391
NmuCI	GTSAC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	3 cut(s)	228, 234, 363
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	519
PfoI	TCCNGGA	1 cut(s)	176
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	108, 176
PspGI	CCWGG	2 cut(s)	108, 176
PspN4I	GGNNCC	5 cut(s)	37, 101, 325, 435, 447
PspPI	GGNCC	3 cut(s)	70, 99, 445
PspPPI	RGGWCCY	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	117
SacII	CCGCGG	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	117, 168, 180, 360
Sau96I	GGNCC	3 cut(s)	70, 99, 445
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	33, 110, 178
SfaNI	GCATC	1 cut(s)	63
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SinI	GGWCC	2 cut(s)	70, 99
Sse9I	AATT	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	31, 108, 176
StyI	CCWWGG	2 cut(s)	207, 372
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	3 cut(s)	231, 258, 297
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	417
TauI	GCSGC	9 cut(s)	87, 90, 309, 434, 443, 446, 458, 461, 470
TfiI	GAWTC	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	3 cut(s)	90, 93, 470
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	3 cut(s)	16, 121, 381
TspGWI	ACGGA	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	70, 99
XapI	RAATTY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.