Rw0G009140

acetyltransferase component of pyruvate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00355
Physical Location & Seq
Reverse (-)
6 .. 1660
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009140.1

Sequence Viewer

Length: 1233 bp
ATGGCTCACCTTCTCAACACCTCCTTCATCCCCGGCTCCCGAACCCTCGCCCGCATCCCGACTACTCCAGTCCTCATCTCCGGCCGCCGCAGCAGCAGGTCCCAAGTCCAGGCCAAGATCCGAGAAATCTTCATGCCGGCGCTCAGCTCCACCATGACCGAGGGCAAGATCGTGTCCTGGGTCAAGTCCGAGGGAGACAAGCTCTCCAAGGGCGAGAGCGTCGTCGTCGTCGAGTCCGATAAGGCTGACATGGACGTCGAGACTTTCTACGACGGGTACTTGGCCTCCATTATGGTCGAGGAAGGCGGCGTTGCCCCCGTCGGCTCCGCTATTGCGCTCTTGGCCGAGACCCAAGACGAGATCGCCGAGGCCAAGGCCAAAGCCACTTCTTCTTCTCCTTCTTCATCATCACCTCCTCAGGAGACCAAAATTCCGGAAAATGCGGCTCCCGCGGCGGCCCCTAAGGCGGCGGCGGCAGCTCCGGTGGTGTCTTCTACACATCCGGCTTCAGAGGGAGGGAAGAGAATCGTGGCGTCACCTTACGCGAAGAAGCTGGCGAAGGAGTTGAAGGTTGAGTTGGGGGCAGTAGTGGGAACTGGGCCAATGGGGAGGATTGTGGCCAAGGATGTTGAGGCTTTTGCTGCAGCTCAGGCTCAGGCTCAGGCTCCGGCCGCCACATCGACGCCTGTGCCGGCCGCAGCGGCAGCATCAGGGATTGAGTTGGGGACTGTGGTGCCTTTTACTACCATGCAGGGCGCTGTGAGTAGGAACATGATTGAGAGTCTATCAGTGCCCACTTTCAGAGTAGGATACACTATCACCACTAATGCTCTGGATGCTCTCTACAAAAAGATCAAGTCCAAGGGAGTTACCATGACAGCATTGTTGGCAAAGGCAACAGCACTTGCATTGGTTCAACATCCTGTTGTCAACTCTGGCTGTAGAGATGGTAAGAGTTTTACTTATAACAGCAGCATTAACATAGCAGTTGCTGTGGCTATCGATGGTGGGTTGATAACACCAGTTCTTCAGGATGCAGACAAGGTTGACATATATACGCTGTCAAGAAAGTGGAAGGAGTTAGTTGATAAGGCCAGGGCCAAGCAGCTGCAACCTCATGAATACAATACAGCTGAGACCGCACTACATGGTCATGACTCATGTTCATTATACTTCCTATCGCTTTTTGGTTATGTGGGAATAAGTTTAGTTGTTATCAACTTACTCATTTGA

Protein Analysis

410

Amino Acids

42.82

Weight (kDa)

8.61

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 42 - 113 2.5e-15 Biotin-requiring enzyme
E3_binding PF02817 176 - 211 2.5e-13 e3 binding domain
2-oxoacid_dh PF00198 243 - 377 4e-30 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010794)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AasI GACNNNNNNGTC 1 cut(s) 254
AatII GACGTC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 733
AccII CGCG 2 cut(s) 452, 545
AccIII TCCGGA 1 cut(s) 433
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 5 cut(s) 82, 342, 618, 669, 693
AcsI RAATTY 1 cut(s) 429
AcuI CTGAAG 2 cut(s) 492, 1013
AcyI GRCGYC 3 cut(s) 255, 533, 683
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 109, 466
AgsI TTSAA 2 cut(s) 568, 917
AjnI CCWGG 3 cut(s) 108, 176, 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 7 cut(s) 147, 202, 479, 553, 647, 1108, 1133
AluI AGCT 7 cut(s) 147, 202, 479, 553, 647, 1108, 1133
Alw26I GTCTC 5 cut(s) 189, 254, 341, 416, 1130
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 992
Aor13HI TCCGGA 1 cut(s) 433
ApoI RAATTY 1 cut(s) 429
AspLEI GCGC 3 cut(s) 142, 337, 758
AspS9I GGNCC 4 cut(s) 99, 457, 599, 1098
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 402, 528, 811
AvaII GGWCC 1 cut(s) 99
AxyI CCTNAGG 2 cut(s) 417, 462
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 733
BbsI GAAGAC 1 cut(s) 483
BccI CCATC 2 cut(s) 941, 998
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BciT130I CCWGG 3 cut(s) 110, 178, 1096
BciVI GTATCC 1 cut(s) 803
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 5 cut(s) 189, 254, 341, 416, 1130
BfmI CTRYAG 2 cut(s) 642, 940
BfoI RGCGCY 2 cut(s) 143, 759
BfuAI ACCTGC 1 cut(s) 87
BfuI GTATCC 1 cut(s) 803
BglI GCCNNNNNGGC 2 cut(s) 464, 701
BlpI GCTNAGC 1 cut(s) 143
Bme1390I CCNGG 4 cut(s) 33, 110, 178, 1096
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 4 cut(s) 99, 457, 599, 1098
BmiI GGNNCC 7 cut(s) 37, 101, 325, 447, 459, 666, 735
BmrFI CCNGG 4 cut(s) 33, 110, 178, 1096
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 4 cut(s) 63, 716, 826, 1024
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 51
Bpu10I CCTNAGC 3 cut(s) 648, 654, 660
Bpu1102I GCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 1002
BsaHI GRCGYC 3 cut(s) 255, 533, 683
BsaI GGTCTC 3 cut(s) 341, 416, 1130
BsaWI WCCGGW 2 cut(s) 433, 481
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 466
Bse118I RCCGGY 2 cut(s) 136, 691
Bse1I ACTGG 3 cut(s) 68, 601, 1022
Bse21I CCTNAGG 2 cut(s) 417, 462
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 3 cut(s) 110, 178, 1096
BseCI ATCGAT 1 cut(s) 1002
BseGI GGATG 7 cut(s) 27, 54, 499, 631, 841, 919, 1039
BseLI CCNNNNNNNGG 2 cut(s) 109, 466
BseMII CTCAG 6 cut(s) 157, 431, 662, 668, 674, 1125
BseNI ACTGG 3 cut(s) 68, 601, 1022
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 795
BseX3I CGGCCG 3 cut(s) 82, 669, 693
Bsh1236I CGCG 2 cut(s) 452, 545
Bsh1285I CGRYCG 3 cut(s) 85, 672, 696
BshNI GGYRCC 1 cut(s) 733
BshVI ATCGAT 1 cut(s) 1002
BsiEI CGRYCG 3 cut(s) 85, 672, 696
BsiSI CCGG 8 cut(s) 33, 81, 137, 434, 482, 503, 668, 692
BslFI GGGAC 2 cut(s) 85, 739
BslI CCNNNNNNNGG 2 cut(s) 109, 466
BsmAI GTCTC 5 cut(s) 189, 254, 341, 416, 1130
BsmFI GGGAC 2 cut(s) 85, 739
Bso31I GGTCTC 3 cut(s) 341, 416, 1130
Bsp1286I GDGCHC 1 cut(s) 795
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 4 cut(s) 117, 168, 360, 852
Bsp1720I GCTNAGC 1 cut(s) 143
BspCNI CTCAG 6 cut(s) 156, 430, 661, 667, 673, 1126
BspDI ATCGAT 1 cut(s) 1002
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 2 cut(s) 452, 545
BspHI TCATGA 2 cut(s) 1117, 1153
BspLI GGNNCC 7 cut(s) 37, 101, 325, 447, 459, 666, 735
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 3 cut(s) 341, 416, 1130
BsrFI RCCGGY 2 cut(s) 136, 691
BsrI ACTGG 3 cut(s) 68, 601, 1022
BssAI RCCGGY 2 cut(s) 136, 691
BssMI GATC 4 cut(s) 117, 168, 360, 852
BssNI GRCGYC 3 cut(s) 255, 533, 683
BssT1I CCWWGG 4 cut(s) 207, 372, 621, 861
Bst2UI CCWGG 3 cut(s) 110, 178, 1096
Bst4CI ACNGT 1 cut(s) 730
Bst6I CTCTTC 1 cut(s) 515
BstACI GRCGYC 3 cut(s) 255, 533, 683
BstC8I GCNNGC 4 cut(s) 52, 138, 555, 693
BstDEI CTNAG 7 cut(s) 143, 417, 462, 648, 654, 660, 1134
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 7 cut(s) 27, 54, 499, 631, 841, 919, 1039
BstFNI CGCG 2 cut(s) 452, 545
BstH2I RGCGCY 2 cut(s) 143, 759
BstHHI GCGC 3 cut(s) 142, 337, 758
BstKTI GATC 4 cut(s) 120, 171, 363, 855
BstMAI GTCTC 5 cut(s) 189, 254, 341, 416, 1130
BstMBI GATC 4 cut(s) 117, 168, 360, 852
BstMCI CGRYCG 3 cut(s) 85, 672, 696
BstNI CCWGG 3 cut(s) 110, 178, 1096
BstSCI CCNGG 4 cut(s) 31, 108, 176, 1094
BstSFI CTRYAG 2 cut(s) 642, 940
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 2 cut(s) 452, 545
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BstZI CGGCCG 3 cut(s) 82, 669, 693
Bsu15I ATCGAT 1 cut(s) 1002
Bsu36I CCTNAGG 2 cut(s) 417, 462
BsuI GTATCC 1 cut(s) 803
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 7 cut(s) 27, 54, 499, 631, 841, 919, 1039
BtsIMutI CAGTG 1 cut(s) 795
BveI ACCTGC 1 cut(s) 87
Cac8I GCNNGC 4 cut(s) 52, 138, 555, 693
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 2 cut(s) 1117, 1153
CfoI GCGC 3 cut(s) 142, 337, 758
Cfr10I RCCGGY 2 cut(s) 136, 691
Cfr13I GGNCC 4 cut(s) 99, 457, 599, 1098
Cfr42I CCGCGG 1 cut(s) 453
ClaI ATCGAT 1 cut(s) 1002
CseI GACGC 3 cut(s) 208, 522, 691
Csp6I GTAC 1 cut(s) 277
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 7 cut(s) 143, 417, 462, 648, 654, 660, 1134
DpnI GATC 4 cut(s) 119, 170, 362, 854
DpnII GATC 4 cut(s) 117, 168, 360, 852
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 5 cut(s) 82, 342, 618, 669, 693
EagI CGGCCG 3 cut(s) 82, 669, 693
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EclXI CGGCCG 3 cut(s) 82, 669, 693
Eco130I CCWWGG 4 cut(s) 207, 372, 621, 861
Eco31I GGTCTC 3 cut(s) 341, 416, 1130
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 3 cut(s) 82, 669, 693
Eco57I CTGAAG 2 cut(s) 492, 1013
Eco81I CCTNAGG 2 cut(s) 417, 462
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 108, 176, 1094
EcoT14I CCWWGG 4 cut(s) 207, 372, 621, 861
ErhI CCWWGG 4 cut(s) 207, 372, 621, 861
FaqI GGGAC 2 cut(s) 85, 739
FauI CCCGC 2 cut(s) 59, 457
FokI GGATG 7 cut(s) 14, 41, 486, 638, 848, 906, 1046
GlaI GCGC 3 cut(s) 141, 336, 757
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 2 cut(s) 143, 759
HapII CCGG 8 cut(s) 33, 81, 137, 434, 482, 503, 668, 692
HgaI GACGC 3 cut(s) 208, 522, 691
HhaI GCGC 3 cut(s) 142, 337, 758
Hin1I GRCGYC 3 cut(s) 255, 533, 683
Hin6I GCGC 3 cut(s) 140, 335, 756
HinP1I GCGC 3 cut(s) 140, 335, 756
HincII GTYRAC 2 cut(s) 931, 1048
HindII GTYRAC 2 cut(s) 931, 1048
HinfI GANTC 4 cut(s) 233, 525, 781, 1157
HpaII CCGG 8 cut(s) 33, 81, 137, 434, 482, 503, 668, 692
HphI GGTGA 3 cut(s) 402, 528, 811
Hpy166II GTNNAC 2 cut(s) 931, 1048
Hpy188I TCNGA 5 cut(s) 122, 190, 238, 511, 803
Hpy8I GTNNAC 2 cut(s) 931, 1048
Hpy99I CGWCG 8 cut(s) 224, 227, 230, 233, 260, 275, 323, 685
HpyAV CCTTC 7 cut(s) 20, 34, 296, 408, 553, 562, 1069
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 5 cut(s) 644, 751, 908, 1037, 1111
HpyF3I CTNAG 7 cut(s) 143, 417, 462, 648, 654, 660, 1134
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 3 cut(s) 255, 533, 683
HspAI GCGC 3 cut(s) 140, 335, 756
Kpn2I TCCGGA 1 cut(s) 433
KroI GCCGGC 2 cut(s) 136, 691
KroNI GCCGGC 2 cut(s) 138, 693
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 4 cut(s) 117, 168, 360, 852
LmnI GCTCC 6 cut(s) 41, 152, 329, 451, 484, 670
LweI GCATC 4 cut(s) 63, 716, 826, 1024
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 534, 868
MalI GATC 4 cut(s) 119, 170, 362, 854
MboI GATC 4 cut(s) 117, 168, 360, 852
MboII GAAGA 8 cut(s) 121, 381, 384, 393, 483, 532, 559, 1019
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 795
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 3 cut(s) 242, 790, 1151
Mox20I TGGCCA 1 cut(s) 620
MroI TCCGGA 1 cut(s) 433
MroNI GCCGGC 2 cut(s) 136, 691
MscI TGGCCA 1 cut(s) 620
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 1 cut(s) 1152
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 4 cut(s) 452, 701, 1108, 1133
MspI CCGG 8 cut(s) 33, 81, 137, 434, 482, 503, 668, 692
MspR9I CCNGG 4 cut(s) 33, 110, 178, 1096
MvaI CCWGG 3 cut(s) 110, 178, 1096
MvnI CGCG 2 cut(s) 452, 545
NaeI GCCGGC 2 cut(s) 138, 693
NciI CCSGG 1 cut(s) 33
NdeII GATC 4 cut(s) 117, 168, 360, 852
NgoMIV GCCGGC 2 cut(s) 136, 691
NlaIV GGNNCC 7 cut(s) 37, 101, 325, 447, 459, 666, 735
NmeAIII GCCGAG 2 cut(s) 370, 391
NmuCI GTSAC 1 cut(s) 534
PagI TCATGA 2 cut(s) 1117, 1153
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 234, 363
PdiI GCCGGC 2 cut(s) 138, 693
PfeI GAWTC 1 cut(s) 525
PleI GAGTC 3 cut(s) 241, 789, 1151
PpsI GAGTC 3 cut(s) 241, 789, 1151
PpuMI RGGWCCY 1 cut(s) 99
PsiI TTATAA 1 cut(s) 966
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 3 cut(s) 108, 176, 1094
PspGI CCWGG 3 cut(s) 108, 176, 1094
PspN4I GGNNCC 7 cut(s) 37, 101, 325, 447, 459, 666, 735
PspPI GGNCC 4 cut(s) 99, 457, 599, 1098
PspPPI RGGWCCY 1 cut(s) 99
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 117
PvuII CAGCTG 2 cut(s) 1108, 1133
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 1152
SacII CCGCGG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 978
Sau3AI GATC 4 cut(s) 117, 168, 360, 852
Sau96I GGNCC 4 cut(s) 99, 457, 599, 1098
SchI GAGTC 3 cut(s) 242, 790, 1151
ScrFI CCNGG 4 cut(s) 33, 110, 178, 1096
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 4 cut(s) 63, 716, 826, 1024
SfcI CTRYAG 2 cut(s) 642, 940
Sfr303I CCGCGG 1 cut(s) 453
SgrBI CCGCGG 1 cut(s) 453
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 1152
Sse9I AATT 1 cut(s) 429
StyD4I CCNGG 4 cut(s) 31, 108, 176, 1094
StyI CCWWGG 4 cut(s) 207, 372, 621, 861
TaaI ACNGT 1 cut(s) 730
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 231, 258, 297, 680, 1002
TaqII GACCGA 1 cut(s) 173
TasI AATT 1 cut(s) 429
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 1 cut(s) 534
Tsp45I GTSAC 1 cut(s) 534
TspDTI ATGAA 5 cut(s) 16, 121, 393, 1134, 1155
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.