Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032599.1

Orthogroup ID

OG0010794

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 752

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 340 bp

tgagagtctatcagtgcccactttcagagtaggatacactatcaccactaatgctctggatgctctctacaaaaagatcaagtccaagggagttaccatgacagcattgttggcaaaggcaacagcacttgcattggttcaacatcctgttgtcaactctggctgtagagatggtaagagttttacttataacagcagcattaacatagcagttgctgtggctatcgatggtgggttgataacaccagttcttcaggatgcagacaaggttgacatatatacgttgtcaagaaagtggaaggagttagttgataaggccagggccaagcagctgcaacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0019904 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

113

Amino Acids

12.19

Weight (kDa)

9.59

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34430
fragaria_vesca	FvH4_2g12130
malus_domestica	MD05G1040900.v1.1 MD10G1046900.v1.1
prunus_persica	Prupe.8G056000_v2.0.a1
pyrus_communis	pycom05g03360 pycom10g03320
rosa_chinensis	RchiOBHm_Chr6g0272101 RchiOBHm_Chr6g0272111
rosa_laevigata	RLG00000013702
rosa_multiflora	Rmu_sc0013301.1_g000004 Rmu_sc0032599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196600
rosa_rugosa	Rorug06G0065600
rosa_samantha	Rh6AG182900 Rh6BG184200 Rh6CG184100 Rh6DG175700
rosa_wichuraiana	Rw0G009140 Rw6G015740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	316, 322
ApeKI	GCWGC	3 cut(s)	196, 329, 332
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	208, 319
BccI	CCATC	2 cut(s)	165, 222
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	3 cut(s)	197, 330, 333
BlsI	GCNGC	3 cut(s)	198, 331, 334
Bme1390I	CCNGG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	50, 248
Bsa29I	ATCGAT	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	85, 319
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	85, 319
BseGI	GGATG	3 cut(s)	65, 143, 263
BseNI	ACTGG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	208, 319
BshFI	GGCC	2 cut(s)	318, 324
BshVI	ATCGAT	1 cut(s)	226
BsnI	GGCC	2 cut(s)	318, 324
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	318, 324
BspDI	ATCGAT	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	85, 319
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	320
BstF5I	GGATG	3 cut(s)	65, 143, 263
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 111
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	208, 319
Bsu15I	ATCGAT	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	318, 324
BsuTUI	ATCGAT	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	65, 143, 263
BtsIMutI	CAGTG	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	226
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	5 cut(s)	163, 222, 318, 324, 332
CviKI_1	RGCY	5 cut(s)	163, 222, 318, 324, 332
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	99, 190, 207, 276, 278, 280
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	197, 330, 333
FokI	GGATG	3 cut(s)	72, 130, 270
Fsp4HI	GCNGC	3 cut(s)	197, 330, 333
GluI	GCNGC	3 cut(s)	197, 330, 333
HaeIII	GGCC	2 cut(s)	318, 324
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	2 cut(s)	155, 272
HindII	GTYRAC	2 cut(s)	155, 272
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	155, 272
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	57, 255, 289
Hpy8I	GTNNAC	2 cut(s)	155, 272
HpyAV	CCTTC	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	132, 261, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 111
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	42, 145, 160, 240, 259, 305, 332
Lsp1109I	GCAGC	2 cut(s)	208, 319
LweI	GCATC	2 cut(s)	50, 248
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	60, 111
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	198, 331, 334
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	202
SatI	GCNGC	3 cut(s)	197, 330, 333
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	3 cut(s)	271, 285, 334
SfaNI	GCATC	2 cut(s)	50, 248
SfcI	CTRYAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	85
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	202
Tru9I	TTAA	1 cut(s)	202
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	3 cut(s)	196, 329, 332
TspRI	CASTG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.