RchiOBHm_Chr6g0272101

acetyltransferase component of pyruvate dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010794
Physical Location & Seq
Reverse (-)
32168022 .. 32175053
7032 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24409

Sequence Viewer

Length: 795 bp
ATGGGGAGGATTGTGGCCAAGGATGTTGAGGCTTTTGCTGCAGCTCAGGCTCAGGCTCAGGCTCAGGCTCCGGCCGCCACATCGACGCCAGTGCCGGCCGCAGCGGCAGCGGCAGGGATTGAGTTGGGGACTGTGGTGCCTTTTACTACCATGCAGGGCGCTGTGAGTAGGAACATGATTGAGAGTCTATCAGTGCCCACTTTCAGAGTGGGATACACTATCACCACTAATGCTCTGGATGCTCTCTACAAAAAGATCAAGTCCAAGGGAGTTACCATGACAGCATTGTTGGCAAAGGCAACAGCACTTGCATTGGTTCAACATCCTGTTGTCAACTCTGGCTGTAGAGATGGTAAGAGTTTTACTTATAACAGCAGCATTAACATAGCAGTTGCTGTGGCTATCGATGGTGGGTTGATAACACCAGTTCTTCAGGATGCAGACAAGGTTGACATATATACGTTGTCAAGAAAGTGGAAGGAGTTAGTTGACAAGGCCAGGGCCAAGCAGCTGCAACCTCATGAATACAATACAGGTACTTTCACTCTTTCAAATCTTGGGATGTTTGGCGTTGACCGGTTTGATGCCATTCTGCCACCTGGAACTGGAGCAATTATGGCAGTTGGAGCATCTCAGCCTACTGTTGTGGCTTCCAAGGATGGTCGAATTGGTATGAAGAACCAAATGCAGGTTAATGTTACAGCTGATCATCGTGTAATTTATGGTGCTGATCTTGCTTCGTTCTTGCAAACCTTGGCAAGAATTATTGAGGACCCCAAAGATCTTACCTTCTAG

Protein Analysis

264

Amino Acids

27.84

Weight (kDa)

9.12

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-oxoacid_dh PF00198 44 - 262 9.7e-64 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010794)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34430
fragaria_vesca FvH4_2g12130
malus_domestica MD05G1040900.v1.1 MD10G1046900.v1.1
prunus_persica Prupe.8G056000_v2.0.a1
pyrus_communis pycom05g03360 pycom10g03320
rosa_chinensis RchiOBHm_Chr6g0272101 RchiOBHm_Chr6g0272111
rosa_laevigata RLG00000013702
rosa_multiflora Rmu_sc0013301.1_g000004 Rmu_sc0032599.1_g000001
rosa_roxburghii Rroxscaffold_7G00196600
rosa_rugosa Rorug06G0065600
rosa_samantha Rh6AG182900 Rh6BG184200 Rh6CG184100 Rh6DG175700
rosa_wichuraiana Rw0G009140 Rw6G015740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 4 cut(s) 75, 99, 104, 110
AcoI YGGCCR 3 cut(s) 15, 72, 96
AcuI CTGAAG 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 2 cut(s) 605, 688
AgeI ACCGGT 1 cut(s) 576
AgsI TTSAA 2 cut(s) 320, 552
AjnI CCWGG 2 cut(s) 497, 598
AluBI AGCT 3 cut(s) 44, 511, 704
AluI AGCT 3 cut(s) 44, 511, 704
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 5 cut(s) 15, 72, 96, 495, 501
ApeKI GCWGC 7 cut(s) 38, 41, 101, 107, 375, 508, 511
AsiGI ACCGGT 1 cut(s) 576
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 501, 772
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 136
BbvI GCAGC 7 cut(s) 25, 53, 113, 119, 387, 498, 520
BccI CCATC 3 cut(s) 344, 401, 653
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 2 cut(s) 499, 600
BciVI GTATCC 1 cut(s) 206
BclI TGATCA 1 cut(s) 706
BfaI CTAG 1 cut(s) 793
BfmI CTRYAG 2 cut(s) 39, 343
BfoI RGCGCY 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 679
BfuI GTATCC 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 104
BglII AGATCT 1 cut(s) 781
Bme1390I CCNGG 2 cut(s) 499, 600
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 501, 772
BmiI GGNNCC 3 cut(s) 69, 138, 774
BmrFI CCNGG 2 cut(s) 499, 600
BmsI GCATC 4 cut(s) 229, 427, 574, 638
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 4 cut(s) 45, 51, 57, 63
Bsa29I ATCGAT 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 5 cut(s) 18, 264, 498, 654, 753
BsaWI WCCGGW 1 cut(s) 576
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 688
Bse118I RCCGGY 2 cut(s) 94, 576
Bse1I ACTGG 3 cut(s) 89, 425, 610
BseBI CCWGG 2 cut(s) 499, 600
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 5 cut(s) 18, 264, 498, 654, 753
BseGI GGATG 6 cut(s) 28, 244, 322, 442, 567, 664
BseLI CCNNNNNNNGG 2 cut(s) 605, 688
BseMII CTCAG 5 cut(s) 59, 65, 71, 77, 647
BseNI ACTGG 3 cut(s) 89, 425, 610
BseSI GKGCMC 1 cut(s) 198
BseX3I CGGCCG 2 cut(s) 72, 96
BseXI GCAGC 7 cut(s) 25, 53, 113, 119, 387, 498, 520
Bsh1285I CGRYCG 2 cut(s) 75, 99
BshFI GGCC 5 cut(s) 17, 74, 98, 497, 503
BshNI GGYRCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 576
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 2 cut(s) 75, 99
BsiSI CCGG 3 cut(s) 71, 95, 577
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 605, 688
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 5 cut(s) 17, 74, 98, 497, 503
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 4 cut(s) 255, 706, 730, 781
BspACI CCGC 4 cut(s) 75, 99, 104, 110
BspANI GGCC 5 cut(s) 17, 74, 98, 497, 503
BspCNI CTCAG 5 cut(s) 58, 64, 70, 76, 646
BspDI ATCGAT 1 cut(s) 405
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 69, 138, 774
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 2 cut(s) 94, 576
BsrI ACTGG 3 cut(s) 89, 425, 610
BssAI RCCGGY 2 cut(s) 94, 576
BssECI CCNNGG 5 cut(s) 18, 264, 498, 654, 753
BssMI GATC 4 cut(s) 255, 706, 730, 781
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 4 cut(s) 18, 264, 654, 753
Bst2UI CCWGG 2 cut(s) 499, 600
Bst4CI ACNGT 2 cut(s) 133, 643
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 5 cut(s) 45, 51, 57, 63, 633
BstF5I GGATG 6 cut(s) 28, 244, 322, 442, 567, 664
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 4 cut(s) 258, 709, 733, 784
BstMBI GATC 4 cut(s) 255, 706, 730, 781
BstMCI CGRYCG 2 cut(s) 75, 99
BstNI CCWGG 2 cut(s) 499, 600
BstSCI CCNGG 2 cut(s) 497, 598
BstSFI CTRYAG 2 cut(s) 39, 343
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 7 cut(s) 25, 53, 113, 119, 387, 498, 520
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BstZI CGGCCG 2 cut(s) 72, 96
Bsu15I ATCGAT 1 cut(s) 405
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 5 cut(s) 17, 74, 98, 497, 503
BsuTUI ATCGAT 1 cut(s) 405
BtsCI GGATG 6 cut(s) 28, 244, 322, 442, 567, 664
BtsIMutI CAGTG 2 cut(s) 96, 198
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 2 cut(s) 94, 576
Cfr13I GGNCC 2 cut(s) 501, 772
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 537
CspAI ACCGGT 1 cut(s) 576
CviAII CATG 4 cut(s) 151, 175, 277, 521
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 5 cut(s) 45, 51, 57, 63, 633
DpnI GATC 4 cut(s) 257, 708, 732, 783
DpnII GATC 4 cut(s) 255, 706, 730, 781
EaeI YGGCCR 3 cut(s) 15, 72, 96
EagI CGGCCG 2 cut(s) 72, 96
EclXI CGGCCG 2 cut(s) 72, 96
Eco130I CCWWGG 4 cut(s) 18, 264, 654, 753
Eco47I GGWCC 1 cut(s) 772
Eco52I CGGCCG 2 cut(s) 72, 96
Eco57I CTGAAG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 2 cut(s) 497, 598
EcoT14I CCWWGG 4 cut(s) 18, 264, 654, 753
ErhI CCWWGG 4 cut(s) 18, 264, 654, 753
FaeI CATG 4 cut(s) 154, 178, 280, 524
FaqI GGGAC 1 cut(s) 142
FatI CATG 4 cut(s) 150, 174, 276, 520
FbaI TGATCA 1 cut(s) 706
FokI GGATG 6 cut(s) 35, 251, 309, 449, 574, 671
FspBI CTAG 1 cut(s) 793
GlaI GCGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 5 cut(s) 17, 74, 98, 497, 503
HapII CCGG 3 cut(s) 71, 95, 577
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 154, 178, 280, 524
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 4 cut(s) 334, 451, 490, 574
HindII GTYRAC 4 cut(s) 334, 451, 490, 574
HinfI GANTC 1 cut(s) 184
HpaII CCGG 3 cut(s) 71, 95, 577
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 4 cut(s) 334, 451, 490, 574
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 4 cut(s) 236, 434, 468, 521
Hpy8I GTNNAC 4 cut(s) 334, 451, 490, 574
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 133, 643
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 7 cut(s) 41, 154, 311, 440, 514, 688, 748
HpyF3I CTNAG 5 cut(s) 45, 51, 57, 63, 633
HpySE526I ACGT 1 cut(s) 461
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 154, 178, 280, 524
HspAI GCGC 1 cut(s) 159
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 255, 706, 730, 781
LmnI GCTCC 3 cut(s) 73, 608, 626
Lsp1109I GCAGC 7 cut(s) 25, 53, 113, 119, 387, 498, 520
LweI GCATC 4 cut(s) 229, 427, 574, 638
MaeI CTAG 1 cut(s) 793
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 271, 697
MalI GATC 4 cut(s) 257, 708, 732, 783
MboI GATC 4 cut(s) 255, 706, 730, 781
MboII GAAGA 2 cut(s) 422, 688
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 4 cut(s) 612, 666, 717, 762
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 3 cut(s) 22, 528, 763
Mox20I TGGCCA 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 94
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 381, 693
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 4 cut(s) 104, 110, 511, 704
MspI CCGG 3 cut(s) 71, 95, 577
MspR9I CCNGG 2 cut(s) 499, 600
MvaI CCWGG 2 cut(s) 499, 600
NaeI GCCGGC 1 cut(s) 96
NdeII GATC 4 cut(s) 255, 706, 730, 781
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 4 cut(s) 154, 178, 280, 524
NlaIV GGNNCC 3 cut(s) 69, 138, 774
PagI TCATGA 1 cut(s) 520
PdiI GCCGGC 1 cut(s) 96
PinAI ACCGGT 1 cut(s) 576
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 772
PsiI TTATAA 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 2 cut(s) 497, 598
PspGI CCWGG 2 cut(s) 497, 598
PspN4I GGNNCC 3 cut(s) 69, 138, 774
PspPI GGNCC 2 cut(s) 501, 772
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 781
PvuII CAGCTG 2 cut(s) 511, 704
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 381, 693
Sau3AI GATC 4 cut(s) 255, 706, 730, 781
Sau96I GGNCC 2 cut(s) 501, 772
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 499, 600
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 4 cut(s) 229, 427, 574, 638
SfcI CTRYAG 2 cut(s) 39, 343
SinI GGWCC 1 cut(s) 772
Sse9I AATT 4 cut(s) 612, 666, 717, 762
SsiI CCGC 4 cut(s) 75, 99, 104, 110
SspMI CTAG 1 cut(s) 793
StyD4I CCNGG 2 cut(s) 497, 598
StyI CCWWGG 4 cut(s) 18, 264, 654, 753
TaaI ACNGT 2 cut(s) 133, 643
TaiI ACGT 1 cut(s) 464
TaqI TCGA 3 cut(s) 83, 405, 664
TasI AATT 4 cut(s) 612, 666, 717, 762
TauI GCSGC 4 cut(s) 77, 101, 107, 113
Tru1I TTAA 2 cut(s) 381, 693
Tru9I TTAA 2 cut(s) 381, 693
TscAI CASTG 2 cut(s) 96, 198
TseI GCWGC 7 cut(s) 38, 41, 101, 107, 375, 508, 511
TspDTI ATGAA 2 cut(s) 537, 689
TspRI CASTG 2 cut(s) 96, 198
VpaK11BI GGWCC 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 2 cut(s) 205, 232
XspI CTAG 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.