Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

4075429 .. 4078602

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATCAGGGTCATGGCAACAACATTCTGTAATCTTCCCACGGGGTCTGGTCTCACAAAACTGAAAGACTACCGTGTCTCCAAAAGACCTTATCGAGGCTTTGCAACATTGTCTTGTTTCTCCTATAATGCTCAAAAAGTTTTCCTTAGAAGAGAGGTAGAGGCCAGGCGGCAGTGGCAACATTGTGGACAGGCTTTTGTCAACAATAAGTCAGACTATTATTCTAACACCACCATCCACCAAGAAGAGGATAAGGAAGAAGCGGATATTTCTAAAGCAACCTTGACATGGAGGGCGATCAAGTTACCAATATACTCCGTTGCTTTGATTCCTCTCACGGTAGGTAGCGCAGCTGCTTATTTGCAGACAGGCATGTTCTCAGCTCAGCGTTATTCTATTCTTTTGATTTCCTCGGTTCTTATCATCACATGGCTCAACTTAAGCAACGATGTATACGATTTCGATACAGGAGCAGACATAAATAAGAAAGAATCAGTTGTAAATCTGGTGGGCAGCCGTACAGGCACTCTTGTTTCTGCATACTTGCTACTTGCTCTTGGCTTCTGGGGGCTTGCTTGGGTATCTGTTAAGGCAGGAAGTATGCGTGCAATATTATTACTCGGTTGTGCAGTCATTTGTGGTTATATATATCAGTGTCCACCATTTCGGTTAAGTTACAAGGGATTGGGAGAGCCGTTGTGTTTTGCAGCATTTGGTCCATTCGCTACCACCGGGTTTTATTTATTGCAGGGCAGCACAAGGGATGTGATCCATCTTCCTTTCACTGGTTCAATTCTCTCCGTATCACTCCTTGTTGGCATAACAACGGCCTTGATCCTCTTCTGTAGTCACTTTCATCAGATCGAAGGAGACCGGGCTGTAGGAAAAATATCCCCTCTGGTTAGGCTTGGCACCGAAAGAGGATCAGGGGTAGTGAAATGGGTAGTAACAGGACTATATGTTCTTACTTTCACTTTCGGTTTGAGCAGCGCTCTTCCTTTTACTTGTCTCTTTCTCTGTTGCTTGACCTTACCAATTGCAAGACTGGTGGTTAGCTATGTTGAAGAAAACCACAATGACAAGCAGAAGATATTCATGGCGAAGTACTACTGTGTGAGATTGCATTCTTTGTTTGGAACTGCATTGGCTGCTGGACTCGTTGTGTCGAGAATGTTCCCTAAACTTAGCCTTTCCTCAGCGTTTGGATTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

405

Amino Acids

44.54

Weight (kDa)

9.3

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	109 - 367	4.6e-26	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	911
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	2 cut(s)	169, 263
AclWI	GGATC	3 cut(s)	763, 829, 931
AfaI	GTAC	2 cut(s)	520, 1106
AfeI	AGCGCT	1 cut(s)	991
AfiI	CCNNNNNNNGG	4 cut(s)	95, 247, 288, 785
AflII	CTTAAG	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	792, 1064
AjnI	CCWGG	1 cut(s)	164
AloI	GAACNNNNNNTCC	2 cut(s)	945, 977
AluBI	AGCT	3 cut(s)	353, 383, 1056
AluI	AGCT	3 cut(s)	353, 383, 1056
Alw26I	GTCTC	4 cut(s)	56, 82, 864, 1013
AlwI	GGATC	3 cut(s)	763, 829, 931
Aor51HI	AGCGCT	1 cut(s)	991
AoxI	GGCC	2 cut(s)	162, 828
ApeKI	GCWGC	7 cut(s)	350, 353, 513, 707, 753, 987, 1148
Asp700I	GAANNNNTTC	1 cut(s)	1091
AspLEI	GCGC	2 cut(s)	350, 992
AspS9I	GGNCC	1 cut(s)	716
AsuC2I	CCSGG	2 cut(s)	733, 875
AvaII	GGWCC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	911
BbvCI	CCTCAGC	1 cut(s)	1195
BbvI	GCAGC	7 cut(s)	340, 362, 525, 719, 765, 999, 1135
BccI	CCATC	2 cut(s)	242, 780
BceAI	ACGGC	3 cut(s)	501, 679, 843
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	733, 875
BcoDI	GTCTC	4 cut(s)	56, 82, 864, 1013
BfmI	CTRYAG	2 cut(s)	844, 879
BfoI	RGCGCY	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	522
BisI	GCNGC	8 cut(s)	170, 351, 354, 514, 708, 754, 988, 1149
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	8 cut(s)	171, 352, 355, 515, 709, 755, 989, 1150
BmcAI	AGTACT	1 cut(s)	1106
Bme1390I	CCNGG	3 cut(s)	166, 733, 875
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	913
BmrFI	CCNGG	3 cut(s)	166, 733, 875
BplI	GAGNNNNNCTC	2 cut(s)	976, 1008
Bpu10I	CCTNAGC	1 cut(s)	1195
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	733, 875
BsaI	GGTCTC	2 cut(s)	56, 864
BsaJI	CCNNGG	2 cut(s)	39, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 247, 288, 785
Bse1I	ACTGG	2 cut(s)	790, 1050
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	39, 411
BseGI	GGATG	2 cut(s)	234, 769
BseLI	CCNNNNNNNGG	4 cut(s)	95, 247, 288, 785
BseMII	CTCAG	3 cut(s)	393, 398, 1209
BseNI	ACTGG	2 cut(s)	790, 1050
BseXI	GCAGC	7 cut(s)	340, 362, 525, 719, 765, 999, 1135
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	164, 830
BshNI	GGYRCC	1 cut(s)	911
BsiSI	CCGG	2 cut(s)	732, 874
BslI	CCNNNNNNNGG	4 cut(s)	95, 247, 288, 785
BsmAI	GTCTC	4 cut(s)	56, 82, 864, 1013
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	2 cut(s)	164, 830
Bso31I	GGTCTC	2 cut(s)	56, 864
Bsp143I	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	2 cut(s)	169, 263
BspANI	GGCC	2 cut(s)	164, 830
BspCNI	CTCAG	3 cut(s)	392, 397, 1208
BspHI	TCATGA	1 cut(s)	1211
BspLI	GGNNCC	1 cut(s)	913
BspPI	GGATC	3 cut(s)	763, 829, 931
BspQI	GCTCTTC	1 cut(s)	999
BspT107I	GGYRCC	1 cut(s)	911
BspTI	CTTAAG	1 cut(s)	439
BspTNI	GGTCTC	2 cut(s)	56, 864
BsrI	ACTGG	2 cut(s)	790, 1050
BssECI	CCNNGG	2 cut(s)	39, 411
BssMI	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
BssNAI	GTATAC	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	74, 340, 1112
Bst6I	CTCTTC	4 cut(s)	145, 240, 845, 999
BstAFI	CTTAAG	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	1148
BstC8I	GCNNGC	2 cut(s)	573, 606
BstDEI	CTNAG	5 cut(s)	146, 379, 384, 1184, 1195
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	234, 769
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	2 cut(s)	350, 992
BstKTI	GATC	6 cut(s)	6, 300, 771, 837, 864, 926
BstMAI	GTCTC	4 cut(s)	56, 82, 864, 1013
BstMBI	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 522, 1148
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	3 cut(s)	164, 731, 873
BstSFI	CTRYAG	2 cut(s)	844, 879
BstV1I	GCAGC	7 cut(s)	340, 362, 525, 719, 765, 999, 1135
BstZ17I	GTATAC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	164, 830
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	234, 769
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	3 cut(s)	179, 659, 783
Cac8I	GCNNGC	2 cut(s)	573, 606
CciI	TCATGA	1 cut(s)	1211
CfoI	GCGC	2 cut(s)	350, 992
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	519, 1105
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	6 cut(s)	13, 288, 373, 429, 1096, 1212
CviQI	GTAC	2 cut(s)	519, 1105
DdeI	CTNAG	5 cut(s)	146, 379, 384, 1184, 1195
DpnI	GATC	6 cut(s)	5, 299, 770, 836, 863, 925
DpnII	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	4 cut(s)	145, 240, 845, 999
EarI	CTCTTC	4 cut(s)	145, 240, 845, 999
Eco31I	GGTCTC	2 cut(s)	56, 864
Eco47I	GGWCC	1 cut(s)	716
Eco47III	AGCGCT	1 cut(s)	991
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	6 cut(s)	16, 291, 376, 432, 1099, 1215
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	6 cut(s)	12, 287, 372, 428, 1095, 1211
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	8 cut(s)	170, 351, 354, 514, 708, 754, 988, 1149
FokI	GGATG	2 cut(s)	221, 776
Fsp4HI	GCNGC	8 cut(s)	170, 351, 354, 514, 708, 754, 988, 1149
GlaI	GCGC	2 cut(s)	349, 991
GluI	GCNGC	8 cut(s)	170, 351, 354, 514, 708, 754, 988, 1149
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	2 cut(s)	164, 830
HapII	CCGG	2 cut(s)	732, 874
HhaI	GCGC	2 cut(s)	350, 992
Hin1II	CATG	6 cut(s)	16, 291, 376, 432, 1099, 1215
Hin6I	GCGC	2 cut(s)	348, 990
HinP1I	GCGC	2 cut(s)	348, 990
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	328, 491, 1155
HpaII	CCGG	2 cut(s)	732, 874
Hpy166II	GTNNAC	4 cut(s)	188, 202, 454, 659
Hpy188I	TCNGA	2 cut(s)	214, 861
Hpy188III	TCNNGA	2 cut(s)	1167, 1212
Hpy8I	GTNNAC	4 cut(s)	188, 202, 454, 659
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	3 cut(s)	74, 340, 1112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 522, 1148
HpyF3I	CTNAG	5 cut(s)	146, 379, 384, 1184, 1195
Hsp92II	CATG	6 cut(s)	16, 291, 376, 432, 1099, 1215
HspAI	GCGC	2 cut(s)	348, 990
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
LguI	GCTCTTC	1 cut(s)	999
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	7 cut(s)	340, 362, 525, 719, 765, 999, 1135
MaeIII	GTNAC	4 cut(s)	303, 674, 848, 946
MalI	GATC	6 cut(s)	5, 299, 770, 836, 863, 925
MboI	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
MboII	GAAGA	9 cut(s)	26, 162, 257, 269, 767, 832, 986, 1076, 1099
MfeI	CAATTG	1 cut(s)	1035
MluCI	AATT	2 cut(s)	792, 1035
MlyI	GAGTC	1 cut(s)	1149
MroXI	GAANNNNTTC	1 cut(s)	1091
MseI	TTAA	3 cut(s)	440, 588, 671
MspA1I	CMGCKG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	2 cut(s)	732, 874
MspR9I	CCNGG	3 cut(s)	166, 733, 875
MunI	CAATTG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	175, 522, 1148
NciI	CCSGG	2 cut(s)	733, 875
NdeII	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
NlaIII	CATG	6 cut(s)	16, 291, 376, 432, 1099, 1215
NlaIV	GGNNCC	1 cut(s)	913
NmuCI	GTSAC	1 cut(s)	848
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	1211
PciSI	GCTCTTC	1 cut(s)	999
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PctI	GAATGC	1 cut(s)	1123
PdmI	GAANNNNTTC	1 cut(s)	1091
PfeI	GAWTC	2 cut(s)	328, 491
PkrI	GCNGC	8 cut(s)	171, 352, 355, 515, 709, 755, 989, 1150
PleI	GAGTC	1 cut(s)	1149
PpsI	GAGTC	1 cut(s)	1149
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	913
PspPI	GGNCC	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	520, 1106
RsaNI	GTAC	2 cut(s)	519, 1105
SapI	GCTCTTC	1 cut(s)	999
SaqAI	TTAA	3 cut(s)	440, 588, 671
SatI	GCNGC	8 cut(s)	170, 351, 354, 514, 708, 754, 988, 1149
Sau3AI	GATC	6 cut(s)	3, 297, 768, 834, 861, 923
Sau96I	GGNCC	1 cut(s)	716
ScaI	AGTACT	1 cut(s)	1106
SchI	GAGTC	1 cut(s)	1149
ScrFI	CCNGG	3 cut(s)	166, 733, 875
SetI	ASST	8 cut(s)	91, 159, 284, 346, 355, 385, 1031, 1058
SfcI	CTRYAG	2 cut(s)	844, 879
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	2 cut(s)	792, 1035
SsiI	CCGC	2 cut(s)	169, 263
SspI	AATATT	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	164, 731, 873
TaaI	ACNGT	3 cut(s)	74, 340, 1112
TaqI	TCGA	4 cut(s)	94, 462, 864, 1166
TasI	AATT	2 cut(s)	792, 1035
TatI	WGTACW	1 cut(s)	1104
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	328, 491
Tru1I	TTAA	3 cut(s)	440, 588, 671
Tru9I	TTAA	3 cut(s)	440, 588, 671
TscAI	CASTG	3 cut(s)	179, 659, 790
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	7 cut(s)	350, 353, 513, 707, 753, 987, 1148
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	2 cut(s)	845, 1084
TspGWI	ACGGA	2 cut(s)	307, 790
TspRI	CASTG	3 cut(s)	179, 659, 790
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	1091
ZrmI	AGTACT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.