Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004166

Physical Location & Seq

Genomic Coordinates Forward (+)

4431738 .. 4436298

Gene Structure 4561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATATACCATGTCACCGTGCTGTTGTGGCACGTTGTATTATCTACAGTTTTGGCGGCCACAGCGGCCCCTCTCGCCCCTCTTTTTCATGCACAAAAACAAGACGCGCGCACGCACCAACGCAACACATATCCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCTGTATCAATGGCTTCCGTATCTGCTCCCACCCCAAGTCCTCACAAGCTCAACTTCCCCAACCCCAAACCATACCCCTCCTCCGTCGCCAAAAGAGCATTCTACCCTTCCTCCCATTCCCAAACCACCTTCTCCTCGAGGTTTCCCGATTCGTCCCTCTGCCGATGCCAGAAGACCCCTTCTTCCTCCTCCGACTCAACTCAATGGAGATGGAACTCTGCGCTCCAGAACCTCATCAAAAACGCCGTCAAAGGCCTCGATTCTTGCGTCAATTTTAGACCACAACCAGACGCCCAATCCGCATCGTTTCAGACCGACGACCCTGATTGGGACTGGGATCGCTGGCGCCGCCATTTCTTAGAGGTCGAACAACAAGAGCGCCTTGTCTCCCTTCTCAAGTTGCAGTTGGGTCGGGCTGTATATGCAGAGGACTTTGAGGATGCTGCGAGGCTCAAAGTTGCAATTGCCGCTGCAGCTGCAAACGACGTCGTTGGAAGAGTCATTTCTCATCTCAATAGAGCTATACAGGAAGAACGATACCAGGACGCCGCATTTTTCCGAGATAATGCCGGTGCCGGATTGGTGGGTTGGTGGGCTGGTCTTTCTGAAGATAAGAAGGATCCCCGTGGCATAATTATTCGAGTAACTGCGGAGCATGGAAGATATGTCGCAAGGAGTTACAGTCCCTGGGAGCTTGCTACTGCTGCAGCTGGTGTCCCACTCTTTGAGATTTATTTAACAGCAAATAAGAATGGTGAATACAGACAGCAGGCTGTGTATTTAAAGCAGGGAGGGGTGTTTCAGGATTCTTCACAAGTTAGCTCCAAATCATTGGATGCCAGTGGCAGCTTGAATCCCTTTGATTCAACTGAAGAAAAAGGTGATCTATTTGTTGCAGATAGTGAAGATGCAGATGATGGCTCTGATCTTTCTGAGGACATCTCTGGTTTTCAAAGTTTCTTGAGAGATATGATTCCTAATGTGAAGGTCAAGGTTTTGAAAGTGACCTCACCAGGGAAGGTAGACAGGGATCTATTATCGAAAGTGATTGAACAGATTATTGAGGAAGATGATGAAGATAAGGATAGTGAAATAGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0008219 GO:0009579 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010343 GO:0012501 GO:0016020 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034357 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0042221 GO:0042493 GO:0042651 GO:0044424 GO:0044436 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071452 GO:0071496 GO:0097468 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3506 UVR

Protein Analysis

424

Amino Acids

46.79

Weight (kDa)

5.67

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33630 AT4G33630 AT4G33630
fragaria_vesca	FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660
malus_domestica	MD05G1048100.v1.1 MD10G1054700.v1.1
prunus_persica	Prupe.8G070300_v2.0.a1 Prupe.8G070300_v2.0.a1
pyrus_communis	pycom10g04160 pycom10g04170
rosa_chinensis	RchiOBHm_Chr6g0270901 RchiOBHm_Chr6g0270911
rosa_laevigata	RLG00000013760
rosa_multiflora	Rmu_co8045566.1_g000001 Rmu_sc0007274.1_g000002 Rmu_ssc0000474.1_g000011
rosa_roxburghii	Rroxscaffold_7G00197500
rosa_rugosa	Rorug06G0057200
rosa_samantha	Rh6AG176700 Rh6BG180100 Rh6CG176200 Rh6DG168400
rosa_wichuraiana	Rw6G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	657
AbsI	CCTCGAGG	1 cut(s)	304
AccB1I	GGYRCC	2 cut(s)	513, 740
AccI	GTMKAC	1 cut(s)	1191
AccII	CGCG	2 cut(s)	108, 110
AciI	CCGC	7 cut(s)	57, 66, 468, 517, 636, 717, 818
AclWI	GGATC	4 cut(s)	513, 782, 795, 1206
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	2 cut(s)	795, 1059
AcyI	GRCGYC	4 cut(s)	459, 514, 654, 714
AfiI	CCNNNNNNNGG	2 cut(s)	496, 1182
AgsI	TTSAA	5 cut(s)	1021, 1035, 1121, 1168, 1220
AjnI	CCWGG	3 cut(s)	708, 854, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	7 cut(s)	217, 644, 689, 862, 878, 990, 1017
AluI	AGCT	7 cut(s)	217, 644, 689, 862, 878, 990, 1017
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	4 cut(s)	513, 782, 795, 1206
AlwNI	CAGNNNCTG	1 cut(s)	855
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	3 cut(s)	58, 67, 421
ApeKI	GCWGC	7 cut(s)	611, 638, 641, 644, 872, 875, 1014
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
AspLEI	GCGC	5 cut(s)	110, 112, 391, 516, 549
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	8, 935, 1061, 1170
AvaI	CYCGRG	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	787
BanI	GGYRCC	2 cut(s)	513, 740
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	7 cut(s)	598, 625, 631, 653, 859, 887, 1026
BccI	CCATC	2 cut(s)	372, 1079
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	3 cut(s)	710, 856, 1182
BcoDI	GTCTC	1 cut(s)	559
BfmI	CTRYAG	3 cut(s)	46, 639, 873
BfoI	RGCGCY	2 cut(s)	517, 550
BglI	GCCNNNNNGGC	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	710, 856, 1182
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	4 cut(s)	70, 515, 742, 789
BmrFI	CCNGG	3 cut(s)	710, 856, 1182
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	5 cut(s)	323, 479, 598, 994, 1066
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	1094, 1126
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	548, 1150
BsaHI	GRCGYC	4 cut(s)	459, 514, 654, 714
BsaJI	CCNNGG	4 cut(s)	793, 854, 855, 1181
BsaXI	ACNNNNNCTCC	8 cut(s)	119, 149, 233, 263, 263, 293, 835, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 1182
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	2 cut(s)	506, 1008
BseBI	CCWGG	3 cut(s)	710, 856, 1182
BseDI	CCNNGG	4 cut(s)	793, 854, 855, 1181
BseGI	GGATG	2 cut(s)	613, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	496, 1182
BseMII	CTCAG	1 cut(s)	1092
BseNI	ACTGG	2 cut(s)	506, 1008
BsePI	GCGCGC	1 cut(s)	108
BseRI	GAGGAG	3 cut(s)	238, 292, 346
BseXI	GCAGC	7 cut(s)	598, 625, 631, 653, 859, 887, 1026
Bsh1236I	CGCG	2 cut(s)	108, 110
BshFI	GGCC	3 cut(s)	60, 69, 423
BshNI	GGYRCC	2 cut(s)	513, 740
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	738, 744
BslFI	GGGAC	4 cut(s)	307, 512, 837, 869
BslI	CCNNNNNNNGG	2 cut(s)	496, 1182
BsmAI	GTCTC	1 cut(s)	559
BsmFI	GGGAC	4 cut(s)	307, 512, 837, 869
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	60, 69, 423
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
BspACI	CCGC	7 cut(s)	57, 66, 468, 517, 636, 717, 818
BspANI	GGCC	3 cut(s)	60, 69, 423
BspCNI	CTCAG	1 cut(s)	1093
BspFNI	CGCG	2 cut(s)	108, 110
BspLI	GGNNCC	4 cut(s)	70, 515, 742, 789
BspMAI	CTGCAG	2 cut(s)	643, 877
BspPI	GGATC	4 cut(s)	513, 782, 795, 1206
BspT107I	GGYRCC	2 cut(s)	513, 740
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	2 cut(s)	506, 1008
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	4 cut(s)	793, 854, 855, 1181
BssHII	GCGCGC	1 cut(s)	108
BssMI	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
BssNI	GRCGYC	4 cut(s)	459, 514, 654, 714
Bst2UI	CCWGG	3 cut(s)	710, 856, 1182
Bst4CI	ACNGT	3 cut(s)	20, 50, 851
Bst6I	CTCTTC	1 cut(s)	658
BstACI	GRCGYC	4 cut(s)	459, 514, 654, 714
BstC8I	GCNNGC	5 cut(s)	110, 114, 512, 864, 939
BstDEI	CTNAG	2 cut(s)	526, 1101
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	2 cut(s)	613, 1009
BstFNI	CGCG	2 cut(s)	108, 110
BstH2I	RGCGCY	2 cut(s)	517, 550
BstHHI	GCGC	5 cut(s)	110, 112, 391, 516, 549
BstKTI	GATC	5 cut(s)	508, 790, 1054, 1096, 1201
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
BstNI	CCWGG	3 cut(s)	710, 856, 1182
BstSCI	CCNGG	3 cut(s)	708, 854, 1180
BstSFI	CTRYAG	3 cut(s)	46, 639, 873
BstUI	CGCG	2 cut(s)	108, 110
BstV1I	GCAGC	7 cut(s)	598, 625, 631, 653, 859, 887, 1026
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	787, 1198
BstXI	CCANNNNNNTGG	1 cut(s)	1000
BstYI	RGATCY	2 cut(s)	787, 1198
BsuRI	GGCC	3 cut(s)	60, 69, 423
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	2 cut(s)	613, 1009
BtsIMutI	CAGTG	1 cut(s)	1015
Cac8I	GCNNGC	5 cut(s)	110, 114, 512, 864, 939
CaiI	CAGNNNCTG	1 cut(s)	855
CfoI	GCGC	5 cut(s)	110, 112, 391, 516, 549
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	4 cut(s)	114, 424, 467, 722
CviAII	CATG	3 cut(s)	12, 90, 824
DdeI	CTNAG	2 cut(s)	526, 1101
DinI	GGCGCC	1 cut(s)	515
DpnI	GATC	5 cut(s)	507, 789, 1053, 1095, 1200
DpnII	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
DraI	TTTAAA	1 cut(s)	951
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	795, 1059
Eco88I	CYCGRG	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	708, 854, 1180
EgeI	GGCGCC	1 cut(s)	515
EheI	GGCGCC	1 cut(s)	515
FaeI	CATG	3 cut(s)	15, 93, 827
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 534, 566
FaqI	GGGAC	4 cut(s)	307, 512, 837, 869
FatI	CATG	3 cut(s)	11, 89, 823
FblI	GTMKAC	1 cut(s)	1191
FokI	GGATG	2 cut(s)	620, 1016
GlaI	GCGC	5 cut(s)	109, 111, 390, 515, 548
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	2 cut(s)	517, 550
HaeIII	GGCC	3 cut(s)	60, 69, 423
HapII	CCGG	2 cut(s)	738, 744
HgaI	GACGC	4 cut(s)	114, 424, 467, 722
HhaI	GCGC	5 cut(s)	110, 112, 391, 516, 549
Hin1I	GRCGYC	4 cut(s)	459, 514, 654, 714
Hin1II	CATG	3 cut(s)	15, 93, 827
Hin6I	GCGC	5 cut(s)	108, 110, 389, 514, 547
HinP1I	GCGC	5 cut(s)	108, 110, 389, 514, 547
HinfI	GANTC	8 cut(s)	317, 362, 428, 666, 974, 1021, 1031, 1141
HpaII	CCGG	2 cut(s)	738, 744
HphI	GGTGA	4 cut(s)	8, 935, 1061, 1170
Hpy166II	GTNNAC	1 cut(s)	1192
Hpy188I	TCNGA	6 cut(s)	361, 480, 728, 775, 1093, 1102
Hpy188III	TCNNGA	4 cut(s)	314, 394, 971, 1129
Hpy8I	GTNNAC	1 cut(s)	1192
Hpy99I	CGWCG	4 cut(s)	257, 488, 656, 659
HpyAV	CCTTC	8 cut(s)	148, 285, 307, 357, 569, 778, 1147, 1180
HpyCH4III	ACNGT	3 cut(s)	20, 50, 851
HpyCH4IV	ACGT	2 cut(s)	34, 654
HpyCH4V	TGCA	9 cut(s)	93, 571, 593, 629, 641, 647, 875, 1064, 1079
HpyF3I	CTNAG	2 cut(s)	526, 1101
HpySE526I	ACGT	2 cut(s)	34, 654
Hsp92I	GRCGYC	4 cut(s)	459, 514, 654, 714
Hsp92II	CATG	3 cut(s)	15, 93, 827
HspAI	GCGC	5 cut(s)	108, 110, 389, 514, 547
KasI	GGCGCC	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
LmnI	GCTCC	5 cut(s)	199, 396, 820, 859, 995
Lsp1109I	GCAGC	7 cut(s)	598, 625, 631, 653, 859, 887, 1026
LweI	GCATC	5 cut(s)	323, 479, 598, 994, 1066
MaeII	ACGT	2 cut(s)	34, 654
MaeIII	GTNAC	4 cut(s)	14, 811, 845, 1171
MalI	GATC	5 cut(s)	507, 789, 1053, 1095, 1200
MboI	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	2 cut(s)	787, 1198
MluCI	AATT	3 cut(s)	439, 630, 801
Mly113I	GGCGCC	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	356, 675
MmeI	TCCRAC	2 cut(s)	384, 640
MseI	TTAA	2 cut(s)	905, 950
MspA1I	CMGCKG	4 cut(s)	66, 638, 644, 878
MspI	CCGG	2 cut(s)	738, 744
MspR9I	CCNGG	3 cut(s)	710, 856, 1182
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	3 cut(s)	710, 856, 1182
MvnI	CGCG	2 cut(s)	108, 110
NarI	GGCGCC	1 cut(s)	514
NdeII	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
NlaIII	CATG	3 cut(s)	15, 93, 827
NlaIV	GGNNCC	4 cut(s)	70, 515, 742, 789
NmuCI	GTSAC	2 cut(s)	14, 1171
PaeR7I	CTCGAG	1 cut(s)	304
PasI	CCCWGGG	1 cut(s)	855
PauI	GCGCGC	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	6 cut(s)	317, 428, 974, 1021, 1031, 1141
PleI	GAGTC	2 cut(s)	356, 674
PluTI	GGCGCC	1 cut(s)	517
PpsI	GAGTC	2 cut(s)	356, 674
Psp6I	CCWGG	3 cut(s)	708, 854, 1180
PspGI	CCWGG	3 cut(s)	708, 854, 1180
PspN4I	GGNNCC	4 cut(s)	70, 515, 742, 789
PspPI	GGNCC	1 cut(s)	68
PspXI	VCTCGAGB	1 cut(s)	304
PstI	CTGCAG	2 cut(s)	643, 877
PstNI	CAGNNNCTG	1 cut(s)	855
PsuI	RGATCY	2 cut(s)	787, 1198
PteI	GCGCGC	1 cut(s)	108
PvuII	CAGCTG	2 cut(s)	644, 878
SaqAI	TTAA	2 cut(s)	905, 950
Sau3AI	GATC	5 cut(s)	505, 787, 1051, 1093, 1198
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	356, 675
ScrFI	CCNGG	3 cut(s)	710, 856, 1182
SfaNI	GCATC	5 cut(s)	323, 479, 598, 994, 1066
SfcI	CTRYAG	3 cut(s)	46, 639, 873
SfiI	GGCCNNNNNGGCC	1 cut(s)	66
SfoI	GGCGCC	1 cut(s)	515
Sfr274I	CTCGAG	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	304
SmlI	CTYRAG	3 cut(s)	304, 563, 1129
SmoI	CTYRAG	3 cut(s)	304, 563, 1129
Sse9I	AATT	3 cut(s)	439, 630, 801
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	7 cut(s)	57, 66, 468, 517, 636, 717, 818
SspDI	GGCGCC	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	3 cut(s)	708, 854, 1180
TaaI	ACNGT	3 cut(s)	20, 50, 851
TaiI	ACGT	2 cut(s)	37, 657
TaqI	TCGA	5 cut(s)	305, 426, 534, 808, 1208
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	3 cut(s)	439, 630, 801
TauI	GCSGC	5 cut(s)	60, 69, 519, 638, 719
TfiI	GAWTC	6 cut(s)	317, 428, 974, 1021, 1031, 1141
Tru1I	TTAA	2 cut(s)	905, 950
Tru9I	TTAA	2 cut(s)	905, 950
TscAI	CASTG	1 cut(s)	1015
TseFI	GTSAC	2 cut(s)	14, 1171
TseI	GCWGC	7 cut(s)	611, 638, 641, 644, 872, 875, 1014
Tsp45I	GTSAC	2 cut(s)	14, 1171
TspDTI	ATGAA	2 cut(s)	78, 1257
TspGWI	ACGGA	2 cut(s)	175, 241
TspRI	CASTG	1 cut(s)	1015
XhoI	CTCGAG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	1191
ZraI	GACGTC	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.