Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004166

Physical Location & Seq

Genomic Coordinates Reverse (-)

26025067 .. 26032625

Gene Structure 7559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGCTTCCATCTCTGCTCCAACCCCAGCTCCTCACAACCTTACCTTCCCCAACCCCAAATCCTACCCCTCCTCCGCTTCGAAAACCCCATTGTACCCTTCCTCTTCCTCTAGATTCTCCGATTCATCCCTCTGCCGGTGCCGGAACCCTTCCTCCGACGACTCAGTCCATTGGAGATGGGACTCTGCGCTCCAGGACCTCGTCAAAAACGCCATGAAACGACTCGATTTCCAAGGAGGAGGAAGCGCTAGCAAGGCCGACGAGGAGGAGCCCGACTGGGATTGGGATCGCTGGCGTCAGCATTTCCTCGAGGTCGAAGACCAAGAGCGCCTCGTCTCACTTCTCAAGTCACAGTTGGGTCGAGCTGTAAATGTAGAGGATTTTGAGGATGCTGCTAGGCTCAAGGTTGCCATTGCTGCCGCCTCCACAAACGACGTCGTCGGCTCAGTCATTTCTCGTCTCAATAGAGCTATACAGGACGAGCGTTACCAGGAAGCAGCATTTTTCCGGGATAATGCCGGTGCTGGATTGGTGGGTTGGTGGGCTGGCATCTCTAAGGATAAGAAGGACCCTCACGGCCTAATTATACGAGTAACTGCAGAGCATGGACGATATGTCGCAAGGAGTTATAGTCCCCGGCAGCTCGCTACAGCTGCAGCTGGTGTTCCACTGTTTGAGATCTTTTTAACAGTGAATAAAAAGGGTGAATACAAACAACAGGCTGTGTACTTAAAGCGGGGAGGAGTATTTCCAGATTCTCCACAAGTTAGCTCCAAAGCAATGGACACCACTACCACCTTGAATCCTTTAGATTCAACTGAAGAAAAAAGCGATCTATTTCTTGGAGGTAGTGACGATACTGAAGATGGTGATGATATGGATGATGATTTGGATCTTTCTGAGGGACTCTCTGGATTTCAGAGCATCTTGAGGGATATGATTCCTAATGTGAAGGTCAAGGTCTTGAAAGTGACATCACCAGGAAAGGTAGATCGGGATCTAATATCTAAAGTGATTGAGCAGATCATTGAGGAAGATGATGAAGATAAGGATAATGAAATCGAGAATTCAGAAGCTGAAGATGAGGACGAGGACGAAGACGAAGAAAAGGTTGAAGGTGATCAAGAGACAGATGTGATTGAACTGGATGATGATCCTGCAATTATTCAAAATGCTGAGAGACAAGAAATTGCAGTTAAAGTTGTTTTTGGTGGTTTTGGGCAGAAAATATCTAACATCCCACCTAGTAAAAATTTGCTCCGAGTCCCTGCTAAAATAGAGAAGAAGGGGCGTTTATCCTTTTCTTTTACTGTTGAGAAAGATATTAATAAACAGGATTCTCGTGACAAGGAACTAAGTTCAGGAGATAAAAAAGCTAAAGTTGGAGGTCAACGTAGTATTGACAATGTAATGTTTGATCTTGCTAAGTTCATTGGAAAAGAGAAGATACCATTGAAGGTACTCAAAGATGTTGGTGAGTTGATAAATCTCGCTCTCAGTCAGGTTCATAATCATCAGCCATTGTCAGGATCTACTACTTTCAATCGCATTGAAATGCCCGTTTCTCAAGATCCATTAAATGGACTATACATTGGTGCACATGGGCTCTACACCTCAGAAGTTATTCACCTGAGACGTAAGTTTGGCCAATGGAAAGAAGACAATGGGACTAAGGAACCCTCAAACCTTGAGTTTTATGAATATGTGGAAGCCTTAAAACTTACCGGGGATCCTTATGTACCAGCTGGCCAGGTGGCATTCCGTGCAAAGATTGGGAAAAGATATCAGCTTCCTCATAAAGGGATCATACCAGAAGAGTTTGGAGTGGTTGCTCGATATAAAGGACAGGGGAGGCTTGCTGAGCCAGGGTTTCGTAATCCTCGATGGGTCGATGGTGAACTTGTTATTCTTGATGGAAAGTACATTAAAGGAGGACCTGTTGTTGGGTTTGTTTATTGGGCCCCAGAGTATCATTTCTTGGTGTTCTTTAATCGACTAAGGCTTCAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0008219 GO:0009579 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010343 GO:0012501 GO:0016020 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034357 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0042221 GO:0042493 GO:0042651 GO:0044424 GO:0044436 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071452 GO:0071496 GO:0097468 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3506 UVR

Protein Analysis

670

Amino Acids

74.81

Weight (kDa)

5.1

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_D1_bind	PF12014	514 - 667	3.7e-30	Cyclin D1 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33630 AT4G33630 AT4G33630
fragaria_vesca	FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660
malus_domestica	MD05G1048100.v1.1 MD10G1054700.v1.1
prunus_persica	Prupe.8G070300_v2.0.a1 Prupe.8G070300_v2.0.a1
pyrus_communis	pycom10g04160 pycom10g04170
rosa_chinensis	RchiOBHm_Chr6g0270901 RchiOBHm_Chr6g0270911
rosa_laevigata	RLG00000013760
rosa_multiflora	Rmu_co8045566.1_g000001 Rmu_sc0007274.1_g000002 Rmu_ssc0000474.1_g000011
rosa_roxburghii	Rroxscaffold_7G00197500
rosa_rugosa	Rorug06G0057200
rosa_samantha	Rh6AG176700 Rh6BG180100 Rh6CG176200 Rh6DG168400
rosa_wichuraiana	Rw6G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	438
AbsI	CCTCGAGG	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	1580
AciI	CCGC	3 cut(s)	75, 420, 736
AclWI	GGATC	9 cut(s)	294, 900, 1005, 1148, 1537, 1565, 1724, 1737, 1811
AcoI	YGGCCR	2 cut(s)	1645, 1747
AcsI	RAATTY	2 cut(s)	1066, 1252
AcuI	CTGAAG	3 cut(s)	840, 882, 1098
AcyI	GRCGYC	2 cut(s)	295, 435
AfaI	GTAC	5 cut(s)	95, 728, 1461, 1740, 1922
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	5 cut(s)	135, 1526, 1580, 1799, 1943
AhdI	GACNNNNNGTC	1 cut(s)	614
AjnI	CCWGG	5 cut(s)	192, 489, 979, 1749, 1864
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
Alw21I	GWGCWC	1 cut(s)	1600
Alw26I	GTCTC	5 cut(s)	340, 464, 1121, 1174, 1627
Alw44I	GTGCAC	1 cut(s)	1596
AlwI	GGATC	9 cut(s)	294, 900, 1005, 1148, 1537, 1565, 1724, 1737, 1811
AlwNI	CAGNNNCTG	1 cut(s)	1076
Ama87I	CYCGRG	1 cut(s)	308
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	5 cut(s)	255, 577, 1645, 1747, 1959
ApaI	GGGCCC	1 cut(s)	1963
ApaLI	GTGCAC	1 cut(s)	1596
ApeKI	GCWGC	6 cut(s)	392, 416, 497, 640, 653, 656
ApoI	RAATTY	2 cut(s)	1066, 1252
AseI	ATTAAT	1 cut(s)	1326
Asp700I	GAANNNNTTC	1 cut(s)	1623
AspLEI	GCGC	3 cut(s)	190, 248, 330
AspS9I	GGNCC	5 cut(s)	196, 568, 1934, 1959, 1960
AsuC2I	CCSGG	3 cut(s)	509, 637, 1726
AsuHPI	GGTGA	7 cut(s)	716, 881, 969, 1130, 1487, 1619, 1907
AsuII	TTCGAA	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	3 cut(s)	196, 568, 1934
BaeGI	GKGCMC	2 cut(s)	1600, 1963
BalI	TGGCCA	2 cut(s)	1647, 1749
BamHI	GGATCC	1 cut(s)	1729
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	3 cut(s)	273, 1608, 1963
BauI	CACGAG	1 cut(s)	1341
BbsI	GAAGAC	3 cut(s)	324, 1104, 1665
Bbv12I	GWGCWC	1 cut(s)	1600
BbvI	GCAGC	6 cut(s)	379, 403, 509, 640, 652, 668
BccI	CCATC	6 cut(s)	17, 171, 860, 1878, 1886, 1907
BceAI	ACGGC	1 cut(s)	592
BciT130I	CCWGG	5 cut(s)	194, 491, 981, 1751, 1866
BclI	TGATCA	1 cut(s)	1120
BcnI	CCSGG	3 cut(s)	509, 637, 1726
BcoDI	GTCTC	5 cut(s)	340, 464, 1121, 1174, 1627
BfaI	CTAG	5 cut(s)	111, 249, 396, 1245, 2011
BfmI	CTRYAG	3 cut(s)	597, 648, 654
BfoI	RGCGCY	2 cut(s)	249, 331
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	7 cut(s)	393, 417, 420, 498, 641, 654, 657
BlpI	GCTNAGC	1 cut(s)	1860
BlsI	GCNGC	7 cut(s)	394, 418, 421, 499, 642, 655, 658
Bme1390I	CCNGG	8 cut(s)	194, 491, 509, 637, 981, 1726, 1751, 1866
Bme18I	GGWCC	3 cut(s)	196, 568, 1934
BmeRI	GACNNNNNGTC	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	5 cut(s)	196, 568, 1934, 1959, 1960
BmiI	GGNNCC	8 cut(s)	140, 146, 270, 570, 1677, 1731, 1961, 1962
BmrFI	CCNGG	8 cut(s)	194, 491, 509, 637, 981, 1726, 1751, 1866
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	379, 558, 933
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	286
BpiI	GAAGAC	3 cut(s)	324, 1104, 1665
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	1860
Bpu14I	TTCGAA	1 cut(s)	80
BpuEI	CTTGAG	5 cut(s)	329, 386, 949, 1551, 1709
BpuMI	CCSGG	3 cut(s)	509, 637, 1726
BsaBI	GATNNNNATC	4 cut(s)	285, 891, 996, 1152
BsaHI	GRCGYC	2 cut(s)	295, 435
BsaJI	CCNNGG	4 cut(s)	232, 635, 1725, 1865
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 1526, 1580, 1799, 1943
Bse118I	RCCGGY	2 cut(s)	135, 518
Bse1I	ACTGG	2 cut(s)	281, 1149
Bse3DI	GCAATG	2 cut(s)	411, 786
Bse8I	GATNNNNATC	4 cut(s)	285, 891, 996, 1152
BseBI	CCWGG	5 cut(s)	194, 491, 981, 1751, 1866
BseDI	CCNNGG	4 cut(s)	232, 635, 1725, 1865
BseGI	GGATG	5 cut(s)	125, 394, 886, 1153, 1236
BseJI	GATNNNNATC	4 cut(s)	285, 891, 996, 1152
BseLI	CCNNNNNNNGG	5 cut(s)	135, 1526, 1580, 1799, 1943
BseMI	GCAATG	2 cut(s)	411, 786
BseMII	CTCAG	8 cut(s)	177, 459, 891, 1167, 1510, 1622, 1629, 1851
BseNI	ACTGG	2 cut(s)	281, 1149
BseRI	GAGGAG	6 cut(s)	21, 61, 252, 278, 281, 756
BseSI	GKGCMC	2 cut(s)	1600, 1963
BseXI	GCAGC	6 cut(s)	379, 403, 509, 640, 652, 668
BseYI	CCCAGC	1 cut(s)	25
BshFI	GGCC	5 cut(s)	257, 579, 1647, 1749, 1961
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	1600
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	6 cut(s)	136, 142, 508, 519, 637, 1725
BslFI	GGGAC	5 cut(s)	194, 618, 918, 1250, 1681
BslI	CCNNNNNNNGG	5 cut(s)	135, 1526, 1580, 1799, 1943
BsmAI	GTCTC	5 cut(s)	340, 464, 1121, 1174, 1627
BsmBI	CGTCTC	3 cut(s)	340, 464, 1627
BsmFI	GGGAC	5 cut(s)	194, 618, 918, 1250, 1681
BsmI	GAATGC	1 cut(s)	1757
BsnI	GGCC	5 cut(s)	257, 579, 1647, 1749, 1961
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	80
Bsp120I	GGGCCC	1 cut(s)	1959
Bsp1286I	GDGCHC	4 cut(s)	273, 1600, 1608, 1963
Bsp1720I	GCTNAGC	1 cut(s)	1860
BspACI	CCGC	3 cut(s)	75, 420, 736
BspANI	GGCC	5 cut(s)	257, 579, 1647, 1749, 1961
BspCNI	CTCAG	8 cut(s)	176, 458, 892, 1168, 1509, 1623, 1628, 1852
BspLI	GGNNCC	8 cut(s)	140, 146, 270, 570, 1677, 1731, 1961, 1962
BspMAI	CTGCAG	2 cut(s)	601, 658
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	9 cut(s)	294, 900, 1005, 1148, 1537, 1565, 1724, 1737, 1811
BspT104I	TTCGAA	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	411, 786
BsrFI	RCCGGY	2 cut(s)	135, 518
BsrI	ACTGG	2 cut(s)	281, 1149
BssAI	RCCGGY	2 cut(s)	135, 518
BssECI	CCNNGG	4 cut(s)	232, 635, 1725, 1865
BssNI	GRCGYC	2 cut(s)	295, 435
BssSI	CACGAG	1 cut(s)	1341
BssT1I	CCWWGG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	1341
Bst2UI	CCWGG	5 cut(s)	194, 491, 981, 1751, 1866
Bst4CI	ACNGT	4 cut(s)	354, 672, 691, 1312
Bst6I	CTCTTC	2 cut(s)	109, 1809
BstACI	GRCGYC	2 cut(s)	295, 435
BstAPI	GCANNNNNTGC	1 cut(s)	1763
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	6 cut(s)	250, 293, 547, 645, 1747, 1857
BstENI	CCTNNNNNAGG	1 cut(s)	1797
BstF5I	GGATG	5 cut(s)	125, 394, 886, 1153, 1236
BstH2I	RGCGCY	2 cut(s)	249, 331
BstHHI	GCGC	3 cut(s)	190, 248, 330
BstMAI	GTCTC	5 cut(s)	340, 464, 1121, 1174, 1627
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 416, 653, 1763, 1861
BstNI	CCWGG	5 cut(s)	194, 491, 981, 1751, 1866
BstSCI	CCNGG	8 cut(s)	192, 489, 507, 635, 979, 1724, 1749, 1864
BstSFI	CTRYAG	3 cut(s)	597, 648, 654
BstSLI	GKGCMC	2 cut(s)	1600, 1963
BstV1I	GCAGC	6 cut(s)	379, 403, 509, 640, 652, 668
BstV2I	GAAGAC	3 cut(s)	324, 1104, 1665
BstX2I	RGATCY	6 cut(s)	678, 892, 997, 1529, 1570, 1729
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	6 cut(s)	678, 892, 997, 1529, 1570, 1729
BsuRI	GGCC	5 cut(s)	257, 579, 1647, 1749, 1961
BtsCI	GGATG	5 cut(s)	125, 394, 886, 1153, 1236
BtsIMutI	CAGTG	2 cut(s)	668, 696
Cac8I	GCNNGC	6 cut(s)	250, 293, 547, 645, 1747, 1857
CaiI	CAGNNNCTG	1 cut(s)	1076
CfoI	GCGC	3 cut(s)	190, 248, 330
Cfr10I	RCCGGY	2 cut(s)	135, 518
Cfr13I	GGNCC	5 cut(s)	196, 568, 1934, 1959, 1960
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	5 cut(s)	94, 727, 1460, 1739, 1921
CviAII	CATG	3 cut(s)	214, 605, 1601
CviQI	GTAC	5 cut(s)	94, 727, 1460, 1739, 1921
DrdI	GACNNNNNNGTC	1 cut(s)	164
DriI	GACNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	1645, 1747
Eam1104I	CTCTTC	2 cut(s)	109, 1809
Eam1105I	GACNNNNNGTC	1 cut(s)	614
EarI	CTCTTC	2 cut(s)	109, 1809
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	3 cut(s)	273, 1608, 1963
Eco32I	GATATC	1 cut(s)	1784
Eco47I	GGWCC	3 cut(s)	196, 568, 1934
Eco47III	AGCGCT	1 cut(s)	247
Eco57I	CTGAAG	3 cut(s)	840, 882, 1098
Eco88I	CYCGRG	1 cut(s)	308
EcoNI	CCTNNNNNAGG	1 cut(s)	1797
EcoO109I	RGGNCCY	4 cut(s)	196, 568, 1934, 1960
EcoRI	GAATTC	1 cut(s)	1066
EcoRII	CCWGG	5 cut(s)	192, 489, 979, 1749, 1864
EcoRV	GATATC	1 cut(s)	1784
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	3 cut(s)	273, 1608, 1963
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	3 cut(s)	340, 464, 1627
FaeI	CATG	3 cut(s)	217, 608, 1604
FaqI	GGGAC	5 cut(s)	194, 618, 918, 1250, 1681
FatI	CATG	3 cut(s)	213, 604, 1600
FauI	CCCGC	1 cut(s)	729
FbaI	TGATCA	1 cut(s)	1120
Fnu4HI	GCNGC	7 cut(s)	393, 417, 420, 498, 641, 654, 657
FokI	GGATG	5 cut(s)	112, 401, 893, 1160, 1223
FriOI	GRGCYC	3 cut(s)	273, 1608, 1963
Fsp4HI	GCNGC	7 cut(s)	393, 417, 420, 498, 641, 654, 657
FspBI	CTAG	5 cut(s)	111, 249, 396, 1245, 2011
GlaI	GCGC	3 cut(s)	189, 247, 329
GluI	GCNGC	7 cut(s)	393, 417, 420, 498, 641, 654, 657
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	2 cut(s)	249, 331
HaeIII	GGCC	5 cut(s)	257, 579, 1647, 1749, 1961
HapII	CCGG	6 cut(s)	136, 142, 508, 519, 637, 1725
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	3 cut(s)	190, 248, 330
Hin1I	GRCGYC	2 cut(s)	295, 435
Hin1II	CATG	3 cut(s)	217, 608, 1604
Hin6I	GCGC	3 cut(s)	188, 246, 328
HinP1I	GCGC	3 cut(s)	188, 246, 328
HincII	GTYRAC	1 cut(s)	1391
HindII	GTYRAC	1 cut(s)	1391
HpaII	CCGG	6 cut(s)	136, 142, 508, 519, 637, 1725
HphI	GGTGA	7 cut(s)	716, 881, 969, 1130, 1487, 1619, 1907
Hpy166II	GTNNAC	4 cut(s)	727, 1391, 1598, 1898
Hpy188I	TCNGA	7 cut(s)	121, 157, 901, 921, 1072, 1262, 1618
Hpy8I	GTNNAC	4 cut(s)	727, 1391, 1598, 1898
Hpy99I	CGWCG	5 cut(s)	161, 263, 437, 440, 443
HpyAV	CCTTC	8 cut(s)	55, 108, 159, 559, 946, 1109, 1279, 1450
HpyCH4III	ACNGT	4 cut(s)	354, 672, 691, 1312
HpyCH4IV	ACGT	3 cut(s)	435, 1393, 1636
HpyCH4V	TGCA	6 cut(s)	599, 656, 1160, 1193, 1598, 1766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 416, 653, 1763, 1861
HpySE526I	ACGT	3 cut(s)	435, 1393, 1636
Hsp92I	GRCGYC	2 cut(s)	295, 435
Hsp92II	CATG	3 cut(s)	217, 608, 1604
HspAI	GCGC	3 cut(s)	188, 246, 328
Ksp22I	TGATCA	1 cut(s)	1120
LmnI	GCTCC	6 cut(s)	22, 34, 195, 268, 776, 1263
Lsp1109I	GCAGC	6 cut(s)	379, 403, 509, 640, 652, 668
LweI	GCATC	3 cut(s)	379, 558, 933
MaeI	CTAG	5 cut(s)	111, 249, 396, 1245, 2011
MaeII	ACGT	3 cut(s)	435, 1393, 1636
MaeIII	GTNAC	6 cut(s)	348, 485, 592, 851, 970, 1343
MflI	RGATCY	6 cut(s)	678, 892, 997, 1529, 1570, 1729
MhlI	GDGCHC	4 cut(s)	273, 1600, 1608, 1963
MlsI	TGGCCA	2 cut(s)	1647, 1749
MluCI	AATT	5 cut(s)	582, 1066, 1161, 1188, 1252
MluNI	TGGCCA	2 cut(s)	1647, 1749
MlyI	GAGTC	5 cut(s)	155, 176, 216, 900, 1272
MmeI	TCCRAC	3 cut(s)	44, 180, 1363
Mox20I	TGGCCA	2 cut(s)	1647, 1749
MroXI	GAANNNNTTC	1 cut(s)	1623
MscI	TGGCCA	2 cut(s)	1647, 1749
MseI	TTAA	8 cut(s)	686, 731, 1197, 1326, 1577, 1715, 1926, 1989
MslI	CAYNNNNRTG	1 cut(s)	1553
Msp20I	TGGCCA	2 cut(s)	1647, 1749
MspA1I	CMGCKG	3 cut(s)	653, 659, 1745
MspI	CCGG	6 cut(s)	136, 142, 508, 519, 637, 1725
MspR9I	CCNGG	8 cut(s)	194, 491, 509, 637, 981, 1726, 1751, 1866
Mva1269I	GAATGC	1 cut(s)	1757
MvaI	CCWGG	5 cut(s)	194, 491, 981, 1751, 1866
MwoI	GCNNNNNNNGC	5 cut(s)	254, 416, 653, 1763, 1861
NciI	CCSGG	3 cut(s)	509, 637, 1726
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	217, 608, 1604
NlaIV	GGNNCC	8 cut(s)	140, 146, 270, 570, 1677, 1731, 1961, 1962
NmuCI	GTSAC	4 cut(s)	348, 851, 970, 1343
NspV	TTCGAA	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	1879
PctI	GAATGC	1 cut(s)	1757
PdmI	GAANNNNTTC	1 cut(s)	1623
PfeI	GAWTC	7 cut(s)	114, 122, 755, 802, 812, 940, 1337
PflFI	GACNNNGTC	3 cut(s)	164, 200, 437
PflMI	CCANNNNNTGG	1 cut(s)	1580
PfoI	TCCNGGA	2 cut(s)	192, 507
PkrI	GCNGC	7 cut(s)	394, 418, 421, 499, 642, 655, 658
PleI	GAGTC	5 cut(s)	155, 176, 216, 900, 1271
PpsI	GAGTC	5 cut(s)	155, 176, 216, 900, 1271
PpuMI	RGGWCCY	3 cut(s)	196, 568, 1934
PshBI	ATTAAT	1 cut(s)	1326
Psp5II	RGGWCCY	3 cut(s)	196, 568, 1934
Psp6I	CCWGG	5 cut(s)	192, 489, 979, 1749, 1864
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	5 cut(s)	192, 489, 979, 1749, 1864
PspN4I	GGNNCC	8 cut(s)	140, 146, 270, 570, 1677, 1731, 1961, 1962
PspOMI	GGGCCC	1 cut(s)	1959
PspPI	GGNCC	5 cut(s)	196, 568, 1934, 1959, 1960
PspPPI	RGGWCCY	3 cut(s)	196, 568, 1934
PspXI	VCTCGAGB	1 cut(s)	308
PstI	CTGCAG	2 cut(s)	601, 658
PstNI	CAGNNNCTG	1 cut(s)	1076
PsuI	RGATCY	6 cut(s)	678, 892, 997, 1529, 1570, 1729
PsyI	GACNNNGTC	3 cut(s)	164, 200, 437
PvuII	CAGCTG	3 cut(s)	653, 659, 1745
RsaI	GTAC	5 cut(s)	95, 728, 1461, 1740, 1922
RsaNI	GTAC	5 cut(s)	94, 727, 1460, 1739, 1921
RseI	CAYNNNNRTG	1 cut(s)	1553
SaqAI	TTAA	8 cut(s)	686, 731, 1197, 1326, 1577, 1715, 1926, 1989
SatI	GCNGC	7 cut(s)	393, 417, 420, 498, 641, 654, 657
Sau96I	GGNCC	5 cut(s)	196, 568, 1934, 1959, 1960
SchI	GAGTC	5 cut(s)	155, 176, 216, 900, 1272
ScrFI	CCNGG	8 cut(s)	194, 491, 509, 637, 981, 1726, 1751, 1866
SduI	GDGCHC	4 cut(s)	273, 1600, 1608, 1963
SfaNI	GCATC	3 cut(s)	379, 558, 933
SfcI	CTRYAG	3 cut(s)	597, 648, 654
Sfr274I	CTCGAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	3 cut(s)	196, 568, 1934
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	1553
SmlI	CTYRAG	6 cut(s)	308, 344, 401, 928, 1566, 1688
SmoI	CTYRAG	6 cut(s)	308, 344, 401, 928, 1566, 1688
Sse9I	AATT	5 cut(s)	582, 1066, 1161, 1188, 1252
SsiI	CCGC	3 cut(s)	75, 420, 736
SspMI	CTAG	5 cut(s)	111, 249, 396, 1245, 2011
StyD4I	CCNGG	8 cut(s)	192, 489, 507, 635, 979, 1724, 1749, 1864
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	4 cut(s)	354, 672, 691, 1312
TaiI	ACGT	3 cut(s)	438, 1396, 1639
TasI	AATT	5 cut(s)	582, 1066, 1161, 1188, 1252
TatI	WGTACW	2 cut(s)	726, 1920
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	7 cut(s)	114, 122, 755, 802, 812, 940, 1337
Tru1I	TTAA	8 cut(s)	686, 731, 1197, 1326, 1577, 1715, 1926, 1989
Tru9I	TTAA	8 cut(s)	686, 731, 1197, 1326, 1577, 1715, 1926, 1989
TscAI	CASTG	2 cut(s)	675, 696
TseFI	GTSAC	4 cut(s)	348, 851, 970, 1343
TseI	GCWGC	6 cut(s)	392, 416, 497, 640, 653, 656
Tsp45I	GTSAC	4 cut(s)	348, 851, 970, 1343
TspDTI	ATGAA	7 cut(s)	114, 230, 1056, 1071, 1420, 1496, 1713
TspGWI	ACGGA	1 cut(s)	1751
TspRI	CASTG	2 cut(s)	675, 696
Tth111I	GACNNNGTC	3 cut(s)	164, 200, 437
Van91I	CCANNNNNTGG	1 cut(s)	1580
VneI	GTGCAC	1 cut(s)	1596
VpaK11BI	GGWCC	3 cut(s)	196, 568, 1934
VspI	ATTAAT	1 cut(s)	1326
XagI	CCTNNNNNAGG	1 cut(s)	1797
XapI	RAATTY	2 cut(s)	1066, 1252
XbaI	TCTAGA	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	1623
XspI	CTAG	5 cut(s)	111, 249, 396, 1245, 2011
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.