Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004166

Physical Location & Seq

Genomic Coordinates Forward (+)

4436619 .. 4438547

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTTGATCTCTCTAAGTTCATGGGTAAAGAGAAGATACCACAGAAGGTACTCAAAGATGTTGGCGAGTTAATAAATCTTGCTCTCAGCCAGGTTAACGACCATCAACCACTGTCAGGAACAACCACTTTCAATCGCATTGAAATGCCGGCTTCTCCAGATCCTTTAAATGGGATTTACATTGGTGCTCATGGGCTCCACACCTCAGAAGTTATTCACCTGAGACGTAAATTTGGTCAATGGAAAGAGGATGGAGGGACTGCAGAGCCTCTAAACCTTGAGTTTTATGAATATGTAGAAGCCTTAAAACTTACTGGGGATCCTTATGTACCTGCTGGCCAGGTGGCATTTCGTGCAAAGATTGGGAAAGGATATCAGCTTCCTCATAAAGGGATTATACCAGAAGAATTTGGAGTGGTTGCTCGATATAAAGGACAGGGGAGGCTTGCCGAGCCAGGGTTTCGCAATCCCCGATGGGTCGATGGTGAACTTGTTATTCTTGACGGGAAGTACATTAAGGGTGGACCTGTTGTTGGATTTGTTTACTGGGCTCCCGAGGATCATTTCTTGGCGTTCTTCAATCGGTTGAGGCTTCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0008219 GO:0009579 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010343 GO:0012501 GO:0016020 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034357 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0042221 GO:0042493 GO:0042651 GO:0044424 GO:0044436 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071452 GO:0071496 GO:0097468 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3506 UVR

Protein Analysis

201

Amino Acids

22.48

Weight (kDa)

7.03

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_D1_bind	PF12014	44 - 199	2.7e-30	Cyclin D1 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33630 AT4G33630 AT4G33630
fragaria_vesca	FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660 FvH4_2g11660
malus_domestica	MD05G1048100.v1.1 MD10G1054700.v1.1
prunus_persica	Prupe.8G070300_v2.0.a1 Prupe.8G070300_v2.0.a1
pyrus_communis	pycom10g04160 pycom10g04170
rosa_chinensis	RchiOBHm_Chr6g0270901 RchiOBHm_Chr6g0270911
rosa_laevigata	RLG00000013760
rosa_multiflora	Rmu_co8045566.1_g000001 Rmu_sc0007274.1_g000002 Rmu_ssc0000474.1_g000011
rosa_roxburghii	Rroxscaffold_7G00197500
rosa_rugosa	Rorug06G0057200
rosa_samantha	Rh6AG176700 Rh6BG180100 Rh6CG176200 Rh6DG168400
rosa_wichuraiana	Rw6G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AclWI	GGATC	4 cut(s)	155, 314, 327, 567
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	230, 407
AfaI	GTAC	3 cut(s)	51, 330, 512
AfiI	CCNNNNNNNGG	5 cut(s)	116, 170, 389, 456, 533
AgsI	TTSAA	4 cut(s)	133, 143, 580, 596
AjnI	CCWGG	3 cut(s)	90, 339, 454
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	4 cut(s)	155, 314, 327, 567
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	230, 407
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	209, 497
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	198, 553
Bbv12I	GWGCWC	1 cut(s)	190
BccI	CCATC	4 cut(s)	111, 245, 468, 476
BciT130I	CCWGG	3 cut(s)	92, 341, 456
BcoDI	GTCTC	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	92, 341, 456
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	3 cut(s)	197, 321, 552
BmrFI	CCNGG	3 cut(s)	92, 341, 456
BmrI	ACTGGG	2 cut(s)	324, 556
BmuI	ACTGGG	2 cut(s)	324, 556
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	455, 555
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 170, 389, 456, 533
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	319, 551
BseBI	CCWGG	3 cut(s)	92, 341, 456
BseDI	CCNNGG	2 cut(s)	455, 555
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	5 cut(s)	116, 170, 389, 456, 533
BseMII	CTCAG	3 cut(s)	100, 212, 219
BseNI	ACTGG	2 cut(s)	319, 551
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	5 cut(s)	116, 170, 389, 456, 533
BsmAI	GTCTC	1 cut(s)	217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	3 cut(s)	190, 198, 553
Bsp143I	GATC	4 cut(s)	7, 160, 319, 559
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	3 cut(s)	99, 213, 218
BspLI	GGNNCC	3 cut(s)	197, 321, 552
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	4 cut(s)	155, 314, 327, 567
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	319, 551
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	455, 555
BssMI	GATC	4 cut(s)	7, 160, 319, 559
Bst2UI	CCWGG	3 cut(s)	92, 341, 456
Bst4CI	ACNGT	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	150, 337, 447
BstDEI	CTNAG	4 cut(s)	15, 86, 205, 221
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	4 cut(s)	10, 163, 322, 562
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	4 cut(s)	7, 160, 319, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 451
BstNI	CCWGG	3 cut(s)	92, 341, 456
BstSCI	CCNGG	3 cut(s)	90, 339, 454
BstSFI	CTRYAG	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	160, 319
BstYI	RGATCY	2 cut(s)	160, 319
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	150, 337, 447
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	50, 329, 511
CviAII	CATG	2 cut(s)	22, 191
CviQI	GTAC	3 cut(s)	50, 329, 511
DdeI	CTNAG	4 cut(s)	15, 86, 205, 221
DpnI	GATC	4 cut(s)	9, 162, 321, 561
DpnII	GATC	4 cut(s)	7, 160, 319, 559
DraI	TTTAAA	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	198, 553
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	554
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoRII	CCWGG	3 cut(s)	90, 339, 454
EcoRV	GATATC	1 cut(s)	374
EcoT38I	GRGCYC	2 cut(s)	198, 553
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	2 cut(s)	25, 194
FaiI	YATR	8 cut(s)	23, 192, 288, 294, 327, 387, 398, 429
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	21, 190
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	2 cut(s)	198, 553
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	2 cut(s)	25, 194
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	209, 497
Hpy166II	GTNNAC	4 cut(s)	97, 488, 524, 544
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	5 cut(s)	117, 158, 500, 554, 596
Hpy8I	GTNNAC	4 cut(s)	97, 488, 524, 544
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	263, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 451
HpyF3I	CTNAG	4 cut(s)	15, 86, 205, 221
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	25, 194
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	7, 160, 319, 559
LmnI	GCTCC	2 cut(s)	201, 556
MaeII	ACGT	1 cut(s)	226
MalI	GATC	4 cut(s)	9, 162, 321, 561
MboI	GATC	4 cut(s)	7, 160, 319, 559
MboII	GAAGA	3 cut(s)	46, 416, 568
MflI	RGATCY	2 cut(s)	160, 319
MhlI	GDGCHC	3 cut(s)	190, 198, 553
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	2 cut(s)	230, 407
MluNI	TGGCCA	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	8 cut(s)	214, 241, 248, 279, 393, 435, 550, 582
Mox20I	TGGCCA	1 cut(s)	339
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	5 cut(s)	71, 96, 167, 305, 516
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	92, 341, 456
MvaI	CCWGG	3 cut(s)	92, 341, 456
MwoI	GCNNNNNNNGC	2 cut(s)	353, 451
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	4 cut(s)	7, 160, 319, 559
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	25, 194
NlaIV	GGNNCC	3 cut(s)	197, 321, 552
NmeAIII	GCCGAG	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	213
Psp6I	CCWGG	3 cut(s)	90, 339, 454
PspGI	CCWGG	3 cut(s)	90, 339, 454
PspN4I	GGNNCC	3 cut(s)	197, 321, 552
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	160, 319
RsaI	GTAC	3 cut(s)	51, 330, 512
RsaNI	GTAC	3 cut(s)	50, 329, 511
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	5 cut(s)	71, 96, 167, 305, 516
Sau3AI	GATC	4 cut(s)	7, 160, 319, 559
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	92, 341, 456
SduI	GDGCHC	3 cut(s)	190, 198, 553
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	230, 407
StyD4I	CCNGG	3 cut(s)	90, 339, 454
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	424, 480
TasI	AATT	2 cut(s)	230, 407
TatI	WGTACW	1 cut(s)	510
Tru1I	TTAA	5 cut(s)	71, 96, 167, 305, 516
Tru9I	TTAA	5 cut(s)	71, 96, 167, 305, 516
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	10, 303
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	524
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	2 cut(s)	230, 407
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.