Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001588

Physical Location & Seq

Genomic Coordinates Reverse (-)

4922911 .. 4925060

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTTCATCTCATTGTTCTCATTTCCCAAGTCCATTCGACTGTTGGTACGATTGTGCTTTACATCTGCATCAAGTTGTATCAGCAGGATGTGAATCTTATGCAGGGGGATGTGACATTAATTATCTCATTATCGGGAGGAAATAGCTATGCTTGTCCAGAAAATGCAGGCGGGGCTGGGACTTTAGATGATGCAGTTCCTCGAAGCCTTATTGTTAGCAATCATAACAAGTCAACAGATACAGAATCACTTCTTATGGAGTTTCCTTATCAGCCTCTTTGGACAGATGTTTATATTCAAAATAAGGCGAGTGCGACTGTCCCATTGCTTTGGAGTCGTGTCCAGGTGTATGGGGCCTTACGCGTGACTGTAAAAATGTTCTTGATGTGGAATTCCAAGAAGCTCATTGATGATGGAGGGGAAGAAGCTGTTGAGACATCCTTACTCGAGGCTAGCAACTTGGTGGTTCTCAGGGTAAGTTACTTACTATCTCTTTGCATTATGTGGAGGATCATCTGCGTACGCTCTAATGCAAATCTGGGAGTTCATGGACAAGGTTTATTGAACTTATCAGGACCTGGAGATTGGATTCAAGCACAACGTCTGCCTCAATGTCTAATCTTCTGTTTACACATATGTCATGAACTGTTATTCGTTCATTCTGAAAATTTATTAGCAATTTTGGTCTTGCGAACACTAGCTCTTGGTGAGACTGCCATTCTTTCAAGTGTTGGGGGAAATGGTAGTTCCATCGGCAGTGGTGGAGGTGGTGGTGGAAGGATTCATTTTCATTGGTCAGATATTCCCACTGGAGATGTGTATCAGCCCATTGCAAGTGTGGGCGGAAGCATCCTTGCAGAGTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

31.21

Weight (kDa)

5.65

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47020
fragaria_vesca	FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880
malus_domestica	MD06G1042800.v1.1
prunus_persica	Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1
pyrus_communis	pycom06g03590 pycom10g04700
rosa_chinensis	RchiOBHm_Chr7g0207941
rosa_laevigata	RLG00000003271
rosa_multiflora	Rmu_co8348491.1_g000001 Rmu_sc0000905.1_g000016
rosa_roxburghii	Rroxscaffold_3G00250990
rosa_rugosa	Rorug07G0100300 Rorug07G0100300 Rorug07G0100400
rosa_samantha	Rh7AG235900 Rh7BG229600 Rh7CG249200 Rh7DG240000
rosa_wichuraiana	Rw0G001270 Rw0G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	363
AciI	CCGC	2 cut(s)	171, 843
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	391, 667
AfaI	GTAC	2 cut(s)	49, 522
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	299, 565, 593, 726
AjnI	CCWGG	2 cut(s)	342, 577
AluBI	AGCT	4 cut(s)	147, 403, 428, 701
AluI	AGCT	4 cut(s)	147, 403, 428, 701
Alw26I	GTCTC	2 cut(s)	428, 704
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	2 cut(s)	391, 667
AseI	ATTAAT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	354, 575
AsuHPI	GGTGA	1 cut(s)	719
AsuNHI	GCTAGC	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	575
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BccI	CCATC	2 cut(s)	407, 758
BciT130I	CCWGG	2 cut(s)	344, 579
BcoDI	GTCTC	2 cut(s)	428, 704
BfaI	CTAG	2 cut(s)	453, 698
Bme1390I	CCNGG	2 cut(s)	344, 579
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	354, 575
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	2 cut(s)	344, 579
BmsI	GCATC	3 cut(s)	78, 181, 858
BmtI	GCTAGC	1 cut(s)	456
BpmI	CTGGAG	2 cut(s)	600, 831
BsaBI	GATNNNNATC	2 cut(s)	93, 819
Bse1I	ACTGG	1 cut(s)	814
Bse3DI	GCAATG	2 cut(s)	323, 828
Bse8I	GATNNNNATC	2 cut(s)	93, 819
BseBI	CCWGG	2 cut(s)	344, 579
BseGI	GGATG	4 cut(s)	94, 115, 437, 849
BseJI	GATNNNNATC	2 cut(s)	93, 819
BseMI	GCAATG	2 cut(s)	323, 828
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	1 cut(s)	814
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	446
BsiWI	CGTACG	1 cut(s)	520
BslFI	GGGAC	2 cut(s)	193, 305
BsmAI	GTCTC	2 cut(s)	428, 704
BsmFI	GGGAC	2 cut(s)	193, 305
BsnI	GGCC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	510
BspACI	CCGC	2 cut(s)	171, 843
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	483
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	518
BsrDI	GCAATG	2 cut(s)	323, 828
BsrI	ACTGG	1 cut(s)	814
BssMI	GATC	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	344, 579
Bst4CI	ACNGT	4 cut(s)	43, 319, 370, 648
BstC8I	GCNNGC	2 cut(s)	169, 454
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	4 cut(s)	94, 115, 437, 849
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	1 cut(s)	513
BstMAI	GTCTC	2 cut(s)	428, 704
BstMBI	GATC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	344, 579
BstSCI	CCNGG	2 cut(s)	342, 577
BstUI	CGCG	1 cut(s)	363
BstXI	CCANNNNNNTGG	2 cut(s)	330, 350
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	4 cut(s)	94, 115, 437, 849
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	2 cut(s)	763, 807
Cac8I	GCNNGC	2 cut(s)	169, 454
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	2 cut(s)	354, 575
Csp6I	GTAC	2 cut(s)	48, 521
CviAII	CATG	2 cut(s)	548, 641
CviQI	GTAC	2 cut(s)	48, 521
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	1 cut(s)	512
DpnII	GATC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	354, 575
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	342, 577
FaeI	CATG	2 cut(s)	551, 644
FaqI	GGGAC	2 cut(s)	193, 305
FatI	CATG	2 cut(s)	547, 640
FauI	CCCGC	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	635
FokI	GGATG	4 cut(s)	101, 122, 424, 836
FspBI	CTAG	2 cut(s)	453, 698
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	2 cut(s)	600, 831
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	551, 644
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	5 cut(s)	94, 245, 334, 589, 781
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	2 cut(s)	234, 629
Hpy188I	TCNGA	2 cut(s)	664, 799
Hpy188III	TCNNGA	5 cut(s)	135, 158, 382, 573, 641
Hpy8I	GTNNAC	2 cut(s)	234, 629
HpyAV	CCTTC	1 cut(s)	771
HpyCH4III	ACNGT	4 cut(s)	43, 319, 370, 648
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	8 cut(s)	69, 103, 167, 194, 498, 533, 833, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	2 cut(s)	551, 644
Kzo9I	GATC	1 cut(s)	510
LweI	GCATC	3 cut(s)	78, 181, 858
MaeI	CTAG	2 cut(s)	453, 698
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	112, 364, 479
MalI	GATC	1 cut(s)	512
MboI	GATC	1 cut(s)	510
MboII	GAAGA	2 cut(s)	434, 613
MluCI	AATT	4 cut(s)	120, 391, 667, 678
MluI	ACGCGT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	8 cut(s)	131, 210, 285, 410, 442, 501, 618, 758
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	344, 579
MvaI	CCWGG	2 cut(s)	344, 579
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	1 cut(s)	510
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	551, 644
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	112, 364
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	94, 245, 589, 781
Pfl23II	CGTACG	1 cut(s)	520
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	575
PshBI	ATTAAT	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	342, 577
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	342, 577
PspLI	CGTACG	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	354, 575
PspPPI	RGGWCCY	1 cut(s)	575
PspXI	VCTCGAGB	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	49, 522
RsaNI	GTAC	2 cut(s)	48, 521
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	510
Sau96I	GGNCC	2 cut(s)	354, 575
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	344, 579
SetI	ASST	9 cut(s)	149, 348, 405, 430, 559, 580, 604, 703, 769
SfaNI	GCATC	3 cut(s)	78, 181, 858
Sfr274I	CTCGAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	120, 391, 667, 678
SsiI	CCGC	2 cut(s)	171, 843
SspMI	CTAG	2 cut(s)	453, 698
StyD4I	CCNGG	2 cut(s)	342, 577
TaaI	ACNGT	4 cut(s)	43, 319, 370, 648
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	3 cut(s)	38, 202, 447
TasI	AATT	4 cut(s)	120, 391, 667, 678
TfiI	GAWTC	4 cut(s)	94, 245, 589, 781
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	763, 814
TseFI	GTSAC	2 cut(s)	112, 364
Tsp45I	GTSAC	2 cut(s)	112, 364
TspDTI	ATGAA	5 cut(s)	536, 647, 657, 773, 779
TspRI	CASTG	2 cut(s)	763, 814
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	2 cut(s)	391, 667
XcmI	CCANNNNNNNNNTGG	2 cut(s)	41, 835
XhoI	CTCGAG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	453, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.