Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

7958281 .. 7962678

Gene Structure 4398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGACGAGGCCTCATCGTCGACGCCCAAGAGCGACGCAAAGCAGCTGAAAACGACGACGGCCGGAGGGTTGTTCTCACTGTTAAACGACGACCTCCTCCACGACATCCTCGCCCGCCTTCCGGCTCCTTCCTTCGCCTCAGCCGCGTGCGTCAGCAAATCCTGGAGCCGAACGTGCACTCTCATCCTCTCTCGCCCCAAACTCGCCTCCGCCCTCTCTCTCAATCCCAGCCTCCAGGTTGCTTGGGAAGAGGTCACACAGAAGGTTCTGGCCGAGCCGATCAGGCCTCATTTCATCATAGCTAATGTCGGAAGTGGGTTTCGCTTGGTTGATGTTAACAAGCTTGTAAAGGAGAGATTTGGGTCCAGAGCTCCGTTTGTTGTTTCTACTGCAAATGGGATTCTTGGAAGAGATGTTGTTACCTGTGAAATCAAAGAGTGGGACAGTGTTTCTAGTGATGTGAGTGATGATGATGCCTCCGTACCTGCAGAGGATGGGAGCTACGGCATTGTTTTGACTGTCGGCTTTGTGCCGGGTTTGAAAGTTGATGCTATCCCGCTGTTATCGACAAGTGTAAAGGAATGTCAAGAGGTCTTTATCGATAAGTTTGTCATGGATATTAAGGATTACACAGCTTCTGTTTCAGATTGCACAGCCCCAGTAGGGATTATAATGTTTGGAGATGGGTATACTAATATGAGACCAGTAGTTGATGCATTGGATTATGTTATGCCCGAGGAAACTGTCATCGTGGGTGACGAGAAGGGTCGGTTTTTGTATAGAAGTGAGAATGAGTCTAGAAATGTCTGTGGGACTGCAACATCCTTTTCAGTTGCTGTTGCTCTTATATTTGCCAGGGACAGACAAAACTCCTGTGGGGATATTCAATTCCAAATTGCATTGTCAGAAGGTGTGTCAACAGTAGGTCCCAAACACAAGGCTGTCTCTGTTAGAGCTAGCGCCTCTGATTCTACTTGGCTCACTGCTAGAAGAGAAGGACACCGCGAGATTCTTGATGGTCAACGAATTCTGAATGATATTAACGATGAGTTAGAAAATCACACGGATTCTTCTGATCTGTACATTGGGGTTAAAAAACGAAGAAGTATCTCCACAGGGCCAAAGACGCGTAGGCTAGTTACTTCCCTGGACTTCCATGGAGTTATAGGTGGAGACGAATCGTACCTTTATGTCAATGATGTTGGCATCAAAACTGGTGATTACTTCCATTTCTATCGCCCAGATCCCCAAACTGCCTTATCCTCGTGTACAAATCTCTCTGTAAGCCTGAAAAACTTGAAGATAGATGAAAATTCAAAAGATTGCTGTAACCTAGGTGAAGTATTTGGGGGTTTCATCTTCGCTTGTTGTGGCCGCGGTGAGTCATTCTTTGAACGTGTGAATGTGGATAGCTCGCCTTTTGTTGAAAACTTCCCTCGGGCTCCATTGGGAGGAATATTTTGTGGGGGCGAAATTGGACGTGGCTCTTCAATGTTTACCAGGGGAGCTCAGAAGGATTGCAAATGCAATCTGCATGTCTATAGTACTATTTATCTTGTGTTGTCATGTACTCCAGCAGCATTAGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

530

Amino Acids

57.57

Weight (kDa)

5.29

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 60	9.6e-07	F-box domain
FIST_C	PF10442	403 - 494	1.2e-06	FIST C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	20, 689
AccII	CGCG	4 cut(s)	146, 1005, 1129, 1377
AciI	CCGC	7 cut(s)	115, 144, 210, 557, 1003, 1375, 1377
AclWI	GGATC	1 cut(s)	1238
AcoI	YGGCCR	3 cut(s)	60, 270, 1372
AcsI	RAATTY	2 cut(s)	1026, 1312
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	6 cut(s)	483, 1082, 1184, 1270, 1546, 1570
AfiI	CCNNNNNNNGG	3 cut(s)	121, 663, 1451
AflIII	ACRYGT	2 cut(s)	1127, 1396
AgsI	TTSAA	7 cut(s)	541, 887, 1300, 1317, 1394, 1427, 1491
AjiI	CACGTC	1 cut(s)	1481
AjnI	CCWGG	5 cut(s)	161, 234, 854, 1146, 1499
AluBI	AGCT	9 cut(s)	46, 302, 343, 371, 501, 635, 956, 1413, 1508
AluI	AGCT	9 cut(s)	46, 302, 343, 371, 501, 635, 956, 1413, 1508
Alw21I	GWGCWC	3 cut(s)	179, 373, 1510
Alw26I	GTCTC	3 cut(s)	694, 949, 1167
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	1238
AlwNI	CAGNNNCTG	2 cut(s)	638, 836
Ama87I	CYCGRG	2 cut(s)	734, 1437
AoxI	GGCC	6 cut(s)	9, 60, 270, 284, 1118, 1372
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	43, 1577
ApoI	RAATTY	2 cut(s)	1026, 1312
AspA2I	CCTAGG	1 cut(s)	1333
AspLEI	GCGC	1 cut(s)	962
AspS9I	GGNCC	3 cut(s)	363, 926, 1118
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	767, 1229, 1349, 1391
AsuNHI	GCTAGC	1 cut(s)	956
AvaI	CYCGRG	2 cut(s)	734, 1437
AvaII	GGWCC	2 cut(s)	363, 926
AvrII	CCTAGG	1 cut(s)	1333
BaeGI	GKGCMC	1 cut(s)	179
BanII	GRGCYC	3 cut(s)	373, 1444, 1510
BauI	CACGAG	1 cut(s)	1264
Bbv12I	GWGCWC	3 cut(s)	179, 373, 1510
BbvCI	CCTCAGC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	55, 1589
BccI	CCATC	3 cut(s)	488, 677, 1010
BceAI	ACGGC	2 cut(s)	75, 520
BciT130I	CCWGG	5 cut(s)	163, 236, 856, 1148, 1501
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	3 cut(s)	694, 949, 1167
BfaI	CTAG	6 cut(s)	453, 798, 957, 987, 1136, 1334
BfmI	CTRYAG	2 cut(s)	486, 1540
BfoI	RGCGCY	1 cut(s)	963
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	44, 144, 1375, 1578
BlnI	CCTAGG	1 cut(s)	1333
BlsI	GCNGC	4 cut(s)	45, 145, 1376, 1579
BmcAI	AGTACT	1 cut(s)	1546
Bme1390I	CCNGG	6 cut(s)	163, 236, 534, 856, 1148, 1501
Bme18I	GGWCC	2 cut(s)	363, 926
BmeT110I	CYCGRG	2 cut(s)	734, 1437
BmgBI	CACGTC	1 cut(s)	1481
BmgT120I	GGNCC	3 cut(s)	363, 926, 1118
BmiI	GGNNCC	5 cut(s)	126, 167, 364, 928, 1443
BmrFI	CCNGG	6 cut(s)	163, 236, 534, 856, 1148, 1501
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	4 cut(s)	463, 538, 703, 1215
BmtI	GCTAGC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	653
BpmI	CTGGAG	3 cut(s)	184, 218, 1557
Bpu10I	CCTNAGC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	8 cut(s)	735, 855, 1146, 1156, 1333, 1375, 1436, 1500
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 663, 1451
Bse1I	ACTGG	3 cut(s)	659, 704, 1219
BseBI	CCWGG	5 cut(s)	163, 236, 856, 1148, 1501
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	8 cut(s)	735, 855, 1146, 1156, 1333, 1375, 1436, 1500
BseGI	GGATG	4 cut(s)	105, 183, 499, 821
BseLI	CCNNNNNNNGG	3 cut(s)	121, 663, 1451
BseMII	CTCAG	2 cut(s)	153, 1523
BseNI	ACTGG	3 cut(s)	659, 704, 1219
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	55, 1589
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	4 cut(s)	146, 1005, 1129, 1377
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	6 cut(s)	11, 62, 272, 286, 1120, 1374
BshVI	ATCGAT	1 cut(s)	600
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	3 cut(s)	179, 373, 1510
BsiHKCI	CYCGRG	2 cut(s)	734, 1437
BsiSI	CCGG	3 cut(s)	63, 122, 533
BslFI	GGGAC	4 cut(s)	455, 826, 872, 912
BslI	CCNNNNNNNGG	3 cut(s)	121, 663, 1451
BsmAI	GTCTC	3 cut(s)	694, 949, 1167
BsmBI	CGTCTC	1 cut(s)	1167
BsmFI	GGGAC	4 cut(s)	455, 826, 872, 912
BsnI	GGCC	6 cut(s)	11, 62, 272, 286, 1120, 1374
Bso31I	GGTCTC	1 cut(s)	694
BsoBI	CYCGRG	2 cut(s)	734, 1437
Bsp1286I	GDGCHC	4 cut(s)	179, 373, 1444, 1510
Bsp1407I	TGTACA	2 cut(s)	1080, 1268
Bsp143I	GATC	4 cut(s)	279, 1075, 1243, 1585
Bsp19I	CCATGG	1 cut(s)	1156
BspACI	CCGC	7 cut(s)	115, 144, 210, 557, 1003, 1375, 1377
BspANI	GGCC	6 cut(s)	11, 62, 272, 286, 1120, 1374
BspCNI	CTCAG	2 cut(s)	152, 1522
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	4 cut(s)	146, 1005, 1129, 1377
BspLI	GGNNCC	5 cut(s)	126, 167, 364, 928, 1443
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	1 cut(s)	1238
BspQI	GCTCTTC	1 cut(s)	1492
BspTNI	GGTCTC	1 cut(s)	694
BsrGI	TGTACA	2 cut(s)	1080, 1268
BsrI	ACTGG	3 cut(s)	659, 704, 1219
BssECI	CCNNGG	8 cut(s)	735, 855, 1146, 1156, 1333, 1375, 1436, 1500
BssMI	GATC	4 cut(s)	279, 1075, 1243, 1585
BssNAI	GTATAC	1 cut(s)	690
BssNI	GRCGYC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	1264
BssT1I	CCWWGG	2 cut(s)	1156, 1333
Bst1107I	GTATAC	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	1264
Bst2UI	CCWGG	5 cut(s)	163, 236, 856, 1148, 1501
Bst4CI	ACNGT	5 cut(s)	81, 446, 520, 745, 922
Bst6I	CTCTTC	4 cut(s)	243, 403, 985, 1492
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	2 cut(s)	1080, 1268
BstC8I	GCNNGC	4 cut(s)	115, 148, 958, 1415
BstDEI	CTNAG	2 cut(s)	139, 1509
BstDSI	CCRYGG	2 cut(s)	1156, 1375
BstF5I	GGATG	4 cut(s)	105, 183, 499, 821
BstFNI	CGCG	4 cut(s)	146, 1005, 1129, 1377
BstH2I	RGCGCY	1 cut(s)	963
BstHHI	GCGC	1 cut(s)	962
BstKTI	GATC	4 cut(s)	282, 1078, 1246, 1588
BstMAI	GTCTC	3 cut(s)	694, 949, 1167
BstMBI	GATC	4 cut(s)	279, 1075, 1243, 1585
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 174, 283, 1126
BstNI	CCWGG	5 cut(s)	163, 236, 856, 1148, 1501
BstNSI	RCATGY	1 cut(s)	1538
BstSCI	CCNGG	6 cut(s)	161, 234, 532, 854, 1146, 1499
BstSFI	CTRYAG	2 cut(s)	486, 1540
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	4 cut(s)	146, 1005, 1129, 1377
BstV1I	GCAGC	2 cut(s)	55, 1589
BstX2I	RGATCY	1 cut(s)	1243
BstYI	RGATCY	1 cut(s)	1243
BstZ17I	GTATAC	1 cut(s)	690
BstZI	CGGCCG	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	6 cut(s)	11, 62, 272, 286, 1120, 1374
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	2 cut(s)	1156, 1375
BtrI	CACGTC	1 cut(s)	1481
BtsCI	GGATG	4 cut(s)	105, 183, 499, 821
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	3 cut(s)	77, 451, 981
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	115, 148, 958, 1415
CaiI	CAGNNNCTG	2 cut(s)	638, 836
CfoI	GCGC	1 cut(s)	962
Cfr13I	GGNCC	3 cut(s)	363, 926, 1118
Cfr42I	CCGCGG	1 cut(s)	1378
ClaI	ATCGAT	1 cut(s)	600
CseI	GACGC	4 cut(s)	31, 44, 139, 1135
Csp6I	GTAC	6 cut(s)	482, 1081, 1183, 1269, 1545, 1569
CviAII	CATG	4 cut(s)	613, 1157, 1535, 1566
CviQI	GTAC	6 cut(s)	482, 1081, 1183, 1269, 1545, 1569
DdeI	CTNAG	2 cut(s)	139, 1509
DpnI	GATC	4 cut(s)	281, 1077, 1245, 1587
DpnII	GATC	4 cut(s)	279, 1075, 1243, 1585
EaeI	YGGCCR	3 cut(s)	60, 270, 1372
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	4 cut(s)	243, 403, 985, 1492
EarI	CTCTTC	4 cut(s)	243, 403, 985, 1492
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	2 cut(s)	371, 1508
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	1156, 1333
Eco147I	AGGCCT	2 cut(s)	11, 286
Eco24I	GRGCYC	3 cut(s)	373, 1444, 1510
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	2 cut(s)	363, 926
Eco52I	CGGCCG	1 cut(s)	60
Eco53kI	GAGCTC	2 cut(s)	371, 1508
Eco88I	CYCGRG	2 cut(s)	734, 1437
EcoICRI	GAGCTC	2 cut(s)	371, 1508
EcoO109I	RGGNCCY	1 cut(s)	926
EcoRI	GAATTC	1 cut(s)	1026
EcoRII	CCWGG	5 cut(s)	161, 234, 854, 1146, 1499
EcoT14I	CCWWGG	2 cut(s)	1156, 1333
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	3 cut(s)	373, 1444, 1510
ErhI	CCWWGG	2 cut(s)	1156, 1333
Esp3I	CGTCTC	1 cut(s)	1167
FaeI	CATG	4 cut(s)	616, 1160, 1538, 1569
FaqI	GGGAC	4 cut(s)	455, 826, 872, 912
FatI	CATG	4 cut(s)	612, 1156, 1534, 1565
FauI	CCCGC	2 cut(s)	122, 564
FblI	GTMKAC	2 cut(s)	20, 689
Fnu4HI	GCNGC	4 cut(s)	44, 144, 1375, 1578
FokI	GGATG	4 cut(s)	92, 170, 506, 808
FriOI	GRGCYC	3 cut(s)	373, 1444, 1510
Fsp4HI	GCNGC	4 cut(s)	44, 144, 1375, 1578
FspBI	CTAG	6 cut(s)	453, 798, 957, 987, 1136, 1334
GlaI	GCGC	1 cut(s)	961
GluI	GCNGC	4 cut(s)	44, 144, 1375, 1578
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	3 cut(s)	184, 218, 1557
HaeII	RGCGCY	1 cut(s)	963
HaeIII	GGCC	6 cut(s)	11, 62, 272, 286, 1120, 1374
HapII	CCGG	3 cut(s)	63, 122, 533
HgaI	GACGC	4 cut(s)	31, 44, 139, 1135
HhaI	GCGC	1 cut(s)	962
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	616, 1160, 1538, 1569
Hin6I	GCGC	1 cut(s)	960
HinP1I	GCGC	1 cut(s)	960
HincII	GTYRAC	4 cut(s)	21, 337, 918, 1022
HindII	GTYRAC	4 cut(s)	21, 337, 918, 1022
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	7 cut(s)	400, 794, 968, 1009, 1067, 1178, 1382
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	3 cut(s)	63, 122, 533
HphI	GGTGA	4 cut(s)	767, 1229, 1349, 1391
Hpy166II	GTNNAC	8 cut(s)	21, 177, 337, 690, 918, 1022, 1269, 1497
Hpy188I	TCNGA	7 cut(s)	311, 646, 907, 967, 1032, 1075, 1512
Hpy188III	TCNNGA	4 cut(s)	366, 587, 798, 1013
Hpy8I	GTNNAC	8 cut(s)	21, 177, 337, 690, 918, 1022, 1269, 1497
Hpy99I	CGWCG	6 cut(s)	22, 25, 38, 58, 61, 92
HpyAV	CCTTC	8 cut(s)	128, 138, 142, 256, 757, 902, 989, 1507
HpyCH4III	ACNGT	5 cut(s)	81, 446, 520, 745, 922
HpyCH4IV	ACGT	3 cut(s)	173, 1396, 1480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 174, 283, 1126
HpyF3I	CTNAG	2 cut(s)	139, 1509
HpySE526I	ACGT	3 cut(s)	173, 1396, 1480
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	616, 1160, 1538, 1569
HspAI	GCGC	1 cut(s)	960
KspAI	GTTAAC	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	1378
Kzo9I	GATC	4 cut(s)	279, 1075, 1243, 1585
LguI	GCTCTTC	1 cut(s)	1492
LmnI	GCTCC	6 cut(s)	130, 165, 376, 498, 1447, 1505
Lsp1109I	GCAGC	2 cut(s)	55, 1589
LweI	GCATC	4 cut(s)	463, 538, 703, 1215
MaeI	CTAG	6 cut(s)	453, 798, 957, 987, 1136, 1334
MaeII	ACGT	3 cut(s)	173, 1396, 1480
MaeIII	GTNAC	5 cut(s)	253, 418, 755, 1138, 1328
MalI	GATC	4 cut(s)	281, 1077, 1245, 1587
MboI	GATC	4 cut(s)	279, 1075, 1243, 1585
MboII	GAAGA	8 cut(s)	260, 420, 1002, 1062, 1113, 1312, 1351, 1479
MflI	RGATCY	1 cut(s)	1243
MhlI	GDGCHC	4 cut(s)	179, 373, 1444, 1510
MluCI	AATT	5 cut(s)	887, 894, 1026, 1312, 1473
MluI	ACGCGT	1 cut(s)	1127
MlyI	GAGTC	2 cut(s)	803, 1391
MmeI	TCCRAC	1 cut(s)	289
Mph1103I	ATGCAT	1 cut(s)	718
MseI	TTAA	5 cut(s)	83, 336, 621, 1041, 1092
MspA1I	CMGCKG	3 cut(s)	46, 559, 1377
MspI	CCGG	3 cut(s)	63, 122, 533
MspR9I	CCNGG	6 cut(s)	163, 236, 534, 856, 1148, 1501
MvaI	CCWGG	5 cut(s)	163, 236, 856, 1148, 1501
MvnI	CGCG	4 cut(s)	146, 1005, 1129, 1377
MwoI	GCNNNNNNNGC	4 cut(s)	143, 174, 283, 1126
NciI	CCSGG	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	1156
NdeII	GATC	4 cut(s)	279, 1075, 1243, 1585
NheI	GCTAGC	1 cut(s)	956
NlaIII	CATG	4 cut(s)	616, 1160, 1538, 1569
NlaIV	GGNNCC	5 cut(s)	126, 167, 364, 928, 1443
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	253, 755
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	1 cut(s)	1538
PceI	AGGCCT	2 cut(s)	11, 286
PciSI	GCTCTTC	1 cut(s)	1492
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	5 cut(s)	400, 968, 1009, 1067, 1178
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	45, 145, 1376, 1579
PleI	GAGTC	2 cut(s)	802, 1390
PpsI	GAGTC	2 cut(s)	802, 1390
PpuMI	RGGWCCY	1 cut(s)	926
PsiI	TTATAA	1 cut(s)	671
Psp124BI	GAGCTC	2 cut(s)	373, 1510
Psp5II	RGGWCCY	1 cut(s)	926
Psp6I	CCWGG	5 cut(s)	161, 234, 854, 1146, 1499
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	5 cut(s)	161, 234, 854, 1146, 1499
PspN4I	GGNNCC	5 cut(s)	126, 167, 364, 928, 1443
PspPI	GGNCC	3 cut(s)	363, 926, 1118
PspPPI	RGGWCCY	1 cut(s)	926
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	2 cut(s)	638, 836
PsuI	RGATCY	1 cut(s)	1243
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	6 cut(s)	483, 1082, 1184, 1270, 1546, 1570
RsaNI	GTAC	6 cut(s)	482, 1081, 1183, 1269, 1545, 1569
SacI	GAGCTC	2 cut(s)	373, 1510
SacII	CCGCGG	1 cut(s)	1378
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	1492
SaqAI	TTAA	5 cut(s)	83, 336, 621, 1041, 1092
SatI	GCNGC	4 cut(s)	44, 144, 1375, 1578
Sau3AI	GATC	4 cut(s)	279, 1075, 1243, 1585
Sau96I	GGNCC	3 cut(s)	363, 926, 1118
ScaI	AGTACT	1 cut(s)	1546
SchI	GAGTC	2 cut(s)	803, 1391
ScrFI	CCNGG	6 cut(s)	163, 236, 534, 856, 1148, 1501
SduI	GDGCHC	4 cut(s)	179, 373, 1444, 1510
SfaNI	GCATC	4 cut(s)	463, 538, 703, 1215
SfcI	CTRYAG	2 cut(s)	486, 1540
Sfr303I	CCGCGG	1 cut(s)	1378
SgrBI	CCGCGG	1 cut(s)	1378
SgrDI	CGTCGACG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	363, 926
Sse9I	AATT	5 cut(s)	887, 894, 1026, 1312, 1473
SseBI	AGGCCT	2 cut(s)	11, 286
SsiI	CCGC	7 cut(s)	115, 144, 210, 557, 1003, 1375, 1377
SspI	AATATT	1 cut(s)	1458
SspMI	CTAG	6 cut(s)	453, 798, 957, 987, 1136, 1334
SstI	GAGCTC	2 cut(s)	373, 1510
StuI	AGGCCT	2 cut(s)	11, 286
StyD4I	CCNGG	6 cut(s)	161, 234, 532, 854, 1146, 1499
StyI	CCWWGG	2 cut(s)	1156, 1333
TaaI	ACNGT	5 cut(s)	81, 446, 520, 745, 922
TaiI	ACGT	3 cut(s)	176, 1399, 1483
TaqI	TCGA	3 cut(s)	20, 566, 600
TasI	AATT	5 cut(s)	887, 894, 1026, 1312, 1473
TatI	WGTACW	4 cut(s)	1080, 1268, 1544, 1568
TauI	GCSGC	2 cut(s)	146, 1377
TfiI	GAWTC	5 cut(s)	400, 968, 1009, 1067, 1178
Tru1I	TTAA	5 cut(s)	83, 336, 621, 1041, 1092
Tru9I	TTAA	5 cut(s)	83, 336, 621, 1041, 1092
TscAI	CASTG	3 cut(s)	84, 451, 988
TseFI	GTSAC	2 cut(s)	253, 755
TseI	GCWGC	2 cut(s)	43, 1577
Tsp45I	GTSAC	2 cut(s)	253, 755
TspDTI	ATGAA	3 cut(s)	283, 1323, 1345
TspGWI	ACGGA	3 cut(s)	363, 469, 1079
TspRI	CASTG	3 cut(s)	84, 451, 988
VneI	GTGCAC	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	363, 926
XapI	RAATTY	2 cut(s)	1026, 1312
XbaI	TCTAGA	1 cut(s)	797
XceI	RCATGY	1 cut(s)	1538
XmaJI	CCTAGG	1 cut(s)	1333
XmiI	GTMKAC	2 cut(s)	20, 689
XspI	CTAG	6 cut(s)	453, 798, 957, 987, 1136, 1334
ZrmI	AGTACT	1 cut(s)	1546
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.