Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379053.1

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Reverse (-)

400 .. 864

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379053.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtatgtgtttcttccgaatgaaagagatgggttgccagctttagttgagagattttcttccgagtctgggttcttagatcagcatcttccccacaaaacagttgaagttggtgcctttaaaatgccaaagttcacgtattcttgtagatttgaagcttccaaagttctgaaaactttagggttagagttgccttttgttcctggaggtttgacagagatggtggactcacctatgagtgatagcctatatgtttcccacatacaacatggatcattcattgatgttaatgaggacggtacagaagctgctgctgttacggttgctgttcaagcgggttcaacttggagtcaggagaagaggatagactttgtggcagatcatcccttcctttttcttatcagagaagaaaccactggatcggtgctgttcattgggcaagtcctcaatccaattgaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

4.74

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	280, 427
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	5 cut(s)	107, 155, 332, 342, 458
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	41, 158, 308
AluI	AGCT	3 cut(s)	41, 158, 308
AlwI	GGATC	2 cut(s)	280, 427
AlwNI	CAGNNNCTG	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	308, 311
AsuHPI	GGTGA	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	295, 298
BccI	CCATC	2 cut(s)	23, 214
BciT130I	CCWGG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	309, 312
BlsI	GCNGC	2 cut(s)	310, 313
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	295, 298
BshNI	GGYRCC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	79, 272, 379, 419
BspACI	CCGC	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	280, 427
BspT107I	GGYRCC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	4 cut(s)	79, 272, 379, 419
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	103, 299, 322
Bst6I	CTCTTC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	4 cut(s)	82, 275, 382, 422
BstMBI	GATC	4 cut(s)	79, 272, 379, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	295, 298
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	4 cut(s)	41, 158, 246, 308
CviKI_1	RGCY	4 cut(s)	41, 158, 246, 308
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	81, 274, 381, 421
DpnII	GATC	4 cut(s)	79, 272, 379, 419
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	272
FaiI	YATR	6 cut(s)	6, 236, 250, 252, 263, 270
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	309, 312
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	309, 312
GluI	GCNGC	2 cut(s)	309, 312
GsuI	CTGGAG	1 cut(s)	225
Hin1II	CATG	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	3 cut(s)	65, 227, 349
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	135, 226
Hpy188I	TCNGA	4 cut(s)	18, 64, 171, 404
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	135, 226
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	3 cut(s)	103, 299, 322
HpyCH4IV	ACGT	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	79, 272, 379, 419
LpnPI	CCDG	6 cut(s)	51, 54, 189, 216, 338, 402
Lsp1109I	GCAGC	2 cut(s)	295, 298
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	4 cut(s)	81, 274, 381, 421
MboI	GATC	4 cut(s)	79, 272, 379, 419
MboII	GAAGA	5 cut(s)	5, 51, 80, 370, 419
MfeI	CAATTG	1 cut(s)	453
MluCI	AATT	1 cut(s)	453
MlyI	GAGTC	3 cut(s)	74, 221, 358
MnlI	CCTC	4 cut(s)	200, 286, 354, 455
MseI	TTAA	2 cut(s)	120, 288
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	4 cut(s)	79, 272, 379, 419
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	310, 313
PleI	GAGTC	3 cut(s)	73, 221, 357
PpsI	GAGTC	3 cut(s)	73, 221, 357
Ppu21I	YACGTR	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	120, 288
SatI	GCNGC	2 cut(s)	309, 312
Sau3AI	GATC	4 cut(s)	79, 272, 379, 419
SchI	GAGTC	3 cut(s)	74, 221, 358
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	6 cut(s)	43, 140, 160, 211, 235, 310
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	103, 299, 322
TaiI	ACGT	1 cut(s)	140
TasI	AATT	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	120, 288
Tru9I	TTAA	2 cut(s)	120, 288
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	2 cut(s)	308, 311
TspDTI	ATGAA	3 cut(s)	36, 268, 421
TspRI	CASTG	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.