Rorug04G0417800

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000163
Physical Location & Seq
Forward (+)
57877187 .. 57877668
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0417800.1

Sequence Viewer

Length: 393 bp
ATGCAAGTATGGACACTCCTCATGGCTCGTAGCAGAAGGTTTCATGTGAAGATGAATAAAGTTGATTTTGTTGTTGGCTTGGATAAAGGAGAACGTCAGAAAGTTGAGTGGTCGAGGCCTTCTTCTTCTCCATATATAATTATATTAGCTGCTGCTGCTGCTGCTGCACATGTCACATGGTTATTATTCTTCAAAACAGAGGCATGCACATTGAGAACAGATCCAGATTCTCACATGGAGATGGTCGATGTGATTACTTGTTTCTTACCACCTGGTGAATCCAATTTAATTCTGATAAAATCAAAATCTAATTGGGGTCTCAGACTCTCAGCCATACTCCCTTATGTAGGTGGCCCAAAGCTTATGGGGCTTAAGAGAACTCAACTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

9.8

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 347
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 149, 361
AluI AGCT 2 cut(s) 149, 361
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 116, 352
ApeKI GCWGC 6 cut(s) 149, 152, 155, 158, 161, 164
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 287
BbvI GCAGC 6 cut(s) 136, 139, 142, 145, 148, 151
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 323
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 6 cut(s) 150, 153, 156, 159, 162, 165
BlsI GCNGC 6 cut(s) 151, 154, 157, 160, 163, 166
Bme1390I CCNGG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 334, 342
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 6 cut(s) 136, 139, 142, 145, 148, 151
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 2 cut(s) 118, 354
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 323
BsnI GGCC 2 cut(s) 118, 354
Bso31I GGTCTC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 2 cut(s) 118, 354
BspCNI CTCAG 2 cut(s) 333, 341
BspPI GGATC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 323
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 320, 328
BstENI CCTNNNNNAGG 1 cut(s) 345
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 5 cut(s) 155, 158, 161, 164, 367
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 173, 207
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 6 cut(s) 136, 139, 142, 145, 148, 151
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 118, 354
Cac8I GCNNGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 353
CsiI ACCWGGT 1 cut(s) 271
CviAII CATG 6 cut(s) 22, 44, 170, 177, 204, 235
CviJI RGCY 8 cut(s) 26, 78, 118, 149, 332, 354, 361, 370
CviKI_1 RGCY 8 cut(s) 26, 78, 118, 149, 332, 354, 361, 370
DdeI CTNAG 2 cut(s) 320, 328
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DraIII CACNNNGTG 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 323
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 6 cut(s) 25, 47, 173, 180, 207, 238
FatI CATG 6 cut(s) 21, 43, 169, 176, 203, 234
Fnu4HI GCNGC 6 cut(s) 150, 153, 156, 159, 162, 165
Fsp4HI GCNGC 6 cut(s) 150, 153, 156, 159, 162, 165
GluI GCNGC 6 cut(s) 150, 153, 156, 159, 162, 165
HaeIII GGCC 2 cut(s) 118, 354
Hin1II CATG 6 cut(s) 25, 47, 173, 180, 207, 238
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 3 cut(s) 227, 278, 324
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 99, 294, 323
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 30, 129
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 4, 167, 207
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 158, 161, 164, 367
HpyF3I CTNAG 2 cut(s) 320, 328
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 6 cut(s) 25, 47, 173, 180, 207, 238
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 237, 258, 285
Lsp1109I GCAGC 6 cut(s) 136, 139, 142, 145, 148, 151
MabI ACCWGGT 1 cut(s) 271
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 4 cut(s) 61, 114, 117, 181
MflI RGATCY 1 cut(s) 220
MluCI AATT 5 cut(s) 138, 283, 288, 310, 388
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 3 cut(s) 29, 108, 193
MseI TTAA 2 cut(s) 287, 372
MslI CAYNNNNRTG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 5 cut(s) 155, 158, 161, 164, 367
NdeII GATC 1 cut(s) 220
NlaIII CATG 6 cut(s) 25, 47, 173, 180, 207, 238
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 2 cut(s) 173, 207
PaeI GCATGC 1 cut(s) 207
PceI AGGCCT 1 cut(s) 118
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 2 cut(s) 227, 278
PkrI GCNGC 6 cut(s) 151, 154, 157, 160, 163, 166
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PscI ACATGT 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspPI GGNCC 1 cut(s) 353
PsuI RGATCY 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 287, 372
SatI GCNGC 6 cut(s) 150, 153, 156, 159, 162, 165
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 273
SetI ASST 6 cut(s) 41, 97, 151, 274, 352, 363
SexAI ACCWGGT 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SphI GCATGC 1 cut(s) 207
Sse9I AATT 5 cut(s) 138, 283, 288, 310, 388
SseBI AGGCCT 1 cut(s) 118
StuI AGGCCT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 113, 246
TasI AATT 5 cut(s) 138, 283, 288, 310, 388
TfiI GAWTC 2 cut(s) 227, 278
Tru1I TTAA 2 cut(s) 287, 372
Tru9I TTAA 2 cut(s) 287, 372
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 6 cut(s) 149, 152, 155, 158, 161, 164
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 32, 68
Vha464I CTTAAG 1 cut(s) 371
XagI CCTNNNNNAGG 1 cut(s) 345
XceI RCATGY 2 cut(s) 173, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.