RchiOBHm_Chr5g0015511

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000163
Physical Location & Seq
Reverse (-)
10771245 .. 10771678
434 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29593

Sequence Viewer

Length: 345 bp
ATGTGCTTGCTTCATCCAGATGAAAGAGATGGGCTGCCATCTCTAGCTGAGAGAGTTTGTTCAGAATCCGGTTTTATAAATGGTCATCTGAAGAGTACAAACCTAGACTGGGTTGAAGTGGGTGAATTCTTGATTCCAAAGTTTAAGTTTTCTTCGGCGTTTGAAGCCTCGGCTGCAGCTGCTACTGTTTATGTAGATGACTGTGACTGTAAATGTAGTGATGATGATTATGAGCCTAAAAAAGAAGACTTTGTGGAGGATCACCCACTCATGGTTGTCATCAGGGAAGACAAGGCTGGAACACTGCTGTTTATGGGACATGTGCTTAATCCCCTTGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

114

Amino Acids

12.61

Weight (kDa)

4.48

Isoelectric Point (pI)

15.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 57 - 111 1.3e-06 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 3 cut(s) 109, 271, 338
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 2 cut(s) 116, 164
AluBI AGCT 2 cut(s) 47, 179
AluI AGCT 2 cut(s) 47, 179
AlwI GGATC 1 cut(s) 267
ApeKI GCWGC 4 cut(s) 34, 173, 176, 179
ApoI RAATTY 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 134, 254
BbsI GAAGAC 2 cut(s) 252, 294
BbvI GCAGC 4 cut(s) 21, 160, 166, 188
BccI CCATC 2 cut(s) 23, 46
BfaI CTAG 2 cut(s) 44, 104
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 4 cut(s) 35, 174, 177, 180
BlsI GCNGC 4 cut(s) 36, 175, 178, 181
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 252, 294
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 271, 338
Bse1I ACTGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 109, 271, 338
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 21, 160, 166, 188
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 109, 271, 338
BsmFI GGGAC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 259
Bst4CI ACNGT 3 cut(s) 187, 203, 209
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 8, 340
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 164, 173, 179
BstNSI RCATGY 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 4 cut(s) 21, 160, 166, 188
BstV2I GAAGAC 2 cut(s) 252, 294
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 8, 340
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 271, 320
CviJI RGCY 8 cut(s) 34, 47, 167, 173, 179, 235, 296, 342
CviKI_1 RGCY 8 cut(s) 34, 47, 167, 173, 179, 235, 296, 342
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 125
FaeI CATG 2 cut(s) 274, 323
FaiI YATR 6 cut(s) 77, 192, 231, 272, 314, 321
FaqI GGGAC 1 cut(s) 330
FatI CATG 2 cut(s) 270, 319
Fnu4HI GCNGC 4 cut(s) 35, 174, 177, 180
Fsp4HI GCNGC 4 cut(s) 35, 174, 177, 180
FspBI CTAG 2 cut(s) 44, 104
GluI GCNGC 4 cut(s) 35, 174, 177, 180
HapII CCGG 1 cut(s) 69
Hin1II CATG 2 cut(s) 274, 323
HinfI GANTC 2 cut(s) 65, 133
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 134, 254
Hpy188I TCNGA 2 cut(s) 64, 90
Hpy188III TCNNGA 2 cut(s) 17, 130
HpyCH4III ACNGT 3 cut(s) 187, 203, 209
HpyCH4V TGCA 2 cut(s) 176, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 173, 179
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 274, 323
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 6 cut(s) 30, 82, 94, 268, 282, 324
Lsp1109I GCAGC 4 cut(s) 21, 160, 166, 188
MaeI CTAG 2 cut(s) 44, 104
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 4 cut(s) 103, 144, 257, 299
MluCI AATT 1 cut(s) 125
MnlI CCTC 2 cut(s) 178, 250
MseI TTAA 2 cut(s) 144, 327
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 164, 173, 179
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 274, 323
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 323
PciI ACATGT 1 cut(s) 319
PfeI GAWTC 2 cut(s) 65, 133
PkrI GCNGC 4 cut(s) 36, 175, 178, 181
PscI ACATGT 1 cut(s) 319
PsiI TTATAA 1 cut(s) 77
PstI CTGCAG 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 144, 327
SatI GCNGC 4 cut(s) 35, 174, 177, 180
Sau3AI GATC 1 cut(s) 259
SetI ASST 3 cut(s) 49, 105, 181
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 1 cut(s) 125
SspMI CTAG 2 cut(s) 44, 104
TaaI ACNGT 3 cut(s) 187, 203, 209
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 2 cut(s) 65, 133
Tru1I TTAA 2 cut(s) 144, 327
Tru9I TTAA 2 cut(s) 144, 327
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 34, 173, 176, 179
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 309
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 323
XspI CTAG 2 cut(s) 44, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.