FvH4_3g23720

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000163
Physical Location & Seq
Forward (+)
16798025 .. 16798858
834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23720.t1

Sequence Viewer

Length: 834 bp
ATGGCGGCTCTAGAAGAAGTCGATTTTAAGTCCAACCCGAAACAAGTGACTGTAGAAGTGAATTCATGGGTAGAGAAGGAGACTAACGGCCTCATCAAAGATATTCTTCCTCCAGATGCCGTCAACAACCTCACGAAGCTCATCTTTGCAAATGCTTTATACTTCAAAGCATATTGGGTTAAGAAGTTTTCCAAATTTTCGACTAGAAAACGTAACTTCTATCTTCTGGATGGGAGCTCGGTTGAAGGAGTTCTTTACATGAGAGGCGGGGACTACCAATATATATGTGCCTTTGAAGGCTTCAAAGTCTTGAAGCTTCCTTACCGAAATCTTGGAGTTTCGCCCTGGAGTTTCTTTATGTACTTTTGCCTTCCGGATGCAAGAGATGGGCTGCCAGCTTTGGTAGAGCAAGTTTGTTCTGGATCCAGATTTTTGGAGGGCTGTGTTCCTGATGAAGAGCTTTATGTTGGTAAAATGTTAGTCCCAAAGTTTAAGATTTCTTCTGGTTTTGAAGCTTCAAAAGTCTTGAAAGCATCAGGCTTGGTGTTGCCTTTCAGTTTTGATCCTGTTAATAAAGGAGGTAATGTGAGTGAGATGGTCGAGTCTCCCTCCGGTGACGATCCATATGTATCAGCAATGTTTCATAAGTCGTGTATCGAAATTGATGAAGAAGGTACTGAAGCTTCAGCTGTGACTGCTCAAATATCTGGTGGGCGTGCTCCTCCTGTGGAAATAGACTTCGTGGCGGATCACCCTTTCATGTTTTTCAACAGAGAAGACAGTACAGGAACGGTGTTGTTCATGGGGACTGTGCTCAATCCCCTTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

278

Amino Acids

30.67

Weight (kDa)

4.98

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 2 - 274 2e-59 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 3 cut(s) 5, 267, 746
AclWI GGATC 5 cut(s) 417, 430, 557, 614, 756
AcsI RAATTY 2 cut(s) 61, 194
AcuI CTGAAG 2 cut(s) 669, 699
AfaI GTAC 3 cut(s) 362, 676, 784
AfiI CCNNNNNNNGG 1 cut(s) 827
AgsI TTSAA 9 cut(s) 166, 245, 296, 304, 313, 512, 519, 529, 769
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 8 cut(s) 139, 237, 316, 398, 460, 515, 683, 689
AluI AGCT 8 cut(s) 139, 237, 316, 398, 460, 515, 683, 689
Alw21I GWGCWC 3 cut(s) 239, 721, 816
Alw26I GTCTC 2 cut(s) 74, 609
AlwI GGATC 5 cut(s) 417, 430, 557, 614, 756
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 2 cut(s) 61, 194
Asp700I GAANNNNTTC 1 cut(s) 249
AsuHPI GGTGA 2 cut(s) 626, 743
BamHI GGATCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 239
BarI GAAGNNNNNNTAC 4 cut(s) 305, 337, 667, 699
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 3 cut(s) 239, 721, 816
BbvI GCAGC 1 cut(s) 378
BccI CCATC 3 cut(s) 224, 380, 589
BceAI ACGGC 2 cut(s) 103, 104
BciT130I CCWGG 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 74, 609
BfaI CTAG 2 cut(s) 11, 204
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 6, 392
BlsI GCNGC 2 cut(s) 7, 393
Bme1390I CCNGG 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 106, 367, 542
BpiI GAAGAC 1 cut(s) 783
BplI GAGNNNNNCTC 2 cut(s) 593, 625
BpmI CTGGAG 2 cut(s) 96, 367
BsaJI CCNNGG 1 cut(s) 344
BsaWI WCCGGW 2 cut(s) 373, 611
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse3DI GCAATG 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 235, 382
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 1 cut(s) 642
BseRI GAGGAG 1 cut(s) 711
BseXI GCAGC 1 cut(s) 378
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 3 cut(s) 239, 721, 816
BsiSI CCGG 2 cut(s) 374, 612
BslFI GGGAC 3 cut(s) 284, 467, 820
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 2 cut(s) 74, 609
BsmFI GGGAC 3 cut(s) 284, 467, 820
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 3 cut(s) 239, 721, 816
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 4 cut(s) 422, 562, 619, 748
BspACI CCGC 3 cut(s) 5, 267, 746
BspANI GGCC 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 424
BspPI GGATC 5 cut(s) 417, 430, 557, 614, 756
BspQI GCTCTTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 642
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 4 cut(s) 422, 562, 619, 748
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 4 cut(s) 52, 782, 793, 811
Bst6I CTCTTC 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 396, 717, 829
BstF5I GGATG 2 cut(s) 235, 382
BstKTI GATC 4 cut(s) 425, 565, 622, 751
BstMAI GTCTC 2 cut(s) 74, 609
BstMBI GATC 4 cut(s) 422, 562, 619, 748
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 235, 382
Cac8I GCNNGC 3 cut(s) 396, 717, 829
Csp6I GTAC 3 cut(s) 361, 675, 783
CviAII CATG 4 cut(s) 66, 259, 760, 802
CviQI GTAC 3 cut(s) 361, 675, 783
DpnI GATC 4 cut(s) 424, 564, 621, 750
DpnII GATC 4 cut(s) 422, 562, 619, 748
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 761
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 669, 699
EcoICRI GAGCTC 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 4 cut(s) 69, 262, 763, 805
FalI AAGNNNNNCTT 6 cut(s) 90, 122, 128, 160, 237, 269
FaqI GGGAC 3 cut(s) 284, 467, 820
FatI CATG 4 cut(s) 65, 258, 759, 801
FauI CCCGC 1 cut(s) 260
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 6, 392
FokI GGATG 2 cut(s) 242, 389
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 6, 392
FspBI CTAG 2 cut(s) 11, 204
GluI GCNGC 2 cut(s) 6, 392
GsuI CTGGAG 2 cut(s) 96, 367
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 374, 612
Hin1II CATG 4 cut(s) 69, 262, 763, 805
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 3 cut(s) 314, 513, 681
HinfI GANTC 1 cut(s) 602
HpaII CCGG 2 cut(s) 374, 612
HphI GGTGA 2 cut(s) 626, 743
Hpy166II GTNNAC 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 5 cut(s) 70, 239, 290, 380, 665
HpyCH4III ACNGT 4 cut(s) 52, 782, 793, 811
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 149, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 4 cut(s) 69, 262, 763, 805
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 4 cut(s) 422, 562, 619, 748
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 234, 724
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 3 cut(s) 106, 367, 542
MaeI CTAG 2 cut(s) 11, 204
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 4 cut(s) 46, 212, 614, 691
MalI GATC 4 cut(s) 424, 564, 621, 750
MboI GATC 4 cut(s) 422, 562, 619, 748
MboII GAAGA 7 cut(s) 26, 98, 215, 467, 492, 680, 788
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 3 cut(s) 239, 721, 816
MluCI AATT 3 cut(s) 61, 194, 660
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 8 cut(s) 101, 120, 140, 257, 430, 572, 619, 732
MroI TCCGGA 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 27, 180, 492, 570
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 2 cut(s) 374, 612
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 695
NdeI CATATG 1 cut(s) 625
NdeII GATC 4 cut(s) 422, 562, 619, 748
NlaIII CATG 4 cut(s) 69, 262, 763, 805
NlaIV GGNNCC 1 cut(s) 424
NmuCI GTSAC 3 cut(s) 46, 614, 691
PciSI GCTCTTC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 7, 393
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 424
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 3 cut(s) 362, 676, 784
RsaNI GTAC 3 cut(s) 361, 675, 783
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 4 cut(s) 27, 180, 492, 570
SatI GCNGC 2 cut(s) 6, 392
Sau3AI GATC 4 cut(s) 422, 562, 619, 748
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 3 cut(s) 239, 721, 816
SfaNI GCATC 3 cut(s) 106, 367, 542
SfcI CTRYAG 1 cut(s) 51
Sse9I AATT 3 cut(s) 61, 194, 660
SsiI CCGC 3 cut(s) 5, 267, 746
SspMI CTAG 2 cut(s) 11, 204
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 52, 782, 793, 811
TaiI ACGT 1 cut(s) 214
TaqI TCGA 4 cut(s) 21, 200, 600, 657
TasI AATT 3 cut(s) 61, 194, 660
TatI WGTACW 2 cut(s) 360, 782
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 27, 180, 492, 570
Tru9I TTAA 4 cut(s) 27, 180, 492, 570
TseFI GTSAC 3 cut(s) 46, 614, 691
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 3 cut(s) 46, 614, 691
TspDTI ATGAA 6 cut(s) 54, 468, 632, 681, 748, 790
XapI RAATTY 2 cut(s) 61, 194
XbaI TCTAGA 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 2 cut(s) 11, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.