MD02G1282300.v1.1

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
33822134 .. 33822547
414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1282300.v1.1.491

Sequence Viewer

Length: 414 bp
ATGAACTCAACTCCCTCGTCTCCCATCTTGTCCCTCGGGTTGTCCGACGGATCCACTAGAGGTGGTCCCTGCGTGAACTCTGGCAATAGCCTTTGGGTTGAGCACTCTCTGACTGTCAAACCTTCTTTCAAACGCATGTTGGTCAATGTTTACAATGCGGTCATTAAAGAAGTTAGCTTTGGAACCGACCCTGACAAAGCGTGGGTTCAAGTGAACTCATGGACCAAAAAGGAGACGAAGGGCCTTATCCCTGAGGCTCTCCCTCCTGGGTCAGTTGATGAAAATACCATGCTTTTACTTTTAAATACGATATACTTCAAAGGAGTTTGGAGCGATCGGTTTGATCCATCGGAGACAGAAGAGTGCAAATTTGGCCTTCTCGATGGTAGTACTGTTGAGGCTGTTGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

14.92

Weight (kDa)

4.8

Isoelectric Point (pI)

21.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 22 - 133 3.9e-29 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AclWI GGATC 3 cut(s) 45, 58, 338
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 1 cut(s) 391
AgsI TTSAA 3 cut(s) 130, 209, 319
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 24, 227, 347
AlwI GGATC 3 cut(s) 45, 58, 338
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 2 cut(s) 241, 373
ApoI RAATTY 1 cut(s) 368
AspS9I GGNCC 3 cut(s) 65, 222, 241
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 2 cut(s) 65, 222
AxyI CCTNAGG 1 cut(s) 252
BamHI GGATCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 3 cut(s) 32, 355, 377
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 3 cut(s) 24, 227, 347
BfaI CTAG 1 cut(s) 57
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 65, 222
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 65, 222, 241
BmiI GGNNCC 3 cut(s) 52, 67, 184
BmrFI CCNGG 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 34, 266
Bse21I CCTNAGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 34, 266
BseMII CTCAG 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 243, 375
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 16, 51
BsmAI GTCTC 3 cut(s) 24, 227, 347
BsmBI CGTCTC 2 cut(s) 24, 227
BsmFI GGGAC 2 cut(s) 16, 51
BsnI GGCC 2 cut(s) 243, 375
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 50, 334, 343
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 243, 375
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 52, 67, 184
BspPI GGATC 3 cut(s) 45, 58, 338
BssECI CCNNGG 2 cut(s) 34, 266
BssMI GATC 3 cut(s) 50, 334, 343
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 115, 394
Bst6I CTCTTC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 252
BstKTI GATC 3 cut(s) 53, 337, 346
BstMAI GTCTC 3 cut(s) 24, 227, 347
BstMBI GATC 3 cut(s) 50, 334, 343
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 243, 375
Cfr13I GGNCC 3 cut(s) 65, 222, 241
Csp6I GTAC 1 cut(s) 390
CviAII CATG 3 cut(s) 136, 219, 289
CviJI RGCY 6 cut(s) 90, 177, 243, 257, 375, 401
CviKI_1 RGCY 6 cut(s) 90, 177, 243, 257, 375, 401
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 52, 336, 345
DpnII GATC 3 cut(s) 50, 334, 343
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 65, 222
Eco81I CCTNAGG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 265
Esp3I CGTCTC 2 cut(s) 24, 227
FaeI CATG 3 cut(s) 139, 222, 292
FaiI YATR 4 cut(s) 137, 220, 290, 313
FaqI GGGAC 2 cut(s) 16, 51
FatI CATG 3 cut(s) 135, 218, 288
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 2 cut(s) 243, 375
Hin1II CATG 3 cut(s) 139, 222, 292
Hpy166II GTNNAC 3 cut(s) 76, 151, 214
Hpy188I TCNGA 3 cut(s) 46, 111, 352
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 3 cut(s) 76, 151, 214
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 132, 232, 386
HpyCH4III ACNGT 2 cut(s) 115, 394
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 3 cut(s) 139, 222, 292
Kzo9I GATC 3 cut(s) 50, 334, 343
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 6 cut(s) 66, 82, 204, 252, 264, 279
MaeI CTAG 1 cut(s) 57
MalI GATC 3 cut(s) 52, 336, 345
MboI GATC 3 cut(s) 50, 334, 343
MboII GAAGA 1 cut(s) 371
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 25, 44, 53, 247, 273, 391
MseI TTAA 3 cut(s) 165, 302, 412
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 3 cut(s) 50, 334, 343
NlaIII CATG 3 cut(s) 139, 222, 292
NlaIV GGNNCC 3 cut(s) 52, 67, 184
NspI RCATGY 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 52, 67, 184
PspPI GGNCC 3 cut(s) 65, 222, 241
PsuI RGATCY 1 cut(s) 50
PvuI CGATCG 1 cut(s) 337
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 165, 302, 412
Sau3AI GATC 3 cut(s) 50, 334, 343
Sau96I GGNCC 3 cut(s) 65, 222, 241
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 105
SetI ASST 3 cut(s) 64, 124, 179
SinI GGWCC 2 cut(s) 65, 222
Sse9I AATT 1 cut(s) 368
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 115, 394
TaqI TCGA 1 cut(s) 381
TasI AATT 1 cut(s) 368
TatI WGTACW 1 cut(s) 389
Tru1I TTAA 3 cut(s) 165, 302, 412
Tru9I TTAA 3 cut(s) 165, 302, 412
TspDTI ATGAA 2 cut(s) 17, 294
TspGWI ACGGA 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 65, 222
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 139
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.