RchiOBHm_Chr2g0163181

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000163
Physical Location & Seq
Forward (+)
78776482 .. 78777753
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53137

Sequence Viewer

Length: 567 bp
ATGGAAACTCGATCAGTTGATGGAGTACCTTACATGACTAGCTGTTTTGGTGGTTGCCACTCCATAAGTGCCTTTGACGGCTTTAAAGTCTTGAATCTTTCTTACAAAGGAAGTAGTGATTACAAGGACCATCGATGTTTCTCTATGCACTTGCTTCTTCCGGATGCAAGAAATGGGCTGCCGGCTCTGGTCGAGAGGGTTTGTTCGGAGTCTGGATTTTTAGATCGTCATCTAATTAAATGGAATATGGTTCGAGCTGGTCGCTTATTGATCCCAAAGTTCAAGATCTCTTCTAGGTTTGAAGCATCCTGTGTTTTGGAGAAACTAGTGCTGGGGGGTGTTGGTGCCAACACGAATATATTCCATCAAGCCGTAATTGAGGTTAATGAAGATGGCACAACTGCGGCAGCTGCTACTGTTGCCATATGGGTTGGGGCTTCTGCTCCGCCGCCTCAAGAGATACAAGACTTTGTGGCCGATCACCCATGCATTCATGCTATTCTCATCAGAGAAGGTGGTGGAACGGTGTTGTTCATGGGGCAAGTGCTCAATCCGCTTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

188

Amino Acids

20.3

Weight (kDa)

6.36

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 9 - 109 6.5e-06 Serpin (serine protease inhibitor)
Serpin PF00079 119 - 185 4.2e-12 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 4 cut(s) 404, 446, 449, 554
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 474
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 3 cut(s) 94, 283, 302
AhlI ACTAGT 1 cut(s) 325
AluBI AGCT 3 cut(s) 42, 257, 410
AluI AGCT 3 cut(s) 42, 257, 410
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 3 cut(s) 178, 407, 410
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 165, 397, 419
BccI CCATC 4 cut(s) 14, 138, 372, 386
BceAI ACGGC 2 cut(s) 94, 356
BcuI ACTAGT 1 cut(s) 325
BfaI CTAG 3 cut(s) 39, 294, 326
BglII AGATCT 1 cut(s) 285
BisI GCNGC 5 cut(s) 179, 405, 408, 411, 449
BlsI GCNGC 5 cut(s) 180, 406, 409, 412, 450
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 2 cut(s) 154, 314
BpuEI CTTGAG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse118I RCCGGY 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 133
BseGI GGATG 2 cut(s) 169, 305
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 560
BseXI GCAGC 3 cut(s) 165, 397, 419
BseYI CCCAGC 1 cut(s) 331
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 161, 182
BslI CCNNNNNNNGG 1 cut(s) 560
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 549
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 11, 223, 270, 285, 478
BspACI CCGC 4 cut(s) 404, 446, 449, 554
BspANI GGCC 1 cut(s) 476
BspDI ATCGAT 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 5 cut(s) 11, 223, 270, 285, 478
Bst4CI ACNGT 2 cut(s) 418, 526
Bst6I CTCTTC 1 cut(s) 295
BstC8I GCNNGC 3 cut(s) 183, 558, 562
BstF5I GGATG 2 cut(s) 169, 305
BstKTI GATC 5 cut(s) 14, 226, 273, 288, 481
BstMBI GATC 5 cut(s) 11, 223, 270, 285, 478
BstMWI GCNNNNNNNGC 3 cut(s) 410, 419, 553
BstV1I GCAGC 3 cut(s) 165, 397, 419
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 133
BsuRI GGCC 1 cut(s) 476
BsuTUI ATCGAT 1 cut(s) 133
BtsCI GGATG 2 cut(s) 169, 305
Cac8I GCNNGC 3 cut(s) 183, 558, 562
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 133
Csp6I GTAC 1 cut(s) 26
CviAII CATG 4 cut(s) 34, 486, 494, 535
CviQI GTAC 1 cut(s) 26
DpnI GATC 5 cut(s) 13, 225, 272, 287, 480
DpnII GATC 5 cut(s) 11, 223, 270, 285, 478
DraI TTTAAA 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 491
FaeI CATG 4 cut(s) 37, 489, 497, 538
FatI CATG 4 cut(s) 33, 485, 493, 534
FauNDI CATATG 1 cut(s) 425
Fnu4HI GCNGC 5 cut(s) 179, 405, 408, 411, 449
FokI GGATG 2 cut(s) 176, 292
Fsp4HI GCNGC 5 cut(s) 179, 405, 408, 411, 449
FspBI CTAG 3 cut(s) 39, 294, 326
GluI GCNGC 5 cut(s) 179, 405, 408, 411, 449
GsaI CCCAGC 1 cut(s) 335
HaeIII GGCC 1 cut(s) 476
HapII CCGG 2 cut(s) 161, 182
Hin1II CATG 4 cut(s) 37, 489, 497, 538
HinfI GANTC 2 cut(s) 94, 209
HpaII CCGG 2 cut(s) 161, 182
HphI GGTGA 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 208, 509
Hpy188III TCNNGA 6 cut(s) 91, 161, 193, 213, 283, 455
HpyAV CCTTC 1 cut(s) 506
HpyCH4III ACNGT 2 cut(s) 418, 526
HpyCH4V TGCA 3 cut(s) 148, 167, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 419, 553
Hsp92II CATG 4 cut(s) 37, 489, 497, 538
Kpn2I TCCGGA 1 cut(s) 160
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 5 cut(s) 11, 223, 270, 285, 478
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 8 cut(s) 173, 174, 195, 198, 243, 317, 322, 546
Lsp1109I GCAGC 3 cut(s) 165, 397, 419
LweI GCATC 2 cut(s) 154, 314
MaeI CTAG 3 cut(s) 39, 294, 326
MalI GATC 5 cut(s) 13, 225, 272, 287, 480
MboI GATC 5 cut(s) 11, 223, 270, 285, 478
MboII GAAGA 3 cut(s) 149, 282, 401
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 2 cut(s) 234, 375
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 189, 373, 462
Mph1103I ATGCAT 1 cut(s) 491
MroI TCCGGA 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 84, 237, 384
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 161, 182
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 3 cut(s) 410, 419, 553
NaeI GCCGGC 1 cut(s) 183
NdeI CATATG 1 cut(s) 425
NdeII GATC 5 cut(s) 11, 223, 270, 285, 478
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 4 cut(s) 37, 489, 497, 538
NlaIV GGNNCC 1 cut(s) 346
NsiI ATGCAT 1 cut(s) 491
PctI GAATGC 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 5 cut(s) 180, 406, 409, 412, 450
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 84, 237, 384
SatI GCNGC 5 cut(s) 179, 405, 408, 411, 449
Sau3AI GATC 5 cut(s) 11, 223, 270, 285, 478
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 549
SetI ASST 7 cut(s) 31, 44, 259, 299, 384, 412, 517
SfaNI GCATC 2 cut(s) 154, 314
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SpeI ACTAGT 1 cut(s) 325
Sse9I AATT 2 cut(s) 234, 375
SsiI CCGC 4 cut(s) 404, 446, 449, 554
SspMI CTAG 3 cut(s) 39, 294, 326
TaaI ACNGT 2 cut(s) 418, 526
TaqI TCGA 4 cut(s) 10, 133, 192, 253
TasI AATT 2 cut(s) 234, 375
TauI GCSGC 2 cut(s) 407, 451
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 84, 237, 384
Tru9I TTAA 3 cut(s) 84, 237, 384
TseI GCWGC 3 cut(s) 178, 407, 410
TspDTI ATGAA 3 cut(s) 402, 482, 523
VpaK11BI GGWCC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 3 cut(s) 39, 294, 326
Zsp2I ATGCAT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.