Rorug07G0105400

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000163
Physical Location & Seq
Reverse (-)
8267300 .. 8274947
7648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0105400.1

Sequence Viewer

Length: 2187 bp
ATGGCCATGAAGATCACATTGGTGATCCCAGCTTTGGATCCCAGTACACCAATATTTGCATCATCCTTCACCATGGAGCTTATTAGGAAACGTCTGAAGGAAAATGGGATTTTTGTTCCATCCAGACTCAAGATGTTCAGAACAAAGAGGAAATTTATGGCCGGGCCATTTGAAATTGAGCCTATCCGAGTGACACATTCTATTCCCGACTGTTGTGGATTAGTTCTTCGCTGTACTGATGGTACAATTCTTCATACCGGGGACTGGAAGATTGACGAGTCACCACTGGACGGTCAAGGTTTTGATCGTGAAGGTTTGGAAGAACTTTCAAAAGAAGGAGTAACATTGATGATGAGTGACTCTACAAATGTTCTCTCACCTGGAAGGACTACAAGTGAATCTTCTGTGGCAGATGCACTGATGAGGCATATTTCAGCAGCTCAAGGGAGGGTTATTACCACCCAGTTTGCTTCAAACATACATCGACTTGGAAGTGTGAAAGCTGCTGCTGATGCTACTGGTAGAAAGTTGGTATTTGTTGGTATGTCCTTAAGGACATATCTTGATGCAGCTTGGAGGGATGGGAAGGCACCAATTGATCCATCAACCCTGGTGAAAGTGGAAGATATTGATTCCTATGCTCCAAAGGATTTGCTAATCGTCACAACTGGCTCTCAAGCAGAACCACGTGCAGCTCTAAATCTTGCATCATTTGGAAGTAGTCATTCTGTCAAACTAACCAAGGAAGATATAATTTTATATTCTGCTAAGGTTATTCCTGGTAATGAATCTCGGGTAATGAAAATGTTAAACCGCATATCAGATATGGGATCAACGATAGTGATGGGTAAGAACGAGGGGCTGCACACTTCTGGTCATGGGTACCGTGGAGAACTGGAGGAAGTGCTTAGAATTGTGAAGCCGCAGCACTTTCTGCCCATACATGGAGAACTCTTGTTTCTCAAAGAGCATGAATTGCTTGGGAGATCAACTGGCATCCATCACACCACTGTAATAAAGAATGGGGAAATGCTTGGGGTTTCTCATTTGAGAAACAGAAGGGTACTTTCAAATGGTTTCACCTTGCTTGGAAAGGAGAATTTGCAGTTGAAATATAGTGATGGTGATAAAGCATTTGGTACATCAAGCGACCTTTGTGTTGATGAGAGACTAAAAATTGCCTTAGATGGCATAATAGTGGTCAGCATGGAAATTTTACGGCCCCAAAATGTAAATGGTCTGGCTGAAAGTAGCATAAAAGGAAAGATAAGAATTACCACCCGATGTTTGTGGCTTGACAAAGGAAAGCTATATGATGCGCTCTATAAAGCTGCCCATGCTGCACTGTCAAGCTGCCCTATTAATTGTCCTTTACCTCACATGGAAAGAACAGTGTCTGAGGTATTGAGGAAATTGGTAAGAAAATACAGTGGTAAAAGGCCAGAAGTTATTGCTATTGCCATGGAGAATCCCACAGCAGTTCTTGCCGATGAGGTCAGTACAAGACTATCTGGAAAGTCCCATGTTGGTTACGAGAGGTCAGCTTTACGAAAAGTAATTGATGGAAATTCAAATAAGAGTCGACCAACTAGGACAGAAGCAAATGAAGCCAAGGACAATACACATCTGCAGAGTACCACTTCAGAGCAAGATTTTGAAGATGATGGTGGTGAAGTCAAAGCACCACTACCTGTGGAAGTTTCCACTAGTTCAAAAGTCAATCCCGAAAAGCTTTCTTCTGATACAAAGGAGCCAGATGATTTCTGGAATGCAATGGTCAAGTTATCAGCTGGTGACAAATTAGCAGAAGATAAAGATGGTTTGGTTCTGCAAGAGGAACATGTAAAGAAAGATGACTCTGAAAGCACTGAGACACCAAATCCTTCAAAGCCGGTGAAACGGAACAAATGGAAGCCCGAGGAGGTTAAAAAGTTTATTGAAATGCGTGGGAAACTGCATAGCAGATTTCAAGTTGTGAAGGGGAGAATGGCGCTATGGGAAGAAATATCTAGAAACTTGTTGGCTGAGGGGATCAATCGAAGCCCCGGGCAATGCAAATCTTTGTGGTCATCTTTGGTTCAGAAATACGAGGAAAGCAAGAGTGGAAAGAGAAGCCCAAAGAGTTGGCCATATTATGAGGAAATGGATGGAGCTTTGTCTGATTCAGAGGCAATGGCAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

728

Amino Acids

80.59

Weight (kDa)

8.69

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_J_b_CASP PF22505 148 - 273 1e-29 Ribonuclease J, beta-CASP domain
RMMBL PF07521 288 - 334 8.3e-07 Zn-dependent metallo-hydrolase RNA specificity domain
Myb_DNA-bind_4 PF13837 634 - 716 4.2e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 882
AccB1I GGYRCC 2 cut(s) 589, 882
AccI GTMKAC 1 cut(s) 1582
AciI CCGC 2 cut(s) 814, 923
AclWI GGATC 6 cut(s) 19, 32, 45, 593, 838, 2039
AcoI YGGCCR 3 cut(s) 3, 159, 2126
AcsI RAATTY 4 cut(s) 152, 1099, 1212, 1567
AcuI CTGAAG 2 cut(s) 116, 1626
AcvI CACGTG 1 cut(s) 689
AfaI GTAC 8 cut(s) 46, 235, 244, 884, 1065, 1141, 1501, 1636
AfiI CCNNNNNNNGG 4 cut(s) 34, 264, 290, 944
AflII CTTAAG 1 cut(s) 550
AflIII ACRYGT 1 cut(s) 1840
AhlI ACTAGT 1 cut(s) 1706
AjnI CCWGG 3 cut(s) 379, 609, 778
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 1162, 1865
AlwI GGATC 6 cut(s) 19, 32, 45, 593, 838, 2039
AlwNI CAGNNNCTG 1 cut(s) 1397
Ama87I CYCGRG 3 cut(s) 792, 1916, 2045
AoxI GGCC 6 cut(s) 3, 159, 164, 1220, 1439, 2126
ApoI RAATTY 4 cut(s) 152, 1099, 1212, 1567
AseI ATTAAT 1 cut(s) 1362
Asp718I GGTACC 1 cut(s) 882
AspLEI GCGC 2 cut(s) 1321, 1993
AspS9I GGNCC 2 cut(s) 164, 1221
AsuC2I CCSGG 4 cut(s) 163, 259, 2046, 2047
AvaI CYCGRG 3 cut(s) 792, 1916, 2045
BalI TGGCCA 2 cut(s) 5, 2128
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 2 cut(s) 589, 882
BbrPI CACGTG 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 2025
BceAI ACGGC 1 cut(s) 1235
BciT130I CCWGG 3 cut(s) 381, 611, 780
BcnI CCSGG 4 cut(s) 163, 259, 2046, 2047
BcoDI GTCTC 2 cut(s) 1162, 1865
BcuI ACTAGT 1 cut(s) 1706
BfaI CTAG 3 cut(s) 1590, 1707, 2010
BfmI CTRYAG 1 cut(s) 1628
BfoI RGCGCY 1 cut(s) 1994
BfrI CTTAAG 1 cut(s) 550
Bme1390I CCNGG 7 cut(s) 163, 259, 381, 611, 780, 2046, 2047
BmeT110I CYCGRG 3 cut(s) 792, 1916, 2045
BmgT120I GGNCC 2 cut(s) 164, 1221
BmiI GGNNCC 5 cut(s) 39, 591, 884, 1223, 1752
BmrFI CCNGG 7 cut(s) 163, 259, 381, 611, 780, 2046, 2047
BmrI ACTGGG 2 cut(s) 36, 457
BmsI GCATC 7 cut(s) 68, 403, 502, 556, 716, 1005, 1306
BmuI ACTGGG 2 cut(s) 36, 457
BpmI CTGGAG 1 cut(s) 917
Bpu10I CCTNAGC 2 cut(s) 768, 2025
BpuEI CTTGAG 3 cut(s) 113, 426, 660
BpuMI CCSGG 4 cut(s) 163, 259, 2046, 2047
BsaAI YACGTR 1 cut(s) 689
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 264, 290, 944
Bse118I RCCGGY 1 cut(s) 1891
Bse1I ACTGG 8 cut(s) 42, 269, 291, 463, 523, 673, 900, 997
Bse3DI GCAATG 3 cut(s) 1779, 2057, 2178
BseBI CCWGG 3 cut(s) 381, 611, 780
BseGI GGATG 5 cut(s) 62, 119, 586, 996, 2152
BseLI CCNNNNNNNGG 4 cut(s) 34, 264, 290, 944
BseMI GCAATG 3 cut(s) 1779, 2057, 2178
BseMII CTCAG 3 cut(s) 1389, 1860, 2016
BseNI ACTGG 8 cut(s) 42, 269, 291, 463, 523, 673, 900, 997
BseRI GAGGAG 1 cut(s) 1934
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 3 cut(s) 711, 848, 1326
BshFI GGCC 6 cut(s) 5, 161, 166, 1222, 1441, 2128
BshNI GGYRCC 2 cut(s) 589, 882
BsiHKCI CYCGRG 3 cut(s) 792, 1916, 2045
BsiSI CCGG 4 cut(s) 162, 258, 1892, 2046
BslFI GGGAC 2 cut(s) 275, 1504
BslI CCNNNNNNNGG 4 cut(s) 34, 264, 290, 944
BsmAI GTCTC 2 cut(s) 1162, 1865
BsmFI GGGAC 2 cut(s) 275, 1504
BsmI GAATGC 1 cut(s) 1774
BsnI GGCC 6 cut(s) 5, 161, 166, 1222, 1441, 2128
BsoBI CYCGRG 3 cut(s) 792, 1916, 2045
Bsp143I GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
Bsp19I CCATGG 2 cut(s) 72, 1461
BspACI CCGC 2 cut(s) 814, 923
BspANI GGCC 6 cut(s) 5, 161, 166, 1222, 1441, 2128
BspCNI CTCAG 3 cut(s) 1390, 1861, 2017
BspLI GGNNCC 5 cut(s) 39, 591, 884, 1223, 1752
BspMAI CTGCAG 1 cut(s) 1632
BspPI GGATC 6 cut(s) 19, 32, 45, 593, 838, 2039
BspT107I GGYRCC 2 cut(s) 589, 882
BspTI CTTAAG 1 cut(s) 550
BsrDI GCAATG 3 cut(s) 1779, 2057, 2178
BsrFI RCCGGY 1 cut(s) 1891
BsrI ACTGG 8 cut(s) 42, 269, 291, 463, 523, 673, 900, 997
BssAI RCCGGY 1 cut(s) 1891
BssMI GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
BssT1I CCWWGG 4 cut(s) 72, 741, 1461, 1611
Bst2UI CCWGG 3 cut(s) 381, 611, 780
Bst4CI ACNGT 7 cut(s) 212, 293, 887, 1012, 1347, 1393, 1430
BstAFI CTTAAG 1 cut(s) 550
BstAPI GCANNNNNTGC 3 cut(s) 934, 976, 1484
BstBAI YACGTR 1 cut(s) 689
BstDEI CTNAG 6 cut(s) 768, 908, 1183, 1398, 1869, 2025
BstDSI CCRYGG 3 cut(s) 72, 886, 1461
BstF5I GGATG 5 cut(s) 62, 119, 586, 996, 2152
BstH2I RGCGCY 1 cut(s) 1994
BstHHI GCGC 2 cut(s) 1321, 1993
BstKTI GATC 8 cut(s) 15, 27, 40, 307, 601, 833, 989, 2034
BstMAI GTCTC 2 cut(s) 1162, 1865
BstMBI GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
BstMWI GCNNNNNNNGC 7 cut(s) 512, 934, 976, 1337, 1340, 1484, 1607
BstNI CCWGG 3 cut(s) 381, 611, 780
BstNSI RCATGY 1 cut(s) 1844
BstSCI CCNGG 7 cut(s) 161, 257, 379, 609, 778, 2044, 2045
BstSFI CTRYAG 1 cut(s) 1628
BstX2I RGATCY 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 2124
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 6 cut(s) 5, 161, 166, 1222, 1441, 2128
BtgI CCRYGG 3 cut(s) 72, 886, 1461
BtsCI GGATG 5 cut(s) 62, 119, 586, 996, 2152
BtsIMutI CAGTG 7 cut(s) 284, 416, 1008, 1343, 1398, 1435, 1866
CaiI CAGNNNCTG 1 cut(s) 1397
CfoI GCGC 2 cut(s) 1321, 1993
Cfr10I RCCGGY 1 cut(s) 1891
Cfr13I GGNCC 2 cut(s) 164, 1221
Cfr9I CCCGGG 1 cut(s) 2045
Csp6I GTAC 8 cut(s) 45, 234, 243, 883, 1064, 1140, 1500, 1635
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviQI GTAC 8 cut(s) 45, 234, 243, 883, 1064, 1140, 1500, 1635
DdeI CTNAG 6 cut(s) 768, 908, 1183, 1398, 1869, 2025
DpnI GATC 8 cut(s) 14, 26, 39, 306, 600, 832, 988, 2033
DpnII GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
EaeI YGGCCR 3 cut(s) 3, 159, 2126
Eco130I CCWWGG 4 cut(s) 72, 741, 1461, 1611
Eco57I CTGAAG 2 cut(s) 116, 1626
Eco72I CACGTG 1 cut(s) 689
Eco88I CYCGRG 3 cut(s) 792, 1916, 2045
EcoRII CCWGG 3 cut(s) 379, 609, 778
EcoT14I CCWWGG 4 cut(s) 72, 741, 1461, 1611
ErhI CCWWGG 4 cut(s) 72, 741, 1461, 1611
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FaqI GGGAC 2 cut(s) 275, 1504
FblI GTMKAC 1 cut(s) 1582
FokI GGATG 5 cut(s) 49, 106, 593, 983, 2159
FspBI CTAG 3 cut(s) 1590, 1707, 2010
GlaI GCGC 2 cut(s) 1320, 1992
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 917
HaeII RGCGCY 1 cut(s) 1994
HaeIII GGCC 6 cut(s) 5, 161, 166, 1222, 1441, 2128
HapII CCGG 4 cut(s) 162, 258, 1892, 2046
HhaI GCGC 2 cut(s) 1321, 1993
Hin6I GCGC 2 cut(s) 1319, 1991
HinP1I GCGC 2 cut(s) 1319, 1991
HincII GTYRAC 1 cut(s) 1583
HindII GTYRAC 1 cut(s) 1583
HindIII AAGCTT 1 cut(s) 1730
HpaII CCGG 4 cut(s) 162, 258, 1892, 2046
Hpy166II GTNNAC 2 cut(s) 47, 1583
Hpy188III TCNNGA 9 cut(s) 123, 130, 206, 308, 563, 1512, 1724, 1765, 2010
Hpy8I GTNNAC 2 cut(s) 47, 1583
HpyAV CCTTC 9 cut(s) 76, 91, 305, 329, 378, 580, 1053, 1893, 1972
HpyCH4III ACNGT 7 cut(s) 212, 293, 887, 1012, 1347, 1393, 1430
HpyCH4IV ACGT 2 cut(s) 91, 688
HpyF10VI GCNNNNNNNGC 7 cut(s) 512, 934, 976, 1337, 1340, 1484, 1607
HpyF3I CTNAG 6 cut(s) 768, 908, 1183, 1398, 1869, 2025
HpySE526I ACGT 2 cut(s) 91, 688
HspAI GCGC 2 cut(s) 1319, 1991
KpnI GGTACC 1 cut(s) 886
Kzo9I GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
LmnI GCTCC 4 cut(s) 76, 646, 1750, 2150
LweI GCATC 7 cut(s) 68, 403, 502, 556, 716, 1005, 1306
MaeI CTAG 3 cut(s) 1590, 1707, 2010
MaeII ACGT 2 cut(s) 91, 688
MaeIII GTNAC 7 cut(s) 190, 279, 340, 356, 661, 1529, 1793
MalI GATC 8 cut(s) 14, 26, 39, 306, 600, 832, 988, 2033
MboI GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 37
MlsI TGGCCA 2 cut(s) 5, 2128
MluNI TGGCCA 2 cut(s) 5, 2128
MlyI GAGTC 5 cut(s) 120, 287, 353, 1588, 1850
Mox20I TGGCCA 2 cut(s) 5, 2128
MscI TGGCCA 2 cut(s) 5, 2128
MseI TTAA 4 cut(s) 551, 809, 1362, 1926
MslI CAYNNNNRTG 2 cut(s) 20, 1196
Msp20I TGGCCA 2 cut(s) 5, 2128
MspA1I CMGCKG 1 cut(s) 1790
MspCI CTTAAG 1 cut(s) 550
MspI CCGG 4 cut(s) 162, 258, 1892, 2046
MspR9I CCNGG 7 cut(s) 163, 259, 381, 611, 780, 2046, 2047
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 1774
MvaI CCWGG 3 cut(s) 381, 611, 780
MwoI GCNNNNNNNGC 7 cut(s) 512, 934, 976, 1337, 1340, 1484, 1607
NciI CCSGG 4 cut(s) 163, 259, 2046, 2047
NcoI CCATGG 2 cut(s) 72, 1461
NdeII GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
NlaIV GGNNCC 5 cut(s) 39, 591, 884, 1223, 1752
NmuCI GTSAC 5 cut(s) 190, 279, 356, 661, 1793
NspI RCATGY 1 cut(s) 1844
OliI CACNNNNGTG 1 cut(s) 20
PciI ACATGT 1 cut(s) 1840
PctI GAATGC 1 cut(s) 1774
PfeI GAWTC 5 cut(s) 398, 632, 788, 1468, 2162
PleI GAGTC 5 cut(s) 120, 286, 353, 1587, 1850
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 5 cut(s) 120, 286, 353, 1587, 1850
Ppu21I YACGTR 1 cut(s) 689
PscI ACATGT 1 cut(s) 1840
PshBI ATTAAT 1 cut(s) 1362
Psp6I CCWGG 3 cut(s) 379, 609, 778
PspCI CACGTG 1 cut(s) 689
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 3 cut(s) 379, 609, 778
PspN4I GGNNCC 5 cut(s) 39, 591, 884, 1223, 1752
PspPI GGNCC 2 cut(s) 164, 1221
PstI CTGCAG 1 cut(s) 1632
PstNI CAGNNNCTG 1 cut(s) 1397
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 1790
RsaI GTAC 8 cut(s) 46, 235, 244, 884, 1065, 1141, 1501, 1636
RsaNI GTAC 8 cut(s) 45, 234, 243, 883, 1064, 1140, 1500, 1635
RseI CAYNNNNRTG 2 cut(s) 20, 1196
SalI GTCGAC 1 cut(s) 1581
SaqAI TTAA 4 cut(s) 551, 809, 1362, 1926
Sau3AI GATC 8 cut(s) 12, 24, 37, 304, 598, 830, 986, 2031
Sau96I GGNCC 2 cut(s) 164, 1221
SchI GAGTC 5 cut(s) 120, 287, 353, 1588, 1850
ScrFI CCNGG 7 cut(s) 163, 259, 381, 611, 780, 2046, 2047
SfaNI GCATC 7 cut(s) 68, 403, 502, 556, 716, 1005, 1306
SfcI CTRYAG 1 cut(s) 1628
SmaI CCCGGG 1 cut(s) 2047
SmiMI CAYNNNNRTG 2 cut(s) 20, 1196
SmlI CTYRAG 4 cut(s) 128, 441, 550, 675
SmoI CTYRAG 4 cut(s) 128, 441, 550, 675
SpeI ACTAGT 1 cut(s) 1706
SsiI CCGC 2 cut(s) 814, 923
SspI AATATT 1 cut(s) 54
SspMI CTAG 3 cut(s) 1590, 1707, 2010
StyD4I CCNGG 7 cut(s) 161, 257, 379, 609, 778, 2044, 2045
StyI CCWWGG 4 cut(s) 72, 741, 1461, 1611
TaaI ACNGT 7 cut(s) 212, 293, 887, 1012, 1347, 1393, 1430
TaiI ACGT 2 cut(s) 94, 691
TaqI TCGA 3 cut(s) 484, 1582, 2038
TatI WGTACW 3 cut(s) 44, 233, 1499
TauI GCSGC 1 cut(s) 925
TfiI GAWTC 5 cut(s) 398, 632, 788, 1468, 2162
Tru1I TTAA 4 cut(s) 551, 809, 1362, 1926
Tru9I TTAA 4 cut(s) 551, 809, 1362, 1926
TscAI CASTG 7 cut(s) 291, 423, 1015, 1350, 1398, 1435, 1873
TseFI GTSAC 5 cut(s) 190, 279, 356, 661, 1793
Tsp45I GTSAC 5 cut(s) 190, 279, 356, 661, 1793
TspDTI ATGAA 6 cut(s) 23, 242, 801, 815, 987, 1620
TspGWI ACGGA 1 cut(s) 1915
TspMI CCCGGG 1 cut(s) 2045
TspRI CASTG 7 cut(s) 291, 423, 1015, 1350, 1398, 1435, 1873
Vha464I CTTAAG 1 cut(s) 550
VspI ATTAAT 1 cut(s) 1362
XapI RAATTY 4 cut(s) 152, 1099, 1212, 1567
XbaI TCTAGA 1 cut(s) 2009
XceI RCATGY 1 cut(s) 1844
XcmI CCANNNNNNNNNTGG 2 cut(s) 1232, 1761
XmaI CCCGGG 1 cut(s) 2045
XmiI GTMKAC 1 cut(s) 1582
XspI CTAG 3 cut(s) 1590, 1707, 2010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.