RLG00000031323

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000163
Physical Location & Seq
Forward (+)
4084819 .. 4085291
473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031323

Sequence Viewer

Length: 351 bp
ATGGACATGAACGTGGTGTTCTCGCCGCTGTCCATCCATATGGTTCTTAGCATGATAGCAGCTGGCGCCAAGGGTTTCGACCAAGAAGAGATGCTCAATTTCCTCAAGTCCAAGTCCATACACGAGCTCAACACTCTCGCCTCCAATGTCATCCCCCTAGTCTTTGCCGATGGATCTAAACACGGCGGGCCTCTCTTGTCATATGCCAATGGGGTTTGGATAGATGAATCTCTCTCTATCAAGCCTTCTTTCAAAAATGTACTAGACACTGATTACAAGGCGACCTTGAAACAAGTTGATTTCCAGACTGAGCCAGAGGAAGTGCGACATGAAGTGAATTCCTGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

5.02

Isoelectric Point (pI)

23.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 3 - 115 5.2e-22 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 2 cut(s) 26, 186
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 2 cut(s) 253, 289
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 62, 127
AluI AGCT 2 cut(s) 62, 127
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 41, 164
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 343
BfaI CTAG 2 cut(s) 158, 263
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 2 cut(s) 26, 60
BlsI GCNGC 2 cut(s) 27, 61
Bme1390I CCNGG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 69, 342
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 69, 342
BseGI GGATG 2 cut(s) 33, 150
BseMII CTCAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 129
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 2 cut(s) 26, 186
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 69, 342
BssMI GATC 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 81
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 64, 188
BstDEI CTNAG 2 cut(s) 47, 309
BstF5I GGATG 2 cut(s) 33, 150
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 33, 150
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 64, 188
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 260
CviAII CATG 3 cut(s) 7, 52, 329
CviJI RGCY 5 cut(s) 62, 127, 190, 244, 313
CviKI_1 RGCY 5 cut(s) 62, 127, 190, 244, 313
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 47, 309
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 10, 55, 332
FaiI YATR 8 cut(s) 8, 39, 41, 53, 119, 202, 204, 330
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 3 cut(s) 6, 51, 328
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 2 cut(s) 39, 202
Fnu4HI GCNGC 2 cut(s) 26, 60
FokI GGATG 2 cut(s) 20, 137
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 26, 60
FspBI CTAG 2 cut(s) 158, 263
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 26, 60
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 190
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 10, 55, 332
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 47, 309
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 10, 55, 332
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 48, 317, 327, 328
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 81
MaeI CTAG 2 cut(s) 158, 263
MaeII ACGT 1 cut(s) 12
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 97, 337
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 4 cut(s) 113, 151, 201, 310
MslI CAYNNNNRTG 2 cut(s) 11, 38
MspA1I CMGCKG 2 cut(s) 28, 62
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 65
NarI GGCGCC 1 cut(s) 66
NdeI CATATG 2 cut(s) 39, 202
NdeII GATC 1 cut(s) 173
NlaIII CATG 3 cut(s) 10, 55, 332
NlaIV GGNNCC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 27, 61
PluTI GGCGCC 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 11, 38
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 2 cut(s) 26, 60
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 129
SetI ASST 4 cut(s) 15, 64, 129, 287
SfaNI GCATC 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 11, 38
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 97, 337
SsiI CCGC 2 cut(s) 26, 186
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 2 cut(s) 158, 263
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 97, 337
TatI WGTACW 1 cut(s) 259
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 23, 240, 345
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 337
XspI CTAG 2 cut(s) 158, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.