Rorug03G0004800

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000163
Physical Location & Seq
Reverse (-)
377140 .. 377417
278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0004800.1

Sequence Viewer

Length: 249 bp
ATGATTGCTTTGAGCTTGAGAGGGTCCGACTTTGAATTCATTCCATTTGGAGTTGGTAAGAGAGTGTGTCTGGGCATTTCATTTGAAACTGTTGCTATTGAGATTGCACTTTCTCAGTTGCTCTACTTCTTCAACTGGAAACTCCCAAATGGGACACACCCACAAGAGCTTGACATGACTGAATCCAAGGGAATAAGCACTAGGAAGAGAAATGAATTGAAAGTTATTGCAATTCCTTTCTTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

82

Amino Acids

9.28

Weight (kDa)

7.91

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 73 7.7e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 35
AgsI TTSAA 4 cut(s) 35, 86, 133, 220
AluBI AGCT 2 cut(s) 15, 169
AluI AGCT 2 cut(s) 15, 169
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 24
AvaII GGWCC 1 cut(s) 24
BfaI CTAG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 1 cut(s) 175
CviJI RGCY 2 cut(s) 15, 169
CviKI_1 RGCY 2 cut(s) 15, 169
DdeI CTNAG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 176, 247
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 201
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 107, 230
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 178
LpnPI CCDG 2 cut(s) 56, 121
MaeI CTAG 1 cut(s) 201
MboII GAAGA 2 cut(s) 121, 217
MluCI AATT 3 cut(s) 35, 215, 231
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 39
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 24
SetI ASST 2 cut(s) 17, 171
SgeI CNNG 8 cut(s) 28, 83, 148, 176, 182, 187, 199, 213
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 3 cut(s) 35, 215, 231
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 91
TasI AATT 3 cut(s) 35, 215, 231
TfiI GAWTC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 28, 69, 228
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.