Rw3G005130

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000163
Physical Location & Seq
Forward (+)
4295666 .. 4296516
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005130.1

Sequence Viewer

Length: 654 bp
ATGTTACAAACAGGTGGTGTTGGATTTTACAAGGCTGCTCTAAATCAAGTCGATTTCAAAACCAATCCGGAACTAGTCAGAAAAAAAGTGAATTCATGGATTCTTCCTCCCGGATCAGTCAACACTGCGACGATGATCATCTTTGCAAACGCCTTATACTCAAAGCAACGTGGAATGTTCGATACTTCAATGCATCGAAAACAATCAACAGTGAACCCCCGAAGTTTCTCCATGTTCTGGTTACTTCCGGATGCAAGAGATTGGCTGCCGGCTCTGGTTGAGAGAGCTGGGTCGGAGCCGGGGTTTCTAGATCACCATCTTAATGGTTGTTGCAGGCGTGTTAGGGTTGGGAAATTCTTGATCCCAAAGTTTAAGATGTCTTCAGGGTTTGAAGCTTCGAGTGCTACGAAGAAATTAGGGCTGGGTTGTGATTTAATGGCCATATTTCATGAGGCTGTAATAGAGGTCGATGAAAATGGCACAAAAGCTGCAGCTGCTACTTGTGCTCGTAGTTATTTTGGCGATGGTGAGGTCTCTAAGCCTGATGAGGAAGAAGACTTTGTGGCTGATCACACCTTCATGTTTCTCACAAGGGAAGACCTGACCGGAACGGTCATGTTCATGGGGCAGATGCTCAATCCTCTTGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

217

Amino Acids

24.04

Weight (kDa)

6.96

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 147 - 214 4.5e-15 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AccIII TCCGGA 2 cut(s) 67, 247
AclWI GGATC 2 cut(s) 121, 355
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 2 cut(s) 91, 353
AcuI CTGAAG 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 237, 647
AgsI TTSAA 3 cut(s) 58, 189, 392
AhlI ACTAGT 1 cut(s) 73
AluBI AGCT 4 cut(s) 287, 395, 488, 494
AluI AGCT 4 cut(s) 287, 395, 488, 494
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 2 cut(s) 121, 355
Aor13HI TCCGGA 2 cut(s) 67, 247
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 5 cut(s) 35, 265, 488, 491, 494
ApoI RAATTY 2 cut(s) 91, 353
AsuC2I CCSGG 2 cut(s) 111, 300
AsuHPI GGTGA 2 cut(s) 305, 539
BalI TGGCCA 1 cut(s) 440
BbsI GAAGAC 3 cut(s) 372, 561, 603
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 5 cut(s) 22, 252, 475, 481, 503
BccI CCATC 2 cut(s) 324, 518
BclI TGATCA 2 cut(s) 135, 568
BcnI CCSGG 2 cut(s) 111, 300
BcoDI GTCTC 1 cut(s) 538
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 2 cut(s) 74, 308
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 5 cut(s) 36, 266, 489, 492, 495
BlsI GCNGC 5 cut(s) 37, 267, 490, 493, 496
Bme1390I CCNGG 2 cut(s) 111, 300
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 2 cut(s) 111, 300
BmsI GCATC 3 cut(s) 202, 241, 621
BpiI GAAGAC 3 cut(s) 372, 561, 603
BpuMI CCSGG 2 cut(s) 111, 300
BsaBI GATNNNNATC 2 cut(s) 137, 315
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 299
BsaWI WCCGGW 3 cut(s) 67, 247, 605
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 647
Bse118I RCCGGY 1 cut(s) 268
Bse8I GATNNNNATC 2 cut(s) 137, 315
BseAI TCCGGA 2 cut(s) 67, 247
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 2 cut(s) 137, 315
BseLI CCNNNNNNNGG 2 cut(s) 237, 647
BseXI GCAGC 5 cut(s) 22, 252, 475, 481, 503
BseYI CCCAGC 2 cut(s) 287, 421
BshFI GGCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 508
BsiSI CCGG 6 cut(s) 68, 111, 248, 269, 299, 606
BslI CCNNNNNNNGG 2 cut(s) 237, 647
BsmAI GTCTC 1 cut(s) 538
BsnI GGCC 1 cut(s) 440
Bso31I GGTCTC 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 508
Bsp13I TCCGGA 2 cut(s) 67, 247
Bsp143I GATC 5 cut(s) 113, 135, 310, 360, 568
BspANI GGCC 1 cut(s) 440
BspEI TCCGGA 2 cut(s) 67, 247
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 2 cut(s) 121, 355
BspTNI GGTCTC 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 5 cut(s) 113, 135, 310, 360, 568
Bst4CI ACNGT 2 cut(s) 211, 613
BstC8I GCNNGC 3 cut(s) 270, 335, 649
BstDEI CTNAG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 5 cut(s) 116, 138, 313, 363, 571
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 5 cut(s) 113, 135, 310, 360, 568
BstMWI GCNNNNNNNGC 3 cut(s) 401, 494, 503
BstSCI CCNGG 2 cut(s) 109, 298
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 5 cut(s) 22, 252, 475, 481, 503
BstV2I GAAGAC 3 cut(s) 372, 561, 603
BstXI CCANNNNNNTGG 1 cut(s) 323
BsuRI GGCC 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 216
Cac8I GCNNGC 3 cut(s) 270, 335, 649
CciI TCATGA 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 268
CviAII CATG 6 cut(s) 96, 232, 449, 580, 616, 622
DdeI CTNAG 1 cut(s) 537
DpnI GATC 5 cut(s) 115, 137, 312, 362, 570
DpnII GATC 5 cut(s) 113, 135, 310, 360, 568
EaeI YGGCCR 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 366
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 195
FaeI CATG 6 cut(s) 99, 235, 452, 583, 619, 625
FaiI YATR 8 cut(s) 97, 157, 233, 443, 450, 581, 617, 623
FatI CATG 6 cut(s) 95, 231, 448, 579, 615, 621
FbaI TGATCA 2 cut(s) 135, 568
Fnu4HI GCNGC 5 cut(s) 36, 266, 489, 492, 495
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 5 cut(s) 36, 266, 489, 492, 495
FspBI CTAG 2 cut(s) 74, 308
GluI GCNGC 5 cut(s) 36, 266, 489, 492, 495
GsaI CCCAGC 2 cut(s) 291, 425
HaeIII GGCC 1 cut(s) 440
HapII CCGG 6 cut(s) 68, 111, 248, 269, 299, 606
Hin1II CATG 6 cut(s) 99, 235, 452, 583, 619, 625
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 1 cut(s) 100
HpaII CCGG 6 cut(s) 68, 111, 248, 269, 299, 606
HphI GGTGA 2 cut(s) 305, 539
Hpy166II GTNNAC 2 cut(s) 121, 214
Hpy188I TCNGA 2 cut(s) 80, 295
Hpy188III TCNNGA 5 cut(s) 68, 248, 308, 358, 449
Hpy8I GTNNAC 2 cut(s) 121, 214
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 2 cut(s) 211, 613
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 6 cut(s) 146, 193, 254, 333, 491, 647
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 494, 503
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 6 cut(s) 99, 235, 452, 583, 619, 625
Kpn2I TCCGGA 2 cut(s) 67, 247
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
Ksp22I TGATCA 2 cut(s) 135, 568
Kzo9I GATC 5 cut(s) 113, 135, 310, 360, 568
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 5 cut(s) 22, 252, 475, 481, 503
LweI GCATC 3 cut(s) 202, 241, 621
MaeI CTAG 2 cut(s) 74, 308
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 3, 240
MalI GATC 5 cut(s) 115, 137, 312, 362, 570
MboI GATC 5 cut(s) 113, 135, 310, 360, 568
MboII GAAGA 6 cut(s) 95, 372, 421, 563, 566, 608
MhlI GDGCHC 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 3 cut(s) 91, 353, 413
MluNI TGGCCA 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 117, 445, 457, 523, 541, 651
Mox20I TGGCCA 1 cut(s) 440
Mph1103I ATGCAT 1 cut(s) 195
MroI TCCGGA 2 cut(s) 67, 247
MroNI GCCGGC 1 cut(s) 268
MscI TGGCCA 1 cut(s) 440
MseI TTAA 3 cut(s) 321, 372, 434
MslI CAYNNNNRTG 3 cut(s) 321, 578, 620
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 6 cut(s) 68, 111, 248, 269, 299, 606
MspR9I CCNGG 2 cut(s) 111, 300
MwoI GCNNNNNNNGC 3 cut(s) 401, 494, 503
NaeI GCCGGC 1 cut(s) 270
NciI CCSGG 2 cut(s) 111, 300
NdeII GATC 5 cut(s) 113, 135, 310, 360, 568
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 6 cut(s) 99, 235, 452, 583, 619, 625
NlaIV GGNNCC 1 cut(s) 297
NsiI ATGCAT 1 cut(s) 195
PagI TCATGA 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 237
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 5 cut(s) 37, 267, 490, 493, 496
PspFI CCCAGC 2 cut(s) 287, 421
PspN4I GGNNCC 1 cut(s) 297
PstI CTGCAG 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 494
RseI CAYNNNNRTG 3 cut(s) 321, 578, 620
SaqAI TTAA 3 cut(s) 321, 372, 434
SatI GCNGC 5 cut(s) 36, 266, 489, 492, 495
Sau3AI GATC 5 cut(s) 113, 135, 310, 360, 568
ScrFI CCNGG 2 cut(s) 111, 300
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 3 cut(s) 202, 241, 621
SfcI CTRYAG 1 cut(s) 489
SmiMI CAYNNNNRTG 3 cut(s) 321, 578, 620
SpeI ACTAGT 1 cut(s) 73
Sse9I AATT 3 cut(s) 91, 353, 413
SspMI CTAG 2 cut(s) 74, 308
StyD4I CCNGG 2 cut(s) 109, 298
TaaI ACNGT 2 cut(s) 211, 613
TaiI ACGT 1 cut(s) 172
TaqI TCGA 5 cut(s) 51, 180, 196, 398, 468
TasI AATT 3 cut(s) 91, 353, 413
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 3 cut(s) 321, 372, 434
Tru9I TTAA 3 cut(s) 321, 372, 434
TscAI CASTG 2 cut(s) 130, 216
TseI GCWGC 5 cut(s) 35, 265, 488, 491, 494
TspDTI ATGAA 5 cut(s) 84, 437, 486, 568, 610
TspRI CASTG 2 cut(s) 130, 216
Van91I CCANNNNNTGG 1 cut(s) 237
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 2 cut(s) 91, 353
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 2 cut(s) 74, 308
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.