Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

12691884 .. 12692349

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGGCGGTATTCCATACGCTTGTTTGTTCCGAACGCAAAAGATGGTCTGCCGGCTTTGGTTGACACACTTGGTTCCGATCCTGGCTTATTAGATGACTATAATATTCCATCTTGGGGAGTAAGAGTTGGTGACTTGAGAATCCCAAACCTCTATCATAAAGCCGTCGTTGAAGTTGATGAAAAAGGCACCAAAGCTGCAGCTGCTACTCCCGGGCGCCGTTTGATGTGTTCGCCTTATCAGACAGATTTTGTGGCTGATCATCCATTCATGTTCGTGATCAGAGAAGACATGACGGGAACGGTTCTGTTCATTGGCGCTGCGCTCAATCCACTACTTGAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

116

Amino Acids

12.65

Weight (kDa)

5.56

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	44 - 111	2.1e-19	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 216
AciI	CCGC	2 cut(s)	4, 7
AclWI	GGATC	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	197, 203
AluI	AGCT	2 cut(s)	197, 203
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	212
ApeKI	GCWGC	4 cut(s)	197, 200, 203, 320
AspLEI	GCGC	3 cut(s)	219, 320, 325
AsuC2I	CCSGG	2 cut(s)	213, 214
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	188, 216
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	184, 190, 212, 307
BccI	CCATC	2 cut(s)	38, 118
BceAI	ACGGC	2 cut(s)	149, 204
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	2 cut(s)	259, 279
BcnI	CCSGG	2 cut(s)	213, 214
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	2 cut(s)	220, 321
BisI	GCNGC	5 cut(s)	5, 198, 201, 204, 321
BlsI	GCNGC	5 cut(s)	6, 199, 202, 205, 322
Bme1390I	CCNGG	3 cut(s)	84, 213, 214
BmeT110I	CYCGRG	1 cut(s)	212
BmiI	GGNNCC	3 cut(s)	76, 190, 218
BmrFI	CCNGG	3 cut(s)	84, 213, 214
BpiI	GAAGAC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	213, 214
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	184, 190, 212, 307
BshNI	GGYRCC	2 cut(s)	188, 216
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	53, 213
BslI	CCNNNNNNNGG	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	79, 259, 279
BspACI	CCGC	2 cut(s)	4, 7
BspLI	GGNNCC	3 cut(s)	76, 190, 218
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	188, 216
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	79, 259, 279
BssNI	GRCGYC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	2 cut(s)	220, 321
BstHHI	GCGC	3 cut(s)	219, 320, 325
BstKTI	GATC	3 cut(s)	82, 262, 282
BstMBI	GATC	3 cut(s)	79, 259, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	3 cut(s)	82, 211, 212
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	184, 190, 212, 307
BstV2I	GAAGAC	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	3 cut(s)	219, 320, 325
Cfr10I	RCCGGY	1 cut(s)	52
Cfr9I	CCCGGG	1 cut(s)	212
CviAII	CATG	2 cut(s)	271, 292
CviJI	RGCY	7 cut(s)	56, 87, 164, 197, 203, 257, 345
CviKI_1	RGCY	7 cut(s)	56, 87, 164, 197, 203, 257, 345
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	3 cut(s)	81, 261, 281
DpnII	GATC	3 cut(s)	79, 259, 279
Eco88I	CYCGRG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	82
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
FaeI	CATG	2 cut(s)	274, 295
FaiI	YATR	5 cut(s)	17, 102, 159, 272, 293
FatI	CATG	2 cut(s)	270, 291
FbaI	TGATCA	2 cut(s)	259, 279
Fnu4HI	GCNGC	5 cut(s)	5, 198, 201, 204, 321
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	5, 198, 201, 204, 321
GlaI	GCGC	3 cut(s)	218, 319, 324
GluI	GCNGC	5 cut(s)	5, 198, 201, 204, 321
HaeII	RGCGCY	2 cut(s)	220, 321
HapII	CCGG	2 cut(s)	53, 213
HhaI	GCGC	3 cut(s)	219, 320, 325
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	274, 295
Hin6I	GCGC	3 cut(s)	217, 318, 323
HinP1I	GCGC	3 cut(s)	217, 318, 323
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	53, 213
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	4 cut(s)	33, 79, 243, 284
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	274, 295
HspAI	GCGC	3 cut(s)	217, 318, 323
KasI	GGCGCC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	259, 279
Kzo9I	GATC	3 cut(s)	79, 259, 279
LpnPI	CCDG	4 cut(s)	66, 69, 96, 226
Lsp1109I	GCAGC	4 cut(s)	184, 190, 212, 307
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	81, 261, 281
MboI	GATC	3 cut(s)	79, 259, 279
MboII	GAAGA	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	217
MnlI	CCTC	2 cut(s)	161, 334
MroNI	GCCGGC	1 cut(s)	52
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	53, 213
MspR9I	CCNGG	3 cut(s)	84, 213, 214
MteI	GCGCNGCGC	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	203
NaeI	GCCGGC	1 cut(s)	54
NarI	GGCGCC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	213, 214
NdeII	GATC	3 cut(s)	79, 259, 279
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	274, 295
NlaIV	GGNNCC	3 cut(s)	76, 190, 218
NmuCI	GTSAC	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	5 cut(s)	6, 199, 202, 205, 322
PluTI	GGCGCC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	76, 190, 218
PstI	CTGCAG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	5 cut(s)	5, 198, 201, 204, 321
Sau3AI	GATC	3 cut(s)	79, 259, 279
ScrFI	CCNGG	3 cut(s)	84, 213, 214
SetI	ASST	3 cut(s)	153, 199, 205
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	218
SmaI	CCCGGG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	136, 338
SmoI	CTYRAG	2 cut(s)	136, 338
SsiI	CCGC	2 cut(s)	4, 7
SspDI	GGCGCC	1 cut(s)	216
SspI	AATATT	1 cut(s)	106
StyD4I	CCNGG	3 cut(s)	82, 211, 212
TaaI	ACNGT	1 cut(s)	304
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	4 cut(s)	197, 200, 203, 320
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	195, 259, 301
TspMI	CCCGGG	1 cut(s)	212
XmaI	CCCGGG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.