RchiOBHm_Chr3g0455201

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000163
Physical Location & Seq
Forward (+)
5027848 .. 5028270
423 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42215

Sequence Viewer

Length: 423 bp
ATGTTCTGGTTACTTCCGGATGCAAGAGATTGGCTGCCGGCTCTGGTTGAGAGAGCTGGGTCGGAGCCGGGGTTTCTAGATCACCATCTTAATGGTTGTTGCAGGCGTGTTAGGGTTGGGAAATTCTTGATCCCACAGTTTAAGATGTCTTCCGGGTTTGAAGCTTCGAGTGCTACGAAGAAATTAGGGCTGGGTTGTGATTTAATGGCCATAGTTCATGAGGCTGTAATAGAGGTCGATGAAAATGGCACAAAAGCTGCAGCTGCTACTTGTGCTCGTAGTTATTTTGGCGATGGTGAGGTCTCTAAGCCTGATGAGGAAGAAGACTTTGTGGCTGATCACACCTTCATGTTTCTCATAAGGGAAGACCTGACCGGAACGGTCATGTTCATGGGGCAGGTGCTCAATCCTCTTGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

140

Amino Acids

15.37

Weight (kDa)

4.88

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 65 - 137 4.6e-18 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
AccIII TCCGGA 1 cut(s) 16
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 4 cut(s) 56, 164, 257, 263
AluI AGCT 4 cut(s) 56, 164, 257, 263
Alw21I GWGCWC 2 cut(s) 277, 405
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 34, 257, 260, 263
ApoI RAATTY 1 cut(s) 122
AsuC2I CCSGG 2 cut(s) 69, 154
AsuHPI GGTGA 2 cut(s) 74, 308
BalI TGGCCA 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 141, 330, 372
Bbv12I GWGCWC 2 cut(s) 277, 405
BbvI GCAGC 4 cut(s) 21, 244, 250, 272
BccI CCATC 2 cut(s) 93, 287
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 2 cut(s) 69, 154
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 4 cut(s) 35, 258, 261, 264
BlsI GCNGC 4 cut(s) 36, 259, 262, 265
Bme1390I CCNGG 2 cut(s) 69, 154
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 69, 154
BmsI GCATC 1 cut(s) 10
BpiI GAAGAC 3 cut(s) 141, 330, 372
BpuMI CCSGG 2 cut(s) 69, 154
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 2 cut(s) 16, 374
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 84
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 416
BseXI GCAGC 4 cut(s) 21, 244, 250, 272
BseYI CCCAGC 2 cut(s) 56, 190
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 277, 405
BsiSI CCGG 5 cut(s) 17, 38, 68, 153, 375
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 277, 405
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 3 cut(s) 79, 129, 337
BspANI GGCC 1 cut(s) 209
BspEI TCCGGA 1 cut(s) 16
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 3 cut(s) 79, 129, 337
Bst4CI ACNGT 2 cut(s) 138, 382
BstC8I GCNNGC 3 cut(s) 39, 104, 418
BstDEI CTNAG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 3 cut(s) 82, 132, 340
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 79, 129, 337
BstMWI GCNNNNNNNGC 3 cut(s) 170, 263, 272
BstSCI CCNGG 2 cut(s) 67, 152
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 21, 244, 250, 272
BstV2I GAAGAC 3 cut(s) 141, 330, 372
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 3 cut(s) 39, 104, 418
CciI TCATGA 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 37
CviAII CATG 4 cut(s) 218, 349, 385, 391
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 81, 131, 339
DpnII GATC 3 cut(s) 79, 129, 337
EaeI YGGCCR 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 307
EcoNI CCTNNNNNAGG 1 cut(s) 414
FaeI CATG 4 cut(s) 221, 352, 388, 394
FaiI YATR 6 cut(s) 212, 219, 350, 359, 386, 392
FatI CATG 4 cut(s) 217, 348, 384, 390
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 35, 258, 261, 264
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 35, 258, 261, 264
FspBI CTAG 1 cut(s) 77
GluI GCNGC 4 cut(s) 35, 258, 261, 264
GsaI CCCAGC 2 cut(s) 60, 194
HaeIII GGCC 1 cut(s) 209
HapII CCGG 5 cut(s) 17, 38, 68, 153, 375
Hin1II CATG 4 cut(s) 221, 352, 388, 394
HindIII AAGCTT 1 cut(s) 162
HpaII CCGG 5 cut(s) 17, 38, 68, 153, 375
HphI GGTGA 2 cut(s) 74, 308
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 4 cut(s) 17, 77, 127, 218
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 138, 382
HpyCH4V TGCA 4 cut(s) 23, 102, 260, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 263, 272
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 4 cut(s) 221, 352, 388, 394
Kpn2I TCCGGA 1 cut(s) 16
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 79, 129, 337
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 4 cut(s) 21, 244, 250, 272
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 9
MalI GATC 3 cut(s) 81, 131, 339
MboI GATC 3 cut(s) 79, 129, 337
MboII GAAGA 5 cut(s) 141, 190, 332, 335, 377
MhlI GDGCHC 2 cut(s) 277, 405
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 122, 182
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 5 cut(s) 214, 226, 292, 310, 420
Mox20I TGGCCA 1 cut(s) 209
MroI TCCGGA 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 37
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 90, 141, 203
MslI CAYNNNNRTG 3 cut(s) 90, 347, 389
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 5 cut(s) 17, 38, 68, 153, 375
MspR9I CCNGG 2 cut(s) 69, 154
MwoI GCNNNNNNNGC 3 cut(s) 170, 263, 272
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 2 cut(s) 69, 154
NdeII GATC 3 cut(s) 79, 129, 337
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 4 cut(s) 221, 352, 388, 394
NlaIV GGNNCC 1 cut(s) 66
PagI TCATGA 1 cut(s) 217
PaqCI CACCTGC 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PdiI GCCGGC 1 cut(s) 39
PkrI GCNGC 4 cut(s) 36, 259, 262, 265
PspFI CCCAGC 2 cut(s) 56, 190
PspN4I GGNNCC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 263
RseI CAYNNNNRTG 3 cut(s) 90, 347, 389
SaqAI TTAA 3 cut(s) 90, 141, 203
SatI GCNGC 4 cut(s) 35, 258, 261, 264
Sau3AI GATC 3 cut(s) 79, 129, 337
ScrFI CCNGG 2 cut(s) 69, 154
SduI GDGCHC 2 cut(s) 277, 405
SetI ASST 9 cut(s) 58, 166, 237, 259, 265, 303, 347, 372, 402
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 3 cut(s) 90, 347, 389
Sse9I AATT 2 cut(s) 122, 182
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 67, 152
TaaI ACNGT 2 cut(s) 138, 382
TaqI TCGA 2 cut(s) 167, 237
TasI AATT 2 cut(s) 122, 182
Tru1I TTAA 3 cut(s) 90, 141, 203
Tru9I TTAA 3 cut(s) 90, 141, 203
TseI GCWGC 4 cut(s) 34, 257, 260, 263
TspDTI ATGAA 4 cut(s) 206, 255, 337, 379
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 76
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.