Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000532.1

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

146235 .. 146726

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000532.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaagcagctgtttttgagtactgaagccaagaacaaaaatatggtgtactcgccactgtccatccacatggttctcagccttttaggggtcgggtcaaacggccctgcacaggaccagttgttcaccttcctcaggtccaagtccacccaagagctcaactatctagcctccactctcatgcctctgttctttgtgaaacaatcaccaaatggagggcctagcttgtcattcaccaatggcgtttgggtagacaagtctctcccggtcaaaccttctttcaaatggattgtggatactgcttacagggctgctttaaagcaagtcgattacaaggggaagtcagatgaagttagaatggaagtgaattcatgggctgagaaggagactaatggttgcatcaaagatattcttgcttctggctcagttaacagcctaacgaggctcattctcgcaaatgcattatacttcaaaggagattggaaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

163

Amino Acids

18.16

Weight (kDa)

9.3

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	22, 50
AfiI	CCNNNNNNNGG	4 cut(s)	88, 112, 135, 215
AgsI	TTSAA	2 cut(s)	283, 472
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	3 cut(s)	10, 157, 225
AluI	AGCT	3 cut(s)	10, 157, 225
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	264, 380
AoxI	GGCC	2 cut(s)	103, 218
ApeKI	GCWGC	2 cut(s)	7, 311
ApoI	RAATTY	1 cut(s)	367
AspS9I	GGNCC	4 cut(s)	104, 115, 138, 218
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	118, 198, 226
AvaII	GGWCC	2 cut(s)	115, 138
AxyI	CCTNAGG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	19, 298
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	264, 380
BfaI	CTAG	2 cut(s)	167, 222
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	8, 312
BlsI	GCNGC	2 cut(s)	9, 313
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	115, 138
BmgT120I	GGNCC	4 cut(s)	104, 115, 138, 218
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 112, 135, 215
Bse1I	ACTGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	4 cut(s)	88, 112, 135, 215
BseMII	CTCAG	4 cut(s)	91, 148, 369, 438
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	19, 298
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	105, 220
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	4 cut(s)	88, 112, 135, 215
BsmAI	GTCTC	2 cut(s)	264, 380
BsnI	GGCC	2 cut(s)	105, 220
Bsp1286I	GDGCHC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	105, 220
BspCNI	CTCAG	4 cut(s)	90, 147, 370, 437
BsrI	ACTGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	77, 134, 378, 424
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	264, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	19, 298
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	105, 220
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	104, 115, 138, 218
Csp6I	GTAC	2 cut(s)	21, 49
CviAII	CATG	3 cut(s)	70, 181, 372
CviQI	GTAC	2 cut(s)	21, 49
DdeI	CTNAG	4 cut(s)	77, 134, 378, 424
DraI	TTTAAA	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	115, 138
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	3 cut(s)	73, 184, 375
FaiI	YATR	5 cut(s)	44, 71, 182, 373, 466
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	3 cut(s)	69, 180, 371
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	8, 312
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	8, 312
FspBI	CTAG	2 cut(s)	167, 222
GluI	GCNGC	2 cut(s)	8, 312
HaeIII	GGCC	2 cut(s)	105, 220
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	3 cut(s)	73, 184, 375
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	118, 198, 226
Hpy166II	GTNNAC	5 cut(s)	49, 126, 147, 253, 430
Hpy188I	TCNGA	1 cut(s)	346
Hpy8I	GTNNAC	5 cut(s)	49, 126, 147, 253, 430
HpyAV	CCTTC	4 cut(s)	139, 285, 376, 478
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	110, 399, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	77, 134, 378, 424
Hsp92II	CATG	3 cut(s)	73, 184, 375
KspAI	GTTAAC	1 cut(s)	430
LpnPI	CCDG	7 cut(s)	98, 120, 121, 131, 279, 292, 405
Lsp1109I	GCAGC	2 cut(s)	19, 298
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	167, 222
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	367
MnlI	CCTC	5 cut(s)	143, 181, 195, 209, 435
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	2 cut(s)	317, 429
MslI	CAYNNNNRTG	2 cut(s)	68, 179
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	266
NlaIII	CATG	3 cut(s)	73, 184, 375
NsiI	ATGCAT	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	9, 313
Psp124BI	GAGCTC	1 cut(s)	159
PspPI	GGNCC	4 cut(s)	104, 115, 138, 218
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	2 cut(s)	22, 50
RsaNI	GTAC	2 cut(s)	21, 49
RseI	CAYNNNNRTG	2 cut(s)	68, 179
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	317, 429
SatI	GCNGC	2 cut(s)	8, 312
Sau96I	GGNCC	4 cut(s)	104, 115, 138, 218
ScaI	AGTACT	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	12, 131, 140, 159, 227, 277
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	2 cut(s)	115, 138
SmiMI	CAYNNNNRTG	2 cut(s)	68, 179
Sse9I	AATT	1 cut(s)	367
SspMI	CTAG	2 cut(s)	167, 222
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	327
TasI	AATT	1 cut(s)	367
TatI	WGTACW	2 cut(s)	20, 48
Tru1I	TTAA	2 cut(s)	317, 429
Tru9I	TTAA	2 cut(s)	317, 429
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	2 cut(s)	7, 311
TspDTI	ATGAA	3 cut(s)	17, 360, 363
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	115, 138
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	167, 222
ZrmI	AGTACT	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.